Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6XQN	22290	2021-05-03	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.69	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9433	1290	10	0	1	0	0	logfile
✔	7C7Q	30300	2021-05-04	2020-05-26	3.0	2.39	—	3.1	0.004	0.74	0.0	0.07	11.53	0.01	2.144	7.15	0.00	3.8	96.2	0.0	-2.81	0.78	0.76	3.24	2.1	0.005	0.72	0.0	0.05	15.04	0.01	2.156	8.65	1.96	4.6	95.4	0.0	-0.38	1.15	0.78	0.76	2.67	10894	1348	4	0	10	0	0	logfile
✔	6W8U	21578	2021-05-06	2020-03-21	3.8	4.14	—	4.0	0.004	0.54	0.0	0.05	12.25	0.00	2.062	10.46	0.48	4.4	95.6	0.0	-2.73	0.64	0.87	1.74	4.0	0.003	0.58	0.0	0.05	15.21	0.01	2.051	11.90	0.29	3.4	96.6	0.0	-0.62	1.16	0.64	0.85	1.27	41082	5740	41	0	0	0	0	logfile
✔	6TQF	10550	2021-05-03	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.004	0.61	0.0	0.04	15.93	0.00	1.979	2.48	0.09	3.6	96.4	0.0	-3.82	0.38	0.73	0.90	2.78	10426	1268	4	0	14	0	0	logfile
✔	7C7S	30301	2021-05-04	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.72	0.01	2.153	7.81	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.70	0.0	0.04	15.80	0.01	2.163	9.05	3.22	4.2	95.8	0.0	-0.18	0.58	0.83	0.81	2.65	10915	1355	4	0	9	0	0	logfile
✔	6W8X	21579	2021-05-05	2020-03-21	3.4	3.77	—	3.6	0.005	0.59	0.0	0.05	11.44	0.00	2.038	8.22	0.00	4.3	95.7	0.0	-2.19	0.59	0.85	2.04	3.6	0.004	0.60	0.0	0.05	13.33	0.00	2.082	7.43	0.21	2.9	97.1	0.0	-0.11	0.36	0.59	0.86	1.99	29766	4356	33	0	0	0	0	logfile
✔	6VoY	21301	2021-05-04	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	34.13	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	4.0	0.004	0.95	0.0	0.05	24.49	0.01	2.102	17.58	0.53	12.0	88.0	0.0	-2.27	1.46	0.67	0.80	1.02	17556	1724	16	180	6	0	0	logfile
✔	6NTS	0510	2021-05-03	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.28	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.41	0.00	1.738	7.03	0.00	2.5	97.5	0.0	0.88	2.54	0.92	0.84	1.32	9956	1240	5	0	3	0	0	logfile
✔	6SiH	10210	2021-05-06	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.003	0.58	0.0	0.04	13.47	0.00	2.024	12.22	0.00	4.8	95.2	0.0	1.35	1.59	0.88	0.79	—	37310	4880	10	0	0	0	0	logfile
✔	6WB2	21585	2021-05-03	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.65	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.53	0.0	0.04	11.45	0.00	2.201	10.46	0.17	3.8	96.2	0.0	-0.04	0.66	0.87	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6M39	30071	2021-05-05	2020-03-03	3.55	3.63	—	3.6	0.009	1.24	0.0	0.07	11.89	0.01	2.271	7.44	1.23	9.7	90.3	0.0	-4.52	0.73	0.80	2.70	3.6	0.005	0.76	0.0	0.05	14.89	0.00	2.127	16.13	0.99	9.8	90.2	0.0	-2.13	0.85	0.74	0.82	2.10	22716	2811	6	0	54	0	0	logfile
✘	6LQJ	0947	2021-05-04	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.76	0.0	0.05	16.29	0.00	2.216	11.00	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17100	2214	18	0	0	0	0	logfile
✔	6VZ1	21481	2021-05-03	2020-02-27	3.2	3.35	—	3.4	0.016	1.51	0.0	0.06	19.74	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.67	0.0	0.04	17.39	0.00	2.179	8.30	0.14	5.3	94.7	0.0	-0.55	0.99	0.57	0.84	2.37	7112	822	4	0	6	0	0	logfile
✔	6WPK	21863	2021-05-06	2020-04-27	3.3	3.38	—	3.3	0.018	1.13	0.0	0.04	15.34	0.00	2.277	10.72	0.65	7.9	92.0	0.0	-3.83	0.75	0.84	2.02	3.3	0.004	0.76	0.0	0.04	16.40	0.01	2.327	7.26	0.27	6.3	93.7	0.0	0.54	0.46	0.74	0.83	1.41	33229	4376	8	0	0	0	0	logfile
✔	6WAZ	21582	2021-05-03	2020-03-26	4.1	4.33	—	4.2	0.004	0.80	0.0	0.06	14.85	0.01	1.931	9.92	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	14.26	0.00	2.193	9.92	0.00	6.6	93.4	0.0	-0.98	1.32	0.83	0.84	—	8537	955	4	54	0	0	0	logfile
✔	6WCZ	21618	2021-05-03	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.55	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.003	0.76	0.0	0.04	15.24	0.01	2.015	15.82	0.47	7.0	93.0	0.0	-1.20	1.77	0.83	0.77	—	9894	1231	2	0	2	0	0	logfile
✘	6VYi	21461	2021-05-03	2020-02-26	3.0	3.28	—	3.2	0.012	1.20	0.0	0.05	18.80	0.00	2.157	10.51	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6916	812	4	0	4	0	0	logfile
✔	7JJP	22358	2021-05-06	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.71	0.86	4.90	40920	2352	36	0	180	396	19104	logfile
✔	6UW4	20917	2021-05-04	2019-11-04	3.1	3.24	—	3.2	0.010	0.97	0.0	0.06	17.92	0.01	2.280	3.97	0.00	5.8	94.2	0.0	-4.45	0.72	0.84	1.94	3.2	0.002	0.56	0.0	0.04	16.57	0.00	2.179	6.32	0.23	5.5	94.5	0.0	0.21	0.48	0.71	0.84	1.22	20281	2412	8	0	21	0	0	logfile
✔	6SKN	10229	2021-05-05	2019-08-16	4.5	4.78	4.35	4.5	0.003	0.61	0.0	0.04	12.96	0.00	1.979	8.47	0.18	1.6	98.4	0.0	-1.15	0.58	0.71	—	4.5	0.004	0.76	0.0	0.04	13.63	0.00	2.049	16.88	0.18	3.3	96.7	0.0	0.42	1.67	0.60	0.83	—	30984	3960	18	0	0	0	0	logfile

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