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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oLE | 12979 | 2023-04-28 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.05 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.005 | 0.85 | 0.0 | 0.04 | 15.96 | 0.00 | 2.067 | 24.45 | 0.57 | 11.8 | 88.0 | 0.2 | -2.00 | 1.97 | 0.76 | 0.74 | 0.66 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |
✔ | 6UXV | 20933 | 2023-04-24 | 2019-11-08 | 4.7 | 4.98 | — | 4.7 | 0.006 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 1.532 | 29.48 | 0.48 | 17.7 | 82.1 | 0.3 | -5.06 | 0.80 | 0.81 | — | 4.7 | 0.003 | 0.77 | 0.0 | 0.04 | 14.49 | 0.00 | 2.098 | 16.85 | 0.06 | 11.6 | 88.2 | 0.1 | -1.00 | 0.73 | 0.79 | 0.79 | — | 16649 | 1920 | 15 | 0 | 273 | 0 | 0 | logfile |
✔ | 5X6o | 6708 | 2023-04-25 | 2017-02-22 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.01 | 4.0 | 0.06 | 11.26 | 0.00 | 1.863 | 21.05 | 1.64 | 15.8 | 82.1 | 2.2 | -5.44 | 0.60 | 0.72 | 1.68 | 3.9 | 0.003 | 0.79 | 0.0 | 0.04 | 14.79 | 0.00 | 2.177 | 10.11 | 0.29 | 8.4 | 90.3 | 1.3 | -0.74 | 0.82 | 0.62 | 0.76 | 0.97 | 19309 | 2701 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJ6 | 10212 | 2023-04-28 | 2019-08-12 | 3.23 | 3.28 | — | 3.2 | 0.010 | 1.05 | 0.0 | 0.06 | 17.17 | 0.01 | 1.886 | 4.33 | 0.14 | 17.7 | 82.2 | 0.2 | -6.09 | 0.78 | 0.78 | 3.43 | 3.2 | 0.005 | 0.78 | 0.0 | 0.04 | 17.22 | 0.01 | 1.839 | 8.44 | 0.51 | 12.8 | 87.2 | 0.0 | -3.73 | 2.00 | 0.80 | 0.80 | 2.36 | 78296 | 2611 | 27 | 2697 | 59 | 0 | 0 | logfile |
✔ | 7AKV | 11814 | 2023-04-20 | 2020-10-02 | 3.6 | 3.04 | 3.41 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.005 | 76.42 | 0.16 | 17.7 | 82.2 | 0.1 | -4.19 | 0.81 | 0.82 | 2.44 | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 16.00 | 0.00 | 2.063 | 70.95 | 0.47 | 12.5 | 87.4 | 0.1 | -3.09 | 0.86 | 0.81 | 0.82 | 1.88 | 6201 | 799 | 2 | 0 | 0 | 0 | 245 | logfile |
✔ | 7ASP | 11903 | 2023-04-26 | 2020-10-27 | 2.86 | 3.63 | — | 3.1 | 0.008 | 1.05 | 3.0 | 0.10 | 23.04 | 0.00 | 1.802 | 23.94 | 24.23 | 14.8 | 82.3 | 2.8 | -5.21 | 0.88 | 0.86 | 1.55 | 3.1 | 0.007 | 0.76 | 0.0 | 0.04 | 20.82 | 0.00 | 1.967 | 17.31 | 6.10 | 10.3 | 89.6 | 0.1 | -2.34 | 1.02 | 0.87 | 0.89 | 2.01 | 128828 | 4974 | 47 | 4284 | 0 | 0 | 0 | logfile |
✔ | 7W68 | 32326 | 2023-04-27 | 2021-12-01 | 4.4 | 3.35 | — | 2.6 | 0.013 | 1.73 | 35.0 | 0.15 | 17.02 | 0.01 | 1.130 | 27.44 | 2.99 | 15.1 | 82.3 | 2.6 | -4.91 | 0.68 | 0.67 | — | 6.5 | 0.004 | 0.91 | 0.0 | 0.05 | 14.39 | 0.01 | 2.077 | 24.12 | 0.00 | 11.1 | 88.4 | 0.5 | -2.68 | 1.20 | 0.67 | 0.66 | — | 25833 | 3249 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E3C | 30979 | 2023-04-19 | 2021-02-08 | 4.2 | 3.87 | — | 3.7 | 0.026 | 1.55 | 0.0 | 0.05 | 13.84 | 0.01 | 2.151 | 21.49 | 0.00 | 17.2 | 82.3 | 0.5 | -3.63 | 0.79 | 0.79 | — | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 13.96 | 0.00 | 2.140 | 14.75 | 0.00 | 12.6 | 87.4 | 0.0 | -3.24 | 1.57 | 0.79 | 0.79 | — | 2937 | 405 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6WHT | 21675 | 2023-04-25 | 2020-04-08 | 4.39 | 5.00 | — | 4.6 | 0.006 | 0.85 | 0.0 | 0.05 | 12.85 | 0.01 | 1.983 | 23.64 | 0.63 | 17.3 | 82.3 | 0.3 | -5.16 | 0.65 