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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BG9 | 16027 | 2023-08-09 | 2022-10-27 | 3.5 | 3.74 | 2.80 | 4.2 | 0.008 | 1.46 | 0.0 | 0.09 | 14.96 | 0.01 | 2.484 | 12.17 | 12.50 | 17.1 | 80.0 | 2.9 | -5.16 | 0.38 | 0.79 | 4.51 | 4.0 | 0.006 | 0.76 | 0.0 | 0.05 | 15.60 | 0.00 | 2.264 | 7.60 | 0.00 | 10.5 | 89.5 | 0.0 | -4.03 | 0.99 | 0.39 | 0.81 | 5.60 | 1692 | 222 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND9 | 3625 | 2023-08-24 | 2017-03-07 | 3.7 | 3.83 | — | 3.7 | 0.011 | 1.19 | 1.0 | 0.06 | 15.82 | 0.01 | 0.889 | 8.98 | 1.12 | 19.3 | 80.1 | 0.6 | -5.81 | 0.76 | 0.77 | 1.23 | 3.9 | 0.003 | 0.67 | 0.0 | 0.03 | 15.69 | 0.01 | 2.074 | 16.26 | 0.80 | 12.1 | 87.8 | 0.0 | -2.99 | 1.33 | 0.78 | 0.81 | 0.84 | 141051 | 5461 | 52 | 4569 | 0 | 0 | 0 | logfile |
✔ | 6CET | 7465 | 2023-08-13 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.05 | 14.01 | 0.01 | 2.112 | 19.33 | 0.06 | 18.7 | 81.3 | 0.0 | -3.78 | 1.59 | 0.68 | 0.63 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2023-08-09 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.008 | 0.99 | 0.0 | 0.07 | 20.73 | 0.00 | 1.909 | 27.42 | 0.00 | 22.2 | 77.8 | 0.0 | -3.42 | 0.97 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6oF2 | 20040 | 2023-08-12 | 2019-03-28 | 2.9 | 2.77 | — | 3.7 | 0.006 | 1.00 | 0.0 | 0.05 | 14.63 | 0.01 | 2.062 | 8.80 | 1.02 | 17.7 | 80.2 | 2.2 | -4.30 | 0.69 | 0.63 | 0.25 | 3.4 | 0.004 | 0.81 | 0.0 | 0.04 | 17.12 | 0.01 | 1.964 | 10.21 | 2.71 | 8.0 | 92.0 | 0.0 | 0.24 | 1.60 | 0.79 | 0.83 | 1.80 | 11062 | 1422 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 5H64 | 6668 | 2023-08-26 | 2016-11-10 | 4.4 | 3.65 | — | 3.4 | 0.011 | 1.57 | 0.0 | 0.07 | 11.97 | 0.01 | 1.144 | 72.33 | 0.80 | 17.3 | 80.2 | 2.4 | -5.94 | 0.74 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45252 | 6430 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JMN | 22397 | 2023-08-13 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.08 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 16.33 | 0.00 | 2.188 | 10.25 | 0.21 | 15.5 | 84.2 | 0.3 | -3.53 | 1.24 | 0.78 | 0.77 | 1.31 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2023-08-10 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 11.35 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.00 | 6.39 | 0.00 | 2.200 | 10.87 | 0.00 | 22.8 | 77.1 | 0.1 | -3.08 | 0.35 | 0.76 | 0.72 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X7N | 33042 | 2023-08-19 | 2022-03-10 | 4.47 | 4.03 | 4.49 | 4.2 | 0.013 | 1.05 | 0.0 | 0.06 | 14.55 | 0.01 | 1.956 | 29.11 | 0.52 | 19.6 | 80.3 | 0.1 | -5.63 | 0.73 | 0.77 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 14.04 | 0.00 | 1.251 | 13.68 | 0.00 | 8.8 | 91.2 | 0.0 | -2.53 | 0.76 | 0.72 | 0.76 | — | 26493 | 3314 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2023-08-25 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 23.93 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.003 | 0.82 | 0.0 | 0.04 | 18.22 | 0.00 | 2.143 | 13.30 | 0.36 | 10.1 | 89.8 | 0.0 | -2.87 | 1.49 | 0.56 | 0.53 | 0.28 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 6CND | 7532 | 2023-08-26 | 2018-03-08 | 4.8 | 4.76 | — | 4.5 | 0.006 | 1.14 | 3.0 | 0.06 | 14.17 | 0.01 | 2.023 | 38.71 | 0.72 | 18.0 | 80.4 | 1.6 | -5.18 | 0.75 | 0.67 | — | 4.5 | 0.005 | 0.87 | 0.0 | 0.05 | 15.19 | 0.00 | 2.077 | 24.52 | 0.02 | 12.9 | 86.2 | 0.9 | -2.31 | 0.85 | 0.85 | 0.80 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6B19 | 7031 | 2023-08-09 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.04 | 12.73 | 0.00 | 1.937 | 28.68 | 0.00 | 25.4 | 74.6 | 0.0 | -4.85 | 1.32 | 0.78 | 0.68 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✘ | 6CNF | 7533 | 2023-08-26 | 2018-03-08 | 4.5 | 4.70 | — | 4.4 | 0.006 | 1.16 | 9.0 | 0.06 | 13.86 | 0.01 | 1.905 | 40.19 | 0.74 | 17.9 | 80.5 | 1.6 | -5.23 | 0.74 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47675 | 5695 | 27 | 104 | 69 | 0 | 0 | logfile |
✔ | 7SZ4 | 25560 | 2023-08-26 | 2021-11-25 | 4.8 | 7.97 | 4.67 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.41 | 0.01 | 2.097 | 25.58 | 0.02 | 18.8 | 80.5 | 0.7 | -3.20 | 0.89 | 0.78 | — | 3.9 | 0.009 | 0.82 | 0.0 | 0.05 | 14.68 | 0.01 | 1.934 | 31.94 | 0.00 | 20.0 | 79.3 | 0.7 | -3.11 | 0.49 | 0.88 | 0.76 | — | 48242 | 5973 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZW | 30261 | 2023-08-11 | 2020-04-28 | 4.6 | 7.66 | 4.73 | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 15.82 | 0.01 | 2.176 | 28.88 | 0.00 | 19.4 | 80.6 | 0.0 | -5.59 | 0.85 | 0.67 | — | 6.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.68 | 0.01 | 1.922 | 20.13 | 0.00 | 19.3 | 80.7 | 0.0 | -2.79 | 1.80 | 0.93 | 0.86 | — | 9756 | 1212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHX | 21679 | 2023-08-17 | 2020-04-08 | 4.09 | 4.50 | — | 4.4 | 0.007 | 0.87 | 0.0 | 0.05 | 14.57 | 0.01 | 2.048 | 18.82 | 0.13 | 19.4 | 80.6 | 0.0 | -5.50 | 0.59 | 0.70 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 13.51 | 0.00 | 2.134 | 10.81 | 0.00 | 8.8 | 91.1 | 0.0 | -2.12 | 0.56 | 0.61 | 0.74 | — | 22925 | 3154 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2023-08-26 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 15.80 | 0.00 | 2.039 | 14.59 | 0.58 | 8.7 | 90.3 | 1.0 | -1.87 | 1.33 | 0.62 | 0.82 | 1.85 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-08-11 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2023-08-15 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.008 | 0.97 | 0.0 | 0.05 | 10.23 | 0.01 | 1.979 | 9.01 | 0.00 | 23.2 | 76.5 | 0.3 | -4.02 | 0.46 | 0.78 | 0.78 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7FES | 31562 | 2023-08-22 | 2021-07-21 | 3.4 | 3.53 | — | 4.2 | 0.011 | 1.21 | 5.0 | 0.10 | 15.70 | 0.01 | 1.102 | 14.90 | 2.30 | 17.7 | 80.8 | 1.5 | -5.10 | 0.70 | 0.79 | 1.36 | 4.2 | 0.004 | 0.77 | 3.0 | 0.09 | 17.18 | 0.00 | 1.966 | 13.49 | 0.79 | 12.2 | 87.6 | 0.2 | -2.74 | 2.44 | 0.71 | 0.80 | 1.36 | 33873 | 2198 | 14 | 0 | 0 | 0 | 17095 | logfile |