Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CNB	7530	2022-12-22	2018-03-08	4.1	4.34	—	4.2	0.007	1.15	2.0	0.06	13.97	0.01	1.836	32.45	0.60	17.4	81.2	1.4	-5.08	0.73	0.68	—	4.2	0.003	0.84	0.0	0.04	15.25	0.00	2.082	17.78	0.02	10.8	88.1	1.1	-2.13	1.49	0.83	0.81	—	47837	5695	27	112	69	0	0	logfile
✔	6GJ1	0009	2022-12-13	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.54	0.01	2.091	23.54	0.07	17.5	82.4	0.1	-3.80	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6PiF	20349	2022-12-16	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	7.10	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.004	0.86	1.0	0.05	17.02	0.00	2.054	11.87	0.30	15.5	83.9	0.6	-2.87	1.57	0.72	0.85	2.35	28954	3448	11	60	0	0	0	logfile
✔	7KVE	23048	2022-12-12	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.50	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.71	0.0	0.05	16.43	0.01	2.146	13.58	0.33	14.1	85.9	0.0	-4.13	1.20	0.75	0.73	2.30	11142	1374	1	0	0	0	0	logfile
✔	6PiG	20350	2022-12-16	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.75	1.0	0.09	16.07	0.00	2.173	2.07	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.004	0.83	0.0	0.05	17.25	0.01	2.118	11.12	0.43	15.9	83.6	0.5	-2.84	0.59	0.65	0.79	2.28	28867	3439	11	60	0	0	0	logfile
✔	5WRG	6679	2022-12-13	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.10	0.0	0.05	12.22	0.00	1.996	18.90	0.00	17.5	82.3	0.1	-3.22	1.51	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	7KVF	23049	2022-12-12	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.50	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.003	0.80	0.0	0.05	16.24	0.00	2.144	17.41	0.00	11.8	88.2	0.0	-3.68	2.40	0.87	0.76	0.68	11142	1374	1	0	0	0	0	logfile
✔	7V47	31702	2022-12-11	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.00	0.00	2.426	6.32	3.25	17.5	82.5	0.0	-4.25	0.34	0.43	0.79	5.70	2484	366	6	0	0	0	0	logfile
✔	6RAZ	4788	2022-12-20	2019-04-08	4.46	4.58	4.41	4.5	0.011	1.60	29.0	0.14	18.54	0.01	1.308	23.43	6.20	17.7	81.4	1.0	-5.70	0.65	0.65	—	4.5	0.003	0.86	0.0	0.05	15.49	0.00	2.122	17.42	0.17	12.6	87.4	0.0	-3.30	3.62	0.66	0.64	—	38294	4764	18	23	6	0	0	logfile
✔	7o7R	12754	2022-12-20	2021-04-13	3.9	4.51	—	4.3	0.013	1.32	8.0	0.07	16.26	0.01	1.912	21.03	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.004	0.96	0.0	0.05	17.08	0.01	1.975	22.06	0.45	9.7	90.2	0.1	-3.30	0.87	0.83	0.76	0.36	40530	5126	16	0	40	0	0	logfile
✔	5XLP	6731	2022-12-12	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.006	1.10	0.0	0.05	16.12	0.01	1.922	30.30	0.11	21.0	78.6	0.4	-4.50	1.97	0.67	0.66	—	9952	1343	6	24	0	0	0	logfile
✘	6CB8	7449	2022-12-19	2018-02-02	3.8	4.12	—	4.3	0.006	0.84	0.0	0.05	11.53	0.01	0.173	75.29	0.00	18.6	81.4	0.0	-5.72	0.54	0.26	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103936	6440	28	0	28	0	52304	logfile
✔	5H0S	9565	2022-12-14	2016-10-06	3.3	3.03	—	3.0	0.029	2.80	212.0	0.22	18.08	0.02	1.068	66.89	18.78	13.9	81.5	4.6	-4.21	0.40	0.74	1.68	3.0	0.004	0.90	0.0	0.05	17.51	0.01	2.066	15.99	0.81	11.2	88.1	0.7	-1.93	1.24	0.41	0.81	1.89	18885	2395	2	0	0	0	0	logfile
✔	5YFP	6827	2022-12-18	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.10	0.0	0.04	10.51	0.00	2.070	27.46	0.20	19.1	80.6	0.3	-2.06	3.38	0.90	0.70	—	33096	5982	8	0	0	0	0	logfile
✔	6TNF	10531	2022-12-12	2019-12-07	3.8	2.90	3.67	2.7	0.034	1.65	0.0	0.27	15.46	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.7	0.003	0.83	0.0	0.06	12.92	0.00	2.186	8.28	0.00	15.8	84.2	0.0	-2.26	0.51	0.65	0.63	—	9559	2206	5	0	66	0	0	logfile
✔	6WUN	21917	2022-12-12	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.80	0.0	0.04	15.06	0.00	2.095	12.52	0.28	16.7	83.2	0.2	-3.80	0.54	0.68	0.79	1.41	10082	1326	4	0	0	0	0	logfile
✔	6PYH	20524	2022-12-13	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.82	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.66	0.0	0.04	13.76	0.00	2.006	12.96	0.07	8.1	91.9	0.0	-2.26	0.65	0.84	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	7D43	30568	2022-12-16	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.64	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.006	0.82	0.0	0.05	13.83	0.00	2.095	21.55	0.00	12.5	87.4	0.0	-2.67	1.58	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	6HDD	0204	2022-12-16	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.01	0.0	0.05	13.22	0.01	1.497	26.00	0.00	17.4	82.2	0.4	-3.46	5.55	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	6oKS	20103	2022-12-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.85	0.0	0.05	14.28	0.01	2.144	15.32	0.00	17.5	82.5	0.0	-4.73	2.22	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile

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