Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oLE	12979	2023-04-28	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile
✔	6UXV	20933	2023-04-24	2019-11-08	4.7	4.98	—	4.7	0.006	0.88	0.0	0.05	15.16	0.01	1.532	29.48	0.48	17.7	82.1	0.3	-5.06	0.80	0.81	—	4.7	0.003	0.77	0.0	0.04	14.49	0.00	2.098	16.85	0.06	11.6	88.2	0.1	-1.00	0.73	0.79	0.79	—	16649	1920	15	0	273	0	0	logfile
✔	5X6o	6708	2023-04-25	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.05	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.003	0.79	0.0	0.04	14.79	0.00	2.177	10.11	0.29	8.4	90.3	1.3	-0.74	0.82	0.62	0.76	0.97	19309	2701	2	0	0	0	0	logfile
✔	6SJ6	10212	2023-04-28	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	17.17	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.78	0.0	0.04	17.22	0.01	1.839	8.44	0.51	12.8	87.2	0.0	-3.73	2.00	0.80	0.80	2.36	78296	2611	27	2697	59	0	0	logfile
✔	7AKV	11814	2023-04-20	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.55	0.0	0.04	16.00	0.00	2.063	70.95	0.47	12.5	87.4	0.1	-3.09	0.86	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	7ASP	11903	2023-04-26	2020-10-27	2.86	3.63	—	3.1	0.008	1.05	3.0	0.10	23.04	0.00	1.802	23.94	24.23	14.8	82.3	2.8	-5.21	0.88	0.86	1.55	3.1	0.007	0.76	0.0	0.04	20.82	0.00	1.967	17.31	6.10	10.3	89.6	0.1	-2.34	1.02	0.87	0.89	2.01	128828	4974	47	4284	0	0	0	logfile
✔	7W68	32326	2023-04-27	2021-12-01	4.4	3.35	—	2.6	0.013	1.73	35.0	0.15	17.02	0.01	1.130	27.44	2.99	15.1	82.3	2.6	-4.91	0.68	0.67	—	6.5	0.004	0.91	0.0	0.05	14.39	0.01	2.077	24.12	0.00	11.1	88.4	0.5	-2.68	1.20	0.67	0.66	—	25833	3249	6	0	0	0	0	logfile
✔	7E3C	30979	2023-04-19	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✘	6WHT	21675	2023-04-25	2020-04-08	4.39	5.00	—	4.6	0.006	0.85	0.0	0.05	12.85	0.01	1.983	23.64	0.63	17.3	82.3	0.3	-5.16	0.65	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20532	3082	10	0	8	0	0	logfile
✘	6oUA	20200	2023-04-20	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5208	637	3	0	0	0	0	logfile
✔	6SoF	10273	2023-04-29	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	5TCU	8402	2023-04-28	2016-09-15	3.9	4.02	—	3.9	0.010	1.21	0.0	0.06	18.30	0.01	2.000	6.31	0.88	17.4	82.4	0.2	-5.50	0.70	0.79	2.09	3.9	0.004	0.70	0.0	0.04	18.32	0.00	1.829	13.13	0.94	14.0	86.0	0.0	-3.80	0.42	0.71	0.83	1.16	133876	5134	56	4494	130	0	0	logfile
✔	6PiJ	20351	2023-04-29	2019-06-26	2.9	3.06	3.01	3.0	0.013	1.74	0.0	0.08	16.44	0.00	2.277	3.60	0.66	14.2	82.4	3.4	-4.59	0.68	0.80	3.24	3.0	0.004	0.87	0.0	0.05	18.26	0.01	2.049	12.56	2.67	15.3	84.2	0.5	-2.45	1.21	0.73	0.86	2.96	29671	3452	13	96	0	0	0	logfile
✔	5ZAK	6904	2023-04-22	2018-02-07	4.4	3.52	—	3.2	0.009	1.61	1.0	0.07	11.72	0.01	2.185	17.87	0.72	17.3	82.4	0.3	-5.20	0.80	0.64	—	3.4	0.004	0.96	0.0	0.05	13.31	0.01	2.108	28.91	0.00	15.6	84.4	0.0	-2.75	1.66	0.80	0.65	—	11112	1389	2	0	0	0	0	logfile
✔	6SHB	10197	2023-04-24	2019-08-06	3.07	3.59	3.24	3.4	0.009	0.87	0.0	0.05	15.51	0.00	1.963	21.45	0.48	17.2	82.4	0.4	-5.08	0.74	0.73	2.65	3.4	0.003	0.78	0.0	0.05	16.67	0.00	2.079	15.29	0.47	11.7	88.3	0.0	-2.83	1.08	0.73	0.85	2.28	67700	8179	40	92	6	0	0	logfile
✔	7D46	30571	2023-04-27	2020-09-22	4.0	4.10	—	4.1	0.008	0.93	0.0	0.05	15.19	0.00	2.116	18.69	0.42	17.5	82.4	0.1	-5.10	0.77	0.82	—	4.1	0.004	0.75	0.0	0.05	16.77	0.00	2.095	15.17	0.77	9.7	90.3	0.0	-1.88	1.58	0.76	0.81	—	26636	3481	10	0	0	0	0	logfile
✔	6oR5	9032	2023-04-21	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.62	0.0	0.04	7.85	0.00	2.192	4.64	0.00	15.8	84.2	0.0	-1.38	1.34	0.78	0.80	—	10364	2058	1	0	5	0	0	logfile
✘	7MLZ	23914	2023-04-20	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	12.96	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4864	624	4	0	5	0	0	logfile
✔	6NY3	8980	2023-04-21	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.66	0.0	0.04	19.90	0.00	2.137	9.68	0.66	15.7	84.1	0.1	-1.78	1.01	0.66	0.77	0.74	10214	794	4	164	121	0	0	logfile
✔	7VT0	32117	2023-04-21	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.004	0.78	0.0	0.05	15.86	0.00	2.132	10.74	0.00	14.4	84.8	0.8	-3.20	1.20	0.69	0.78	2.83	10536	1326	2	0	0	0	0	logfile

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