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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7M65 | 23689 | 2023-09-27 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.009 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 11.75 | 0.00 | 2.164 | 15.54 | 0.00 | 9.8 | 90.2 | 0.0 | -5.71 | 4.56 | 0.51 | 0.70 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2023-09-30 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 10.85 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 7.85 | 0.00 | 2.192 | 4.64 | 0.00 | 15.8 | 84.2 | 0.0 | -1.38 | 1.34 | 0.78 | 0.80 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 7MLZ | 23914 | 2023-09-28 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 12.96 | 0.01 | 2.150 | 18.13 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.96 | 0.00 | 2.129 | 15.09 | 0.19 | 15.6 | 84.3 | 0.2 | -4.17 | 0.50 | 0.82 | 0.65 | 1.05 | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2023-09-30 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.64 | 0.0 | 0.03 | 19.92 | 0.00 | 2.225 | 9.85 | 0.00 | 14.6 | 85.3 | 0.1 | -1.85 | 1.01 | 0.66 | 0.77 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7VT0 | 32117 | 2023-09-30 | 2021-10-27 | 3.4 | 3.53 | — | 3.5 | 0.011 | 1.31 | 16.0 | 0.06 | 14.91 | 0.01 | 2.126 | 14.86 | 3.65 | 14.3 | 82.6 | 3.1 | -4.14 | 0.68 | 0.76 | 3.22 | 3.5 | 0.004 | 0.78 | 0.0 | 0.05 | 15.86 | 0.00 | 2.132 | 10.74 | 0.00 | 14.4 | 84.8 | 0.8 | -3.20 | 1.20 | 0.69 | 0.78 | 2.83 | 10536 | 1326 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E23 | 30950 | 2023-09-27 | 2021-02-04 | 3.3 | 3.62 | — | 3.6 | 0.004 | 0.83 | 0.0 | 0.05 | 14.45 | 0.01 | 2.123 | 14.37 | 0.00 | 17.3 | 82.7 | 0.0 | -3.70 | 0.70 | 0.77 | 2.78 | 3.6 | 0.004 | 0.75 | 0.0 | 0.05 | 16.24 | 0.01 | 2.162 | 14.04 | 0.30 | 14.2 | 85.5 | 0.3 | -3.04 | 1.16 | 0.71 | 0.80 | 1.62 | 3133 | 403 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 5YUD | 6845 | 2023-09-30 | 2017-11-21 | 4.28 | 4.47 | — | 4.3 | 0.008 | 1.31 | 0.0 | 0.06 | 10.31 | 0.01 | 1.301 | 55.14 | 0.17 | 16.1 | 82.8 | 1.1 | -5.50 | 0.76 | 0.74 | — | 4.3 | 0.003 | 0.90 | 0.0 | 0.05 | 13.44 | 0.01 | 2.044 | 21.69 | 0.00 | 11.7 | 87.8 | 0.5 | -2.72 | 1.21 | 0.77 | 0.78 | — | 10510 | 1313 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7RAV | 24387 | 2023-09-28 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.84 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SZ5 | 25561 | 2023-09-30 | 2021-11-25 | 3.6 | 4.60 | — | 3.8 | 0.007 | 0.90 | 0.0 | 0.06 | 14.97 | 0.00 | 1.947 | 18.21 | 2.83 | 16.8 | 83.0 | 0.2 | -5.33 | 0.86 | 0.75 | 1.50 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.28 | 0.00 | 2.192 | 15.12 | 0.09 | 10.7 | 89.3 | 0.0 | -2.46 | 1.64 | 0.91 | 0.85 | 1.02 | 9367 | 1214 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Q6i | 4468 | 2023-09-29 | 2018-12-11 | 3.7 | 3.77 | — | 3.8 | 0.009 | 1.22 | 0.0 | 0.06 | 17.03 | 0.01 | 2.244 | 8.63 | 1.89 | 16.7 | 83.0 | 0.3 | -5.81 | 0.70 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57200 | 7490 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6iC3 | 4452 | 2023-09-28 | 2018-12-02 | 3.3 | 4.00 | — | 3.9 | 0.010 | 1.26 | 0.0 | 0.06 | 16.17 | 0.01 | 2.277 | 9.22 | 1.39 | 16.9 | 83.1 | 0.0 | -5.61 | 0.76 | 0.80 | 1.39 | 3.9 | 0.004 | 0.91 | 0.0 | 0.04 | 16.99 | 0.01 | 2.218 | 19.56 | 0.35 | 12.4 | 87.6 | 0.0 | -5.40 | 1.24 | 0.72 | 0.77 | 0.95 | 5472 | 728 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DH0 | 30677 | 2023-09-29 | 2020-11-12 | 4.2 | 4.70 | — | 4.5 | 0.007 | 1.28 | 0.0 | 0.06 | 11.24 | 0.01 | 1.514 | 6.99 | 0.60 | 16.3 | 83.1 | 0.6 | -5.67 | 0.84 | 0.72 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.04 | 12.22 | 0.00 | 2.043 | 13.16 | 0.02 | 14.9 | 84.9 | 0.2 | -2.93 | 0.82 | 0.85 | 0.73 | — | 60091 | 7904 | 57 | 0 | 17 | 0 | 0 | logfile |
