Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6E7C	8998	2021-08-07	2018-07-25	3.65	3.83	3.42	3.8	0.008	0.86	0.0	0.04	12.40	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6780	854	4	0	4	0	0	logfile
✔	6SP2	10279	2021-08-08	2019-08-30	3.33	3.92	3.50	3.8	0.010	1.07	0.0	0.23	13.88	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.003	0.66	0.0	0.04	14.84	0.00	2.195	6.06	0.48	3.7	96.3	0.0	2.78	1.51	0.65	0.81	1.54	18498	2190	12	0	24	0	0	logfile
✔	6o9R	0663	2021-08-27	2019-03-14	2.75	3.02	—	3.0	0.010	0.88	0.0	0.06	9.38	0.01	2.204	10.63	0.22	1.7	98.3	0.0	-1.28	0.77	0.88	6.11	3.0	0.005	0.64	0.0	0.04	14.47	0.00	2.138	8.09	2.03	2.1	97.9	0.0	-0.06	0.56	0.76	0.89	5.54	247980	31200	60	0	0	0	0	logfile
✔	6V1G	21011	2021-08-30	2019-11-20	2.98	3.20	—	3.2	0.011	0.85	0.0	0.05	9.89	0.01	2.044	13.32	0.22	2.1	97.9	0.0	-1.96	0.73	0.83	5.32	3.2	0.005	0.63	0.0	0.04	15.44	0.00	2.090	8.74	2.54	2.3	97.7	0.0	-0.78	0.59	0.73	0.85	4.50	249900	31200	120	120	0	0	0	logfile
✔	4UQ8	2676	2021-08-10	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.90	0.00	2.133	43.68	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile
✔	6Q2o	20576	2021-08-08	2019-08-08	3.65	3.77	—	3.9	0.004	0.78	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.94	0.0	0.05	15.12	0.01	1.996	18.95	0.60	7.9	92.1	0.0	-2.28	2.25	0.69	0.67	1.00	15196	1900	8	0	20	0	0	logfile
✔	6RiN	4892	2021-08-09	2019-04-24	3.7	4.07	—	4.0	0.009	0.99	0.0	0.06	11.25	0.01	1.995	13.45	0.07	13.6	86.3	0.0	-4.38	0.83	0.84	2.21	4.0	0.005	0.81	0.0	0.05	15.02	0.00	1.939	9.60	0.00	6.0	93.9	0.0	-0.48	1.35	0.83	0.85	1.70	27584	3363	10	59	3	0	0	logfile
✔	6DLU	7957	2021-08-08	2018-06-02	3.75	3.84	—	3.8	0.011	0.87	0.0	0.05	9.97	0.00	1.944	12.31	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.65	0.0	0.04	14.14	0.00	2.010	8.94	0.23	4.7	95.3	0.0	0.18	2.36	0.32	0.81	1.53	11991	1481	4	0	4	0	0	logfile
✔	6MRU	9213	2021-08-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	6MRT	9212	2021-08-08	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	6NE3	9356	2021-08-08	2018-12-16	3.9	3.77	—	3.7	0.008	0.95	0.0	0.05	28.16	0.01	2.287	6.25	0.48	6.9	93.1	0.0	-3.61	0.74	0.71	0.90	3.6	0.003	0.67	0.0	0.04	27.57	0.00	2.170	12.78	0.38	6.1	93.9	0.0	-0.18	0.57	0.80	0.81	0.91	16336	1245	11	312	1	0	0	logfile
✔	6oT0	20190	2021-08-08	2019-05-02	3.84	4.10	—	4.4	0.015	1.46	0.0	0.17	14.78	0.01	2.191	3.15	0.79	6.3	93.7	0.0	-3.15	0.53	0.75	0.80	4.4	0.003	0.93	0.0	0.07	16.50	0.00	2.171	16.94	0.62	5.2	94.8	0.0	-1.52	1.37	0.56	0.77	0.66	10572	1345	7	0	1	0	0	logfile
✔	6oEN	20031	2021-08-09	2019-03-27	4.3	4.59	—	4.3	0.006	0.95	0.0	0.05	23.37	0.01	2.208	8.61	3.61	7.1	92.9	0.0	-3.86	0.85	0.83	—	4.3	0.004	0.67	0.0	0.04	21.98	0.00	2.104	16.27	0.00	7.4	92.6	0.0	-0.84	2.53	0.86	0.83	—	19649	1998	12	206	3	0	0	logfile
✔	6MRW	9214	2021-08-09	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.010	0.88	2.0	0.03	12.02	0.00	2.102	6.81	0.03	2.1	97.9	0.0	6.08	0.67	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6E1H	8955	2021-08-08	2018-07-09	3.5	3.83	—	3.8	0.008	1.18	0.0	0.06	12.25	0.01	1.962	5.83	1.76	9.9	90.1	0.0	-3.67	0.60	0.75	2.52	3.8	0.006	0.98	0.0	0.05	16.15	0.01	1.898	20.57	0.51	8.3	91.7	0.0	-0.58	2.42	0.59	0.77	1.46	16667	2120	4	0	4	0	0	logfile
✔	6Q2R	20578	2021-08-10	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.78	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.74	0.0	0.04	11.58	0.00	2.019	20.71	0.00	7.3	92.7	0.0	-1.64	2.78	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	6H05	0108	2021-08-11	2018-07-06	2.9	3.15	—	3.5	0.016	1.10	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.2	0.008	1.06	0.0	0.05	15.53	0.01	1.620	23.84	1.82	5.3	94.7	0.0	-1.71	2.15	0.62	0.54	1.19	44544	5664	24	0	0	0	0	logfile
✔	6E7B	8997	2021-08-07	2018-07-25	3.5	3.67	3.28	3.7	0.007	0.84	0.0	0.04	11.53	0.00	2.009	5.71	0.14	6.5	93.5	0.0	-4.13	0.56	0.76	2.80	3.6	0.003	0.72	0.0	0.04	15.50	0.00	1.987	16.67	0.69	4.1	95.9	0.0	-1.13	0.98	0.58	0.80	1.96	6774	854	4	0	4	0	0	logfile
✔	6V12	21010	2021-08-29	2019-11-19	3.08	3.47	—	3.4	0.011	0.79	0.0	0.05	8.52	0.00	2.086	9.56	0.00	1.9	98.1	0.0	-1.73	0.70	0.88	5.15	3.4	0.007	0.68	0.0	0.04	14.47	0.00	2.106	8.62	0.88	3.3	96.6	0.2	-0.68	0.57	0.69	0.88	4.44	248700	31260	60	0	0	0	0	logfile
✔	6E7Y	9001	2021-08-08	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.18	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.6	0.003	0.71	0.0	0.04	14.43	0.00	2.337	5.69	0.35	5.0	95.0	0.0	-0.79	1.37	0.64	0.82	2.47	15508	1900	8	0	4	0	0	logfile

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