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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6CNB | 7530 | 2022-12-22 | 2018-03-08 | 4.1 | 4.34 | — | 4.2 | 0.007 | 1.15 | 2.0 | 0.06 | 13.97 | 0.01 | 1.836 | 32.45 | 0.60 | 17.4 | 81.2 | 1.4 | -5.08 | 0.73 | 0.68 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.04 | 15.25 | 0.00 | 2.082 | 17.78 | 0.02 | 10.8 | 88.1 | 1.1 | -2.13 | 1.49 | 0.83 | 0.81 | — | 47837 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2022-12-13 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.54 | 0.01 | 2.091 | 23.54 | 0.07 | 17.5 | 82.4 | 0.1 | -3.80 | 1.19 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PiF | 20349 | 2022-12-16 | 2019-06-26 | 3.4 | 3.57 | 3.44 | 3.5 | 0.014 | 1.74 | 2.0 | 0.09 | 16.21 | 0.00 | 1.256 | 7.10 | 2.17 | 14.8 | 81.3 | 3.9 | -4.83 | 0.64 | 0.76 | 2.73 | 3.5 | 0.004 | 0.86 | 1.0 | 0.05 | 17.02 | 0.00 | 2.054 | 11.87 | 0.30 | 15.5 | 83.9 | 0.6 | -2.87 | 1.57 | 0.72 | 0.85 | 2.35 | 28954 | 3448 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 7KVE | 23048 | 2022-12-12 | 2020-11-27 | 3.3 | 3.69 | 3.38 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.50 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.75 | 0.73 | 2.61 | 3.6 | 0.003 | 0.71 | 0.0 | 0.05 | 16.43 | 0.01 | 2.146 | 13.58 | 0.33 | 14.1 | 85.9 | 0.0 | -4.13 | 1.20 | 0.75 | 0.73 | 2.30 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PiG | 20350 | 2022-12-16 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.75 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 2.07 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 17.25 | 0.01 | 2.118 | 11.12 | 0.43 | 15.9 | 83.6 | 0.5 | -2.84 | 0.59 | 0.65 | 0.79 | 2.28 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2022-12-13 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.10 | 0.0 | 0.05 | 12.22 | 0.00 | 1.996 | 18.90 | 0.00 | 17.5 | 82.3 | 0.1 | -3.22 | 1.51 | 0.68 | 0.76 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KVF | 23049 | 2022-12-12 | 2020-11-28 | 3.6 | 4.39 | 3.76 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.50 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.82 | 0.66 | 1.37 | 3.6 | 0.003 | 0.80 | 0.0 | 0.05 | 16.24 | 0.00 | 2.144 | 17.41 | 0.00 | 11.8 | 88.2 | 0.0 | -3.68 | 2.40 | 0.87 | 0.76 | 0.68 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2022-12-11 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 3.0 | 0.004 | 0.69 | 0.0 | 0.06 | 17.00 | 0.00 | 2.426 | 6.32 | 3.25 | 17.5 | 82.5 | 0.0 | -4.25 | 0.34 | 0.43 | 0.79 | 5.70 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAZ | 4788 | 2022-12-20 | 2019-04-08 | 4.46 | 4.58 | 4.41 | 4.5 | 0.011 | 1.60 | 29.0 | 0.14 | 18.54 | 0.01 | 1.308 | 23.43 | 6.20 | 17.7 | 81.4 | 1.0 | -5.70 | 0.65 | 0.65 | — | 4.5 | 0.003 | 0.86 | 0.0 | 0.05 | 15.49 | 0.00 | 2.122 | 17.42 | 0.17 | 12.6 | 87.4 | 0.0 | -3.30 | 3.62 | 0.66 | 0.64 | — | 38294 | 4764 | 18 | 23 | 6 | 0 | 0 | logfile |
