Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N1R	9318	2021-01-07	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.74	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.003	0.60	0.0	0.04	11.08	0.00	2.152	13.22	0.00	5.2	94.8	0.0	0.86	0.84	0.81	0.75	—	46044	5796	12	0	0	0	0	logfile
✔	6NE3	9356	2021-01-06	2018-12-16	3.9	3.77	—	3.7	0.008	0.95	0.0	0.05	28.16	0.01	2.287	6.25	0.48	6.9	93.1	0.0	-3.61	0.74	0.71	0.90	3.6	0.005	0.69	0.0	0.04	27.04	0.00	2.137	13.28	0.00	7.7	92.3	0.0	-0.56	0.58	0.80	0.80	1.15	16336	1245	11	312	1	0	0	logfile
✔	6QS4	4621	2021-01-06	2019-02-20	4.2	7.28	4.28	6.5	0.009	1.08	0.0	0.06	10.54	0.01	2.235	8.01	0.10	8.4	91.6	0.0	-3.77	0.83	0.65	—	6.5	0.003	0.65	0.0	0.04	12.10	0.00	2.135	19.37	0.03	5.5	94.5	0.0	0.44	2.04	0.91	0.84	—	28839	3622	13	0	11	0	0	logfile
✔	6MSM	9230	2021-01-05	2018-10-16	3.2	3.50	—	3.7	0.012	1.58	1.0	0.22	13.97	0.01	1.955	7.53	0.39	4.2	95.8	0.0	-2.75	0.53	0.75	2.57	3.7	0.003	0.77	0.0	0.07	14.25	0.00	2.007	6.36	0.00	2.8	97.2	0.0	0.93	0.77	0.61	0.82	2.50	9703	1181	3	0	27	0	0	logfile
✔	3JAD	6344	2021-01-05	2015-06-08	3.9	2.16	—	3.8	0.013	1.36	0.0	0.07	9.02	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.003	0.76	0.0	0.04	12.02	0.00	2.123	16.91	0.00	4.7	95.3	0.0	0.57	1.28	0.70	0.77	0.37	12705	1685	10	0	15	0	0	logfile
✔	3JAF	6346	2021-01-05	2015-06-08	3.8	2.26	—	3.8	0.015	1.30	0.0	0.41	10.07	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.22	0.0	0.13	12.50	0.00	2.177	16.38	0.00	3.1	96.9	0.0	0.39	1.83	0.72	0.81	1.19	13865	1710	10	0	15	0	0	logfile
✔	6KiW	0693	2021-01-06	2019-07-20	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	22.54	0.01	2.182	4.29	0.00	9.1	90.9	0.0	-3.96	0.70	0.74	—	4.0	0.003	0.64	0.0	0.04	23.05	0.00	2.102	11.74	0.00	7.6	92.4	0.0	-1.21	0.78	0.70	0.73	—	20225	1809	16	289	1	0	0	logfile
✔	6HRF	0260	2021-01-05	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.006	0.80	0.0	0.05	14.46	0.00	2.270	6.57	0.25	6.7	93.3	0.0	-3.47	3.76	0.37	0.77	3.84	3522	462	6	0	0	0	0	logfile
✔	6KiX	0694	2021-01-06	2019-07-20	4.1	4.17	—	4.1	0.006	0.83	0.0	0.05	22.57	0.01	2.219	3.30	0.00	8.6	91.4	0.0	-3.74	0.71	0.73	—	4.1	0.003	0.58	0.0	0.04	22.97	0.00	2.190	9.38	0.00	4.1	95.9	0.0	-1.17	0.88	0.71	0.72	—	19900	1763	15	290	1	0	0	logfile
✔	6KiU	9998	2021-01-06	2019-07-20	3.2	3.29	—	3.2	0.007	0.85	0.0	0.05	21.97	0.01	2.178	3.22	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.004	0.61	0.0	0.04	23.03	0.00	2.104	7.81	0.00	5.8	94.2	0.0	-1.34	1.27	0.72	0.79	2.09	20503	1839	16	290	1	0	0	logfile