✔ | 6JNF | 9851 | 2023-09-28 | 2019-03-14 | 3.81 | 3.96 | 3.73 | 4.0 | 0.009 | 1.23 | 0.0 | 0.06 | 17.14 | 0.01 | 2.304 | 5.24 | 1.02 | 16.7 | 83.3 | 0.0 | -6.16 | 0.64 | 0.82 | 1.38 | 4.0 | 0.003 | 0.91 | 0.0 | 0.05 | 17.91 | 0.00 | 2.133 | 11.24 | 0.64 | 10.5 | 89.5 | 0.0 | -2.83 | 1.47 | 0.67 | 0.82 | 1.30 | 7271 | 924 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YR7 | 34048 | 2023-09-28 | 2022-08-09 | 3.8 | 4.63 | 4.40 | 4.6 | 0.008 | 1.25 | 1.0 | 0.09 | 21.39 | 0.01 | 2.385 | 7.94 | 4.74 | 16.7 | 83.3 | 0.0 | -5.36 | 0.64 | 0.60 | 0.33 | 4.6 | 0.005 | 0.85 | 0.0 | 0.04 | 21.04 | 0.01 | 2.101 | 22.72 | 1.09 | 21.7 | 78.3 | 0.0 | -3.50 | 1.49 | 0.67 | 0.66 | 0.71 | 5102 | 330 | 7 | 118 | 0 | 0 | 0 | logfile |
✔ | 6W6o | 21560 | 2023-09-29 | 2020-03-17 | 3.2 | 3.40 | — | 3.4 | 0.011 | 1.34 | 0.0 | 0.06 | 24.38 | 0.00 | 2.078 | 53.37 | 16.39 | 15.2 | 83.3 | 1.6 | -4.85 | 0.63 | 0.75 | 1.80 | 3.4 | 0.004 | 0.84 | 0.0 | 0.05 | 19.69 | 0.00 | 2.174 | 12.86 | 0.84 | 5.7 | 94.3 | 0.0 | -0.43 | 2.08 | 0.64 | 0.83 | 1.86 | 9180 | 1044 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7L5J | 23187 | 2023-09-30 | 2020-12-22 | 3.2 | 3.78 | — | 4.0 | 0.008 | 0.88 | 0.0 | 0.05 | 17.03 | 0.01 | 2.099 | 15.85 | 8.54 | 16.4 | 83.5 | 0.1 | -5.48 | 0.60 | 0.73 | 1.80 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.80 | 0.00 | 2.213 | 9.23 | 0.41 | 8.2 | 91.8 | 0.0 | -2.18 | 0.85 | 0.60 | 0.76 | 2.12 | 11234 | 1469 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TH3 | 10502 | 2023-09-30 | 2019-11-18 | 4.0 | 4.17 | 4.09 | 4.0 | 0.007 | 1.10 | 0.0 | 0.05 | 10.47 | 0.01 | 2.268 | 4.52 | 0.00 | 16.5 | 83.5 | 0.0 | -5.42 | 0.64 | 0.56 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 15.42 | 0.01 | 2.181 | 11.71 | 0.66 | 13.5 | 86.5 | 0.0 | -1.92 | 1.67 | 0.74 | 0.78 | — | 60600 | 7800 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VGJ | 31971 | 2023-09-30 | 2021-09-16 | 3.98 | 3.67 | — | 3.5 | 0.007 | 0.91 | 0.0 | 0.05 | 15.32 | 0.01 | 2.160 | 26.07 | 0.48 | 16.4 | 83.6 | 0.0 | -3.55 | 0.62 | 0.78 | 2.06 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 16.65 | 0.00 | 2.182 | 15.76 | 0.40 | 10.9 | 89.1 | 0.0 | -1.97 | 0.44 | 0.61 | 0.77 | 1.69 | 11460 | 1414 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Uo2 | 26638 | 2023-09-28 | 2022-04-12 | 3.1 | 3.75 | — | 3.0 | 0.002 | 0.55 | 0.0 | 0.03 | 19.04 | 0.00 | 2.033 | 10.61 | 2.04 | 14.5 | 83.6 | 1.8 | -3.16 | 0.85 | 0.73 | 1.50 | 2.9 | 0.009 | 1.06 | 0.0 | 0.05 | 21.52 | 0.01 | 1.804 | 38.32 | 4.08 | 20.0 | 80.0 | 0.0 | -3.08 | 0.77 | 0.88 | 0.81 | 1.68 | 6735 | 112 | 2 | 271 | 3 | 0 | 0 | logfile |
✔ | 6NY2 | 8996 | 2023-09-30 | 2019-02-10 | 3.2 | 3.56 | — | 3.4 | 0.007 | 1.02 | 0.0 | 0.05 | 20.27 | 0.01 | 2.266 | 6.07 | 0.66 | 15.6 | 83.6 | 0.8 | -4.66 | 0.78 | 0.81 | 2.12 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 20.74 | 0.00 | 2.185 | 11.56 | 0.49 | 16.0 | 83.9 | 0.1 | -1.36 | 0.47 | 0.77 | 0.82 | 1.49 | 10538 | 794 | 4 | 180 | 121 | 0 | 0 | logfile |