Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M65	23689	2023-09-27	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.003	0.78	0.0	0.04	11.75	0.00	2.164	15.54	0.00	9.8	90.2	0.0	-5.71	4.56	0.51	0.70	—	2025	275	10	0	5	0	0	logfile
✔	6oR5	9032	2023-09-30	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.62	0.0	0.04	7.85	0.00	2.192	4.64	0.00	15.8	84.2	0.0	-1.38	1.34	0.78	0.80	—	10364	2058	1	0	5	0	0	logfile
✔	7MLZ	23914	2023-09-28	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	12.96	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.79	0.0	0.05	14.96	0.00	2.129	15.09	0.19	15.6	84.3	0.2	-4.17	0.50	0.82	0.65	1.05	4864	624	4	0	5	0	0	logfile
✔	6NY3	8980	2023-09-30	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	19.92	0.00	2.225	9.85	0.00	14.6	85.3	0.1	-1.85	1.01	0.66	0.77	0.74	10214	794	4	164	121	0	0	logfile
✔	7VT0	32117	2023-09-30	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.004	0.78	0.0	0.05	15.86	0.00	2.132	10.74	0.00	14.4	84.8	0.8	-3.20	1.20	0.69	0.78	2.83	10536	1326	2	0	0	0	0	logfile
✔	7E23	30950	2023-09-27	2021-02-04	3.3	3.62	—	3.6	0.004	0.83	0.0	0.05	14.45	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.004	0.75	0.0	0.05	16.24	0.01	2.162	14.04	0.30	14.2	85.5	0.3	-3.04	1.16	0.71	0.80	1.62	3133	403	4	0	1	0	0	logfile
✔	5YUD	6845	2023-09-30	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.31	0.01	1.301	55.14	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.003	0.90	0.0	0.05	13.44	0.01	2.044	21.69	0.00	11.7	87.8	0.5	-2.72	1.21	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✘	7RAV	24387	2023-09-28	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	7SZ5	25561	2023-09-30	2021-11-25	3.6	4.60	—	3.8	0.007	0.90	0.0	0.06	14.97	0.00	1.947	18.21	2.83	16.8	83.0	0.2	-5.33	0.86	0.75	1.50	3.8	0.003	0.69	0.0	0.04	15.28	0.00	2.192	15.12	0.09	10.7	89.3	0.0	-2.46	1.64	0.91	0.85	1.02	9367	1214	4	0	0	0	0	logfile
✘	6Q6i	4468	2023-09-29	2018-12-11	3.7	3.77	—	3.8	0.009	1.22	0.0	0.06	17.03	0.01	2.244	8.63	1.89	16.7	83.0	0.3	-5.81	0.70	0.74	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57200	7490	10	0	10	0	0	logfile
✔	6iC3	4452	2023-09-28	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.277	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	3.9	0.004	0.91	0.0	0.04	16.99	0.01	2.218	19.56	0.35	12.4	87.6	0.0	-5.40	1.24	0.72	0.77	0.95	5472	728	8	0	0	0	0	logfile
✔	7DH0	30677	2023-09-29	2020-11-12	4.2	4.70	—	4.5	0.007	1.28	0.0	0.06	11.24	0.01	1.514	6.99	0.60	16.3	83.1	0.6	-5.67	0.84	0.72	—	4.5	0.003	0.82	0.0	0.04	12.22	0.00	2.043	13.16	0.02	14.9	84.9	0.2	-2.93	0.82	0.85	0.73	—	60091	7904	57	0	17	0	0	logfile
✔	6JNF	9851	2023-09-28	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.91	0.0	0.05	17.91	0.00	2.133	11.24	0.64	10.5	89.5	0.0	-2.83	1.47	0.67	0.82	1.30	7271	924	11	0	1	0	0	logfile
✔	7YR7	34048	2023-09-28	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	21.39	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.005	0.85	0.0	0.04	21.04	0.01	2.101	22.72	1.09	21.7	78.3	0.0	-3.50	1.49	0.67	0.66	0.71	5102	330	7	118	0	0	0	logfile
✔	6W6o	21560	2023-09-29	2020-03-17	3.2	3.40	—	3.4	0.011	1.34	0.0	0.06	24.38	0.00	2.078	53.37	16.39	15.2	83.3	1.6	-4.85	0.63	0.75	1.80	3.4	0.004	0.84	0.0	0.05	19.69	0.00	2.174	12.86	0.84	5.7	94.3	0.0	-0.43	2.08	0.64	0.83	1.86	9180	1044	12	0	12	0	0	logfile
✔	7L5J	23187	2023-09-30	2020-12-22	3.2	3.78	—	4.0	0.008	0.88	0.0	0.05	17.03	0.01	2.099	15.85	8.54	16.4	83.5	0.1	-5.48	0.60	0.73	1.80	3.9	0.003	0.71	0.0	0.04	15.80	0.00	2.213	9.23	0.41	8.2	91.8	0.0	-2.18	0.85	0.60	0.76	2.12	11234	1469	6	0	0	0	0	logfile
✔	6TH3	10502	2023-09-30	2019-11-18	4.0	4.17	4.09	4.0	0.007	1.10	0.0	0.05	10.47	0.01	2.268	4.52	0.00	16.5	83.5	0.0	-5.42	0.64	0.56	—	4.0	0.004	0.85	0.0	0.05	15.42	0.01	2.181	11.71	0.66	13.5	86.5	0.0	-1.92	1.67	0.74	0.78	—	60600	7800	75	0	0	0	0	logfile
✔	7VGJ	31971	2023-09-30	2021-09-16	3.98	3.67	—	3.5	0.007	0.91	0.0	0.05	15.32	0.01	2.160	26.07	0.48	16.4	83.6	0.0	-3.55	0.62	0.78	2.06	3.5	0.003	0.71	0.0	0.04	16.65	0.00	2.182	15.76	0.40	10.9	89.1	0.0	-1.97	0.44	0.61	0.77	1.69	11460	1414	3	0	1	0	0	logfile
✔	7Uo2	26638	2023-09-28	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	19.04	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	2.9	0.009	1.06	0.0	0.05	21.52	0.01	1.804	38.32	4.08	20.0	80.0	0.0	-3.08	0.77	0.88	0.81	1.68	6735	112	2	271	3	0	0	logfile
✔	6NY2	8996	2023-09-30	2019-02-10	3.2	3.56	—	3.4	0.007	1.02	0.0	0.05	20.27	0.01	2.266	6.07	0.66	15.6	83.6	0.8	-4.66	0.78	0.81	2.12	3.4	0.003	0.69	0.0	0.04	20.74	0.00	2.185	11.56	0.49	16.0	83.9	0.1	-1.36	0.47	0.77	0.82	1.49	10538	794	4	180	121	0	0	logfile

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