✔	6oGZ	20060	2021-01-05	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.003	0.60	0.0	0.04	14.83	0.00	2.160	8.92	0.08	3.4	96.6	0.0	-1.97	1.44	0.46	0.85	2.32	74962	9081	14	35	2	0	0	logfile
✔	6HKo	0238	2021-01-07	2018-09-07	3.42	3.56	—	3.5	0.006	0.90	0.0	0.06	11.99	0.01	1.761	5.28	0.14	5.6	94.4	0.0	-4.42	0.73	0.83	3.57	3.5	0.002	0.61	0.0	0.04	14.18	0.00	2.033	9.87	0.08	3.3	96.7	0.0	-0.60	1.30	0.73	0.84	2.80	34518	4154	23	73	8	0	0	logfile
✔	6HLR	0240	2021-01-07	2018-09-11	3.18	3.30	—	3.3	0.008	0.94	0.0	0.06	12.28	0.01	1.734	4.70	0.15	4.9	95.1	0.0	-4.37	0.70	0.84	4.14	3.2	0.005	0.69	0.0	0.05	14.45	0.00	1.996	9.35	0.00	4.2	95.8	0.0	-0.38	1.64	0.72	0.86	3.48	32370	3881	21	73	8	0	0	logfile
✔	6HLS	0241	2021-01-06	2018-09-11	3.21	3.27	—	3.3	0.007	0.95	0.0	0.06	10.21	0.01	2.231	5.17	0.32	5.4	94.6	0.0	-4.54	0.64	0.82	4.01	3.3	0.003	0.63	0.0	0.04	13.27	0.00	2.113	8.90	0.00	3.6	96.4	0.0	-0.72	1.27	0.65	0.83	3.20	30954	3896	17	0	7	0	0	logfile
✔	6HLQ	0239	2021-01-07	2018-09-11	3.18	3.18	—	3.2	0.006	0.89	0.0	0.06	12.12	0.01	1.742	5.16	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.2	0.003	0.62	0.0	0.04	14.32	0.00	1.999	8.43	0.00	3.2	96.8	0.0	-0.48	0.71	0.69	0.84	3.67	32731	3926	22	73	9	0	0	logfile
✔	6BCQ	7085	2021-01-06	2017-10-20	3.25	3.34	—	3.3	0.007	1.00	0.0	0.05	9.82	0.01	2.318	3.48	0.25	5.5	94.5	0.0	-4.85	0.64	0.80	3.09	3.3	0.006	0.73	0.0	0.04	12.90	0.01	2.138	8.27	0.00	5.6	94.4	0.0	0.92	0.86	0.64	0.80	2.01	31048	3932	8	0	4	0	0	logfile
✔	6KiV	9999	2021-01-06	2019-07-20	4.0	4.16	—	4.0	0.007	0.89	0.0	0.05	22.53	0.01	2.263	5.16	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.63	0.0	0.04	23.13	0.00	2.097	11.88	0.06	5.6	94.4	0.0	-1.33	1.39	0.75	0.74	—	20719	1865	16	290	1	0	0	logfile
✔	6CVM	7770	2021-01-07	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.93	0.0	0.07	10.11	0.01	2.053	3.57	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.003	0.58	0.0	0.04	13.78	0.00	2.040	6.14	0.60	2.6	97.4	0.0	0.70	0.38	0.84	0.92	6.84	37062	4084	12	0	20	4194	0	logfile
✔	6MRU	9213	2021-01-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	12.27	0.00	2.209	3.00	0.00	0.9	99.1	0.0	5.56	3.08	0.74	0.84	2.05	29107	3705	13	0	0	0	0	logfile
✔	6oEN	20031	2021-01-06	2019-03-27	4.3	4.59	—	4.3	0.006	0.95	0.0	0.05	23.37	0.01	2.208	8.61	3.61	7.1	92.9	0.0	-3.86	0.85	0.83	—	4.3	0.003	0.64	0.0	0.04	21.88	0.00	2.111	17.17	0.00	6.2	93.8	0.0	-0.67	2.52	0.86	0.83	—	19649	1998	12	206	3	0	0	logfile

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