✔ | 7o7R | 12754 | 2022-12-20 | 2021-04-13 | 3.9 | 4.51 | — | 4.3 | 0.013 | 1.32 | 8.0 | 0.07 | 16.26 | 0.01 | 1.912 | 21.03 | 1.07 | 18.3 | 81.4 | 0.3 | -5.78 | 0.83 | 0.75 | 0.13 | 4.3 | 0.004 | 0.96 | 0.0 | 0.05 | 17.08 | 0.01 | 1.975 | 22.06 | 0.45 | 9.7 | 90.2 | 0.1 | -3.30 | 0.87 | 0.83 | 0.76 | 0.36 | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2022-12-12 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 14.75 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.006 | 1.10 | 0.0 | 0.05 | 16.12 | 0.01 | 1.922 | 30.30 | 0.11 | 21.0 | 78.6 | 0.4 | -4.50 | 1.97 | 0.67 | 0.66 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |
✘ | 6CB8 | 7449 | 2022-12-19 | 2018-02-02 | 3.8 | 4.12 | — | 4.3 | 0.006 | 0.84 | 0.0 | 0.05 | 11.53 | 0.01 | 0.173 | 75.29 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.26 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103936 | 6440 | 28 | 0 | 28 | 0 | 52304 | logfile |
✔ | 5H0S | 9565 | 2022-12-14 | 2016-10-06 | 3.3 | 3.03 | — | 3.0 | 0.029 | 2.80 | 212.0 | 0.22 | 18.08 | 0.02 | 1.068 | 66.89 | 18.78 | 13.9 | 81.5 | 4.6 | -4.21 | 0.40 | 0.74 | 1.68 | 3.0 | 0.004 | 0.90 | 0.0 | 0.05 | 17.51 | 0.01 | 2.066 | 15.99 | 0.81 | 11.2 | 88.1 | 0.7 | -1.93 | 1.24 | 0.41 | 0.81 | 1.89 | 18885 | 2395 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2022-12-18 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.10 | 0.0 | 0.04 | 10.51 | 0.00 | 2.070 | 27.46 | 0.20 | 19.1 | 80.6 | 0.3 | -2.06 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNF | 10531 | 2022-12-12 | 2019-12-07 | 3.8 | 2.90 | 3.67 | 2.7 | 0.034 | 1.65 | 0.0 | 0.27 | 15.46 | 0.01 | 2.236 | 8.40 | 0.00 | 17.8 | 81.5 | 0.7 | -5.32 | 0.60 | 0.56 | — | 2.7 | 0.003 | 0.83 | 0.0 | 0.06 | 12.92 | 0.00 | 2.186 | 8.28 | 0.00 | 15.8 | 84.2 | 0.0 | -2.26 | 0.51 | 0.65 | 0.63 | — | 9559 | 2206 | 5 | 0 | 66 | 0 | 0 | logfile |
✔ | 6WUN | 21917 | 2022-12-12 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.80 | 0.0 | 0.04 | 15.06 | 0.00 | 2.095 | 12.52 | 0.28 | 16.7 | 83.2 | 0.2 | -3.80 | 0.54 | 0.68 | 0.79 | 1.41 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PYH | 20524 | 2022-12-13 | 2019-07-29 | 4.3 | 4.52 | — | 4.3 | 0.016 | 1.05 | 0.0 | 0.05 | 14.64 | 0.01 | 2.079 | 28.82 | 0.55 | 18.2 | 81.6 | 0.2 | -5.21 | 0.84 | 0.83 | — | 4.3 | 0.003 | 0.66 | 0.0 | 0.04 | 13.76 | 0.00 | 2.006 | 12.96 | 0.07 | 8.1 | 91.9 | 0.0 | -2.26 | 0.65 | 0.84 | 0.82 | — | 13187 | 1648 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D43 | 30568 | 2022-12-16 | 2020-09-22 | 4.3 | 4.40 | — | 4.3 | 0.006 | 0.99 | 0.0 | 0.05 | 14.62 | 0.01 | 2.018 | 28.64 | 0.31 | 18.3 | 81.6 | 0.1 | -6.11 | 0.83 | 0.79 | — | 4.3 | 0.006 | 0.82 | 0.0 | 0.05 | 13.83 | 0.00 | 2.095 | 21.55 | 0.00 | 12.5 | 87.4 | 0.0 | -2.67 | 1.58 | 0.83 | 0.78 | — | 31009 | 4347 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2022-12-16 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.004 | 1.01 | 0.0 | 0.05 | 13.22 | 0.01 | 1.497 | 26.00 | 0.00 | 17.4 | 82.2 | 0.4 | -3.46 | 5.55 | 0.82 | 0.49 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2022-12-13 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 14.28 | 0.01 | 2.144 | 15.32 | 0.00 | 17.5 | 82.5 | 0.0 | -4.73 | 2.22 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |