Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BG9	16027	2023-08-09	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	5ND9	3625	2023-08-24	2017-03-07	3.7	3.83	—	3.7	0.011	1.19	1.0	0.06	15.82	0.01	0.889	8.98	1.12	19.3	80.1	0.6	-5.81	0.76	0.77	1.23	3.9	0.003	0.67	0.0	0.03	15.69	0.01	2.074	16.26	0.80	12.1	87.8	0.0	-2.99	1.33	0.78	0.81	0.84	141051	5461	52	4569	0	0	0	logfile
✔	6CET	7465	2023-08-13	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	6GTD	0062	2023-08-09	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.008	0.99	0.0	0.07	20.73	0.00	1.909	27.42	0.00	22.2	77.8	0.0	-3.42	0.97	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6oF2	20040	2023-08-12	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.21	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✘	5H64	6668	2023-08-26	2016-11-10	4.4	3.65	—	3.4	0.011	1.57	0.0	0.07	11.97	0.01	1.144	72.33	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45252	6430	6	0	0	0	0	logfile
✔	7JMN	22397	2023-08-13	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.08	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	3.8	0.003	0.84	0.0	0.04	16.33	0.00	2.188	10.25	0.21	15.5	84.2	0.3	-3.53	1.24	0.78	0.77	1.31	13633	1756	5	0	52	0	0	logfile
✔	6TNG	10532	2023-08-10	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	7X7N	33042	2023-08-19	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.05	0.0	0.06	14.55	0.01	1.956	29.11	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	0.0	0.05	14.04	0.00	1.251	13.68	0.00	8.8	91.2	0.0	-2.53	0.76	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	6RAX	4786	2023-08-25	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.93	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.22	0.00	2.143	13.30	0.36	10.1	89.8	0.0	-2.87	1.49	0.56	0.53	0.28	40970	5062	19	29	6	0	0	logfile
✔	6CND	7532	2023-08-26	2018-03-08	4.8	4.76	—	4.5	0.006	1.14	3.0	0.06	14.17	0.01	2.023	38.71	0.72	18.0	80.4	1.6	-5.18	0.75	0.67	—	4.5	0.005	0.87	0.0	0.05	15.19	0.00	2.077	24.52	0.02	12.9	86.2	0.9	-2.31	0.85	0.85	0.80	—	47836	5695	27	112	69	0	0	logfile
✔	6B19	7031	2023-08-09	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.84	0.0	0.04	12.73	0.00	1.937	28.68	0.00	25.4	74.6	0.0	-4.85	1.32	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✘	6CNF	7533	2023-08-26	2018-03-08	4.5	4.70	—	4.4	0.006	1.16	9.0	0.06	13.86	0.01	1.905	40.19	0.74	17.9	80.5	1.6	-5.23	0.74	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47675	5695	27	104	69	0	0	logfile
✔	7SZ4	25560	2023-08-26	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.58	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	3.9	0.009	0.82	0.0	0.05	14.68	0.01	1.934	31.94	0.00	20.0	79.3	0.7	-3.11	0.49	0.88	0.76	—	48242	5973	12	0	0	0	0	logfile
✔	7BZW	30261	2023-08-11	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.82	0.0	0.05	14.68	0.01	1.922	20.13	0.00	19.3	80.7	0.0	-2.79	1.80	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6WHX	21679	2023-08-17	2020-04-08	4.09	4.50	—	4.4	0.007	0.87	0.0	0.05	14.57	0.01	2.048	18.82	0.13	19.4	80.6	0.0	-5.50	0.59	0.70	—	4.4	0.003	0.68	0.0	0.04	13.51	0.00	2.134	10.81	0.00	8.8	91.1	0.0	-2.12	0.56	0.61	0.74	—	22925	3154	8	0	4	0	0	logfile
✔	3J9R	6271	2023-08-26	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.004	0.71	0.0	0.04	15.80	0.00	2.039	14.59	0.58	8.7	90.3	1.0	-1.87	1.33	0.62	0.82	1.85	103824	13788	36	0	0	0	0	logfile
✔	7FG3	31577	2023-08-11	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	6EZo	4162	2023-08-15	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile
✔	7FES	31562	2023-08-22	2021-07-21	3.4	3.53	—	4.2	0.011	1.21	5.0	0.10	15.70	0.01	1.102	14.90	2.30	17.7	80.8	1.5	-5.10	0.70	0.79	1.36	4.2	0.004	0.77	3.0	0.09	17.18	0.00	1.966	13.49	0.79	12.2	87.6	0.2	-2.74	2.44	0.71	0.80	1.36	33873	2198	14	0	0	0	17095	logfile

• ← previous
• Page 7 of 542
• next →