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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5Lii | 4053 | 2023-12-07 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2023-12-09 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 21.02 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.96 | 0.0 | 0.05 | 17.28 | 0.01 | 2.179 | 16.03 | 0.66 | 11.0 | 88.2 | 0.8 | -1.27 | 1.80 | 0.53 | 0.76 | 1.59 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-12-10 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 15.08 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.92 | 0.0 | 0.04 | 18.17 | 0.01 | 2.072 | 21.53 | 0.81 | 17.0 | 82.5 | 0.5 | -4.05 | 1.61 | 0.62 | 0.66 | 0.94 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6oF3 | 20041 | 2023-12-09 | 2019-03-28 | 3.0 | 2.82 | — | 3.7 | 0.008 | 1.59 | 2.0 | 0.08 | 14.84 | 0.01 | 2.058 | 3.96 | 0.85 | 16.1 | 81.9 | 2.0 | -4.36 | 0.70 | 0.65 | 0.87 | 3.5 | 0.003 | 0.88 | 0.0 | 0.04 | 17.48 | 0.01 | 1.947 | 10.78 | 3.99 | 8.3 | 91.5 | 0.1 | -0.19 | 1.22 | 0.79 | 0.82 | 1.71 | 11096 | 1430 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JVM | 36677 | 2023-12-07 | 2023-06-28 | 3.86 | 4.13 | 3.89 | 3.9 | 0.006 | 1.08 | 1.0 | 0.06 | 14.54 | 0.01 | 2.138 | 27.03 | 1.75 | 16.3 | 82.1 | 1.6 | -3.56 | 0.64 | 0.54 | 0.94 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 16.73 | 0.01 | 2.105 | 23.66 | 0.50 | 14.8 | 84.6 | 0.6 | -3.12 | 0.60 | 0.64 | 0.54 | 0.95 | 3726 | 498 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AKV | 11814 | 2023-12-08 | 2020-10-02 | 3.6 | 3.04 | 3.41 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.005 | 76.42 | 0.16 | 17.7 | 82.2 | 0.1 | -4.19 | 0.81 | 0.82 | 2.44 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 16.14 | 0.00 | 2.018 | 71.79 | 0.47 | 15.3 | 84.6 | 0.1 | -3.22 | 0.32 | 0.81 | 0.82 | 2.02 | 6201 | 799 | 2 | 0 | 0 | 0 | 245 | logfile |
✔ | 8E14 | 27823 | 2023-12-09 | 2022-08-09 | 3.36 | 4.87 | 3.36 | 3.5 | 0.007 | 1.12 | 1.0 | 0.08 | 24.72 | 0.01 | 2.182 | 16.48 | 0.41 | 17.7 | 82.3 | 0.0 | -2.84 | 0.92 | 0.86 | 0.70 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 24.50 | 0.00 | 2.192 | 14.49 | 0.21 | 16.4 | 83.6 | 0.0 | -2.49 | 0.32 | 0.92 | 0.86 | 0.81 | 12442 | 1161 | 16 | 160 | 2 | 0 | 0 | logfile |
✔ | 7E3C | 30979 | 2023-12-07 | 2021-02-08 | 4.2 | 3.87 | — | 3.7 | 0.026 | 1.55 | 0.0 | 0.05 | 13.93 | 0.01 | 2.151 | 21.49 | 0.00 | 17.2 | 82.3 | 0.5 | -3.63 | 0.79 | 0.79 | — | 3.7 | 0.003 | 0.73 | 0.0 | 0.05 | 13.66 | 0.00 | 2.078 | 14.39 | 0.00 | 10.8 | 89.2 | 0.0 | -2.98 | 1.13 | 0.79 | 0.78 | — | 2937 | 405 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-12-07 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M65 | 23689 | 2023-12-07 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.050 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.004 | 0.87 | 0.0 | 0.05 | 11.68 | 0.00 | 2.156 | 22.17 | 0.00 | 16.1 | 83.9 | 0.0 | -6.30 | 4.44 | 0.51 | 0.72 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7YMN | 33934 | 2023-12-07 | 2022-07-28 | 3.46 | 3.33 | 3.01 | 3.9 | 0.007 | 0.73 | 0.0 | 0.05 | 12.25 | 0.00 | 2.234 | 11.60 | 0.00 | 17.6 | 82.4 | 0.0 | -5.43 | 0.38 | 0.81 | 4.13 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 14.02 | 0.01 | 2.199 | 9.48 | 0.25 | 7.9 | 92.1 | 0.0 | -4.57 | 0.47 | 0.48 | 0.82 | 4.24 | 3468 | 456 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZAK | 6904 | 2023-12-09 | 2018-02-07 | 4.4 | 3.52 | — | 3.2 | 0.009 | 1.61 | 1.0 | 0.07 | 11.72 | 0.01 | 2.185 | 17.87 | 0.72 | 17.3 | 82.4 | 0.3 | -5.20 | 0.80 | 0.64 | — | 3.4 | 0.004 | 0.96 | 0.0 | 0.05 | 13.31 | 0.01 | 2.108 | 28.91 | 0.00 | 15.6 | 84.4 | 0.0 | -2.75 | 1.66 | 0.80 | 0.65 | — | 11112 | 1389 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2023-12-09 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 15.95 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 9.86 | 0.00 | 2.214 | 4.84 | 0.00 | 14.6 | 85.4 | 0.0 | -1.65 | 1.34 | 0.78 | 0.80 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2023-12-09 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 22.06 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.64 | 0.0 | 0.03 | 22.03 | 0.00 | 2.216 | 9.30 | 0.16 | 14.3 | 85.5 | 0.1 | -1.96 | 0.46 | 0.66 | 0.80 | 0.83 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7MLZ | 23914 | 2023-12-07 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 13.11 | 0.01 | 2.150 | 18.13 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.99 | 0.00 | 2.109 | 16.66 | 0.37 | 17.2 | 82.6 | 0.2 | -4.27 | 0.50 | 0.82 | 0.65 | 1.16 | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7VT0 | 32117 | 2023-12-09 | 2021-10-27 | 3.4 | 3.53 | — | 3.5 | 0.011 | 1.31 | 16.0 | 0.06 | 14.91 | 0.01 | 2.126 | 14.86 | 3.65 | 14.3 | 82.6 | 3.1 | -4.14 | 0.68 | 0.76 | 3.22 | 3.5 | 0.004 | 0.78 | 0.0 | 0.05 | 15.86 | 0.00 | 2.132 | 10.74 | 0.00 | 14.4 | 84.8 | 0.8 | -3.20 | 1.20 | 0.69 | 0.78 | 2.83 | 10536 | 1326 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G72 | 4356 | 2023-12-09 | 2018-04-04 | 3.9 | 4.03 | 4.01 | 4.0 | 0.011 | 1.10 | 0.0 | 1.03 | 11.76 | 0.01 | 1.475 | 9.32 | 0.23 | 16.8 | 82.7 | 0.4 | -5.65 | 0.65 | 0.78 | 1.98 | 4.0 | 0.009 | 1.74 | 0.0 | 0.31 | 16.37 | 0.01 | 1.955 | 18.53 | 0.60 | 12.2 | 87.7 | 0.1 | -2.33 | 0.98 | 0.66 | 0.81 | 1.24 | 64924 | 8071 | 55 | 0 | 14 | 0 | 0 | logfile |
✔ | 7E23 | 30950 | 2023-12-07 | 2021-02-04 | 3.3 | 3.62 | — | 3.6 | 0.004 | 0.83 | 0.0 | 0.05 | 14.52 | 0.01 | 2.123 | 14.37 | 0.00 | 17.3 | 82.7 | 0.0 | -3.70 | 0.70 | 0.77 | 2.78 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 16.17 | 0.00 | 2.152 | 15.51 | 0.30 | 16.0 | 83.7 | 0.3 | -3.12 | 1.15 | 0.72 | 0.80 | 2.18 | 3133 | 403 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 5YUD | 6845 | 2023-12-09 | 2017-11-21 | 4.28 | 4.47 | — | 4.3 | 0.008 | 1.31 | 0.0 | 0.06 | 10.62 | 0.01 | 1.301 | 55.14 | 0.17 | 16.1 | 82.8 | 1.1 | -5.50 | 0.76 | 0.74 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 13.49 | 0.00 | 2.089 | 22.69 | 0.00 | 11.6 | 87.8 | 0.5 | -2.73 | 1.18 | 0.77 | 0.78 | — | 10510 | 1313 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7EJU | 31163 | 2023-12-10 | 2021-04-02 | 3.5 | 3.64 | — | 3.6 | 0.009 | 1.29 | 0.0 | 0.07 | 11.94 | 0.01 | 2.257 | 4.79 | 1.15 | 17.0 | 82.8 | 0.2 | -5.48 | 0.72 | 0.79 | 3.13 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 15.00 | 0.00 | 2.097 | 10.05 | 0.26 | 12.9 | 87.1 | 0.0 | -2.79 | 0.84 | 0.70 | 0.79 | 2.28 | 13713 | 1700 | 4 | 0 | 3 | 0 | 0 | logfile |