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20532 | 3082 | 10 | 0 | 8 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-04-20 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SoF | 10273 | 2023-04-29 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.36 | 0.00 | 1.934 | 15.84 | 0.00 | 15.3 | 84.7 | 0.0 | -3.90 | 1.45 | 0.82 | 0.72 | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✔ | 5TCU | 8402 | 2023-04-28 | 2016-09-15 | 3.9 | 4.02 | — | 3.9 | 0.010 | 1.21 | 0.0 | 0.06 | 18.30 | 0.01 | 2.000 | 6.31 | 0.88 | 17.4 | 82.4 | 0.2 | -5.50 | 0.70 | 0.79 | 2.09 | 3.9 | 0.004 | 0.70 | 0.0 | 0.04 | 18.32 | 0.00 | 1.829 | 13.13 | 0.94 | 14.0 | 86.0 | 0.0 | -3.80 | 0.42 | 0.71 | 0.83 | 1.16 | 133876 | 5134 | 56 | 4494 | 130 | 0 | 0 | logfile |
✔ | 6PiJ | 20351 | 2023-04-29 | 2019-06-26 | 2.9 | 3.06 | 3.01 | 3.0 | 0.013 | 1.74 | 0.0 | 0.08 | 16.44 | 0.00 | 2.277 | 3.60 | 0.66 | 14.2 | 82.4 | 3.4 | -4.59 | 0.68 | 0.80 | 3.24 | 3.0 | 0.004 | 0.87 | 0.0 | 0.05 | 18.26 | 0.01 | 2.049 | 12.56 | 2.67 | 15.3 | 84.2 | 0.5 | -2.45 | 1.21 | 0.73 | 0.86 | 2.96 | 29671 | 3452 | 13 | 96 | 0 | 0 | 0 | logfile |
✔ | 5ZAK | 6904 | 2023-04-22 | 2018-02-07 | 4.4 | 3.52 | — | 3.2 | 0.009 | 1.61 | 1.0 | 0.07 | 11.72 | 0.01 | 2.185 | 17.87 | 0.72 | 17.3 | 82.4 | 0.3 | -5.20 | 0.80 | 0.64 | — | 3.4 | 0.004 | 0.96 | 0.0 | 0.05 | 13.31 | 0.01 | 2.108 | 28.91 | 0.00 | 15.6 | 84.4 | 0.0 | -2.75 | 1.66 | 0.80 | 0.65 | — | 11112 | 1389 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SHB | 10197 | 2023-04-24 | 2019-08-06 | 3.07 | 3.59 | 3.24 | 3.4 | 0.009 | 0.87 | 0.0 | 0.05 | 15.51 | 0.00 | 1.963 | 21.45 | 0.48 | 17.2 | 82.4 | 0.4 | -5.08 | 0.74 | 0.73 | 2.65 | 3.4 | 0.003 | 0.78 | 0.0 | 0.05 | 16.67 | 0.00 | 2.079 | 15.29 | 0.47 | 11.7 | 88.3 | 0.0 | -2.83 | 1.08 | 0.73 | 0.85 | 2.28 | 67700 | 8179 | 40 | 92 | 6 | 0 | 0 | logfile |
✔ | 7D46 | 30571 | 2023-04-27 | 2020-09-22 | 4.0 | 4.10 | — | 4.1 | 0.008 | 0.93 | 0.0 | 0.05 | 15.19 | 0.00 | 2.116 | 18.69 | 0.42 | 17.5 | 82.4 | 0.1 | -5.10 | 0.77 | 0.82 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 16.77 | 0.00 | 2.095 | 15.17 | 0.77 | 9.7 | 90.3 | 0.0 | -1.88 | 1.58 | 0.76 | 0.81 | — | 26636 | 3481 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2023-04-21 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 10.85 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 7.85 | 0.00 | 2.192 | 4.64 | 0.00 | 15.8 | 84.2 | 0.0 | -1.38 | 1.34 | 0.78 | 0.80 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✘ | 7MLZ | 23914 | 2023-04-20 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 12.96 | 0.01 | 2.150 | 18.13 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2023-04-21 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 19.90 | 0.00 | 2.137 | 9.68 | 0.66 | 15.7 | 84.1 | 0.1 | -1.78 | 1.01 | 0.66 | 0.77 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7VT0 | 32117 | 2023-04-21 | 2021-10-27 | 3.4 | 3.53 | — | 3.5 | 0.011 | 1.31 | 16.0 | 0.06 | 14.91 | 0.01 | 2.126 | 14.86 | 3.65 | 14.3 | 82.6 | 3.1 | -4.14 | 0.68 | 0.76 | 3.22 | 3.5 | 0.004 | 0.78 | 0.0 | 0.05 | 15.86 | 0.00 | 2.132 | 10.74 | 0.00 | 14.4 | 84.8 | 0.8 | -3.20 | 1.20 | 0.69 | 0.78 | 2.83 | 10536 | 1326 | 2 | 0 | 0 | 0 | 0 | logfile |