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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6T64 | 10384 | 2022-07-06 | 2019-10-17 | 3.7 | 3.73 | — | 3.7 | 0.006 | 0.87 | 0.0 | 0.05 | 15.20 | 0.01 | 2.307 | 7.58 | 0.53 | 6.0 | 94.0 | 0.0 | -3.28 | 0.50 | 0.76 | 2.25 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.44 | 0.00 | 2.225 | 9.61 | 0.30 | 5.8 | 94.2 | 0.0 | 1.20 | 1.40 | 0.51 | 0.78 | 1.58 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V38 | 21029 | 2022-07-06 | 2019-11-25 | 3.8 | 3.97 | — | 3.8 | 0.014 | 1.47 | 0.0 | 0.07 | 18.17 | 0.02 | 2.255 | 15.24 | 4.55 | 5.3 | 94.7 | 0.0 | -2.89 | 0.66 | 0.79 | 1.16 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 16.13 | 0.00 | 2.222 | 12.41 | 0.13 | 4.4 | 95.6 | 0.0 | -0.39 | 0.65 | 0.66 | 0.80 | 0.93 | 29152 | 3496 | 8 | 0 | 56 | 0 | 0 | logfile |
✔ | 3J5P | 5778 | 2022-07-04 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.28 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.5 | 0.003 | 0.88 | 0.0 | 0.04 | 17.12 | 0.00 | 2.147 | 17.88 | 0.35 | 5.2 | 94.8 | 0.0 | 0.56 | 2.07 | 0.73 | 0.79 | 0.76 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6CM9 | 7457 | 2022-07-04 | 2018-03-03 | 3.73 | 3.82 | — | 3.8 | 0.009 | 1.02 | 0.0 | 0.06 | 11.58 | 0.01 | 1.906 | 5.79 | 0.26 | 8.0 | 92.0 | 0.0 | -4.83 | 0.73 | 0.78 | 2.28 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 15.74 | 0.00 | 1.899 | 12.20 | 0.31 | 4.9 | 95.1 | 0.0 | -1.12 | 1.33 | 0.73 | 0.78 | 1.34 | 17683 | 2194 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 6P19 | 20234 | 2022-07-05 | 2019-05-19 | 3.8 | 3.94 | 3.94 | 3.8 | 0.008 | 0.92 | 0.0 | 0.06 | 16.49 | 0.01 | 2.061 | 8.03 | 0.46 | 6.1 | 93.9 | 0.0 | -3.93 | 0.84 | 0.82 | 1.62 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 17.46 | 0.00 | 2.002 | 13.85 | 0.21 | 4.6 | 95.4 | 0.0 | -0.76 | 0.55 | 0.84 | 0.81 | 1.26 | 27416 | 3323 | 10 | 66 | 3 | 0 | 0 | logfile |
✔ | 6N1i | 8903 | 2022-07-03 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 17.64 | 0.00 | 2.141 | 15.94 | 0.55 | 4.3 | 95.7 | 0.0 | -0.22 | 2.39 | 0.56 | 0.82 | 1.99 | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5K12 | 8194 | 2022-07-04 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.010 | 1.13 | 2.0 | 0.04 | 15.20 | 0.00 | 1.443 | 13.43 | 0.20 | 1.8 | 98.2 | 0.0 | 1.71 | 1.05 | 0.71 | 0.89 | 3.78 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✔ | 6V3G | 21036 | 2022-07-06 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.54 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.79 | 0.00 | 2.151 | 15.13 | 0.38 | 3.7 | 96.3 | 0.0 | -0.51 | 0.89 | 0.73 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Ni3 | 9376 | 2022-07-04 | 2018-12-26 | 3.8 | 4.22 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.07 | 10.58 | 0.01 | 1.201 | 4.73 | 0.23 | 5.3 | 94.7 | 0.0 | -2.86 | 0.75 | 0.76 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8136 | 1043 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6MDR | 9104 | 2022-07-06 | 2018-09-05 | 3.47 | 3.55 | — | 3.5 | 0.007 | 0.93 | 0.0 | 0.06 | 9.55 | 0.01 | 2.349 | 3.64 | 0.00 | 6.6 | 93.4 | 0.0 | -3.18 | 0.74 | 0.84 | 4.46 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 14.92 | 0.01 | 2.242 | 7.98 | 0.19 | 6.2 | 93.8 | 0.0 | -1.11 | 1.27 | 0.74 | 0.86 | 3.17 | 29456 | 3696 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JND | 9848 | 2022-07-03 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 4.09 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2022-07-03 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.48 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.003 | 0.58 | 0.0 | 0.05 | 15.72 | 0.00 | 2.278 | 6.21 | 0.59 | 3.1 | 96.9 | 0.0 | -1.13 | 1.79 | 0.52 | 0.88 | 2.22 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6HiN | 0225 | 2022-07-04 | 2018-08-30 | 4.1 | 4.24 | — | 4.2 | 0.009 | 1.15 | 0.0 | 0.07 | 11.82 | 0.01 | 1.347 | 6.61 | 0.32 | 1.5 | 98.5 | 0.0 | -4.98 | 0.81 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14220 | 1675 | 10 | 0 | 30 | 0 | 0 | logfile |
✔ | 6U7H | 20668 | 2022-07-05 | 2019-09-02 | 3.1 | 3.91 | 3.18 | 3.6 | 0.012 | 1.77 | 33.0 | 0.11 | 13.25 | 0.01 | 2.282 | 0.30 | 0.24 | 4.3 | 95.7 | 0.0 | -0.94 | 0.86 | 0.85 | 3.84 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 13.58 | 0.00 | 2.284 | 6.67 | 0.12 | 3.5 | 96.5 | 0.0 | 0.38 | 1.22 | 0.84 | 0.83 | 3.16 | 23394 | 2895 | 6 | 0 | 81 | 0 | 0 | logfile |
✔ | 5WJT | 8847 | 2022-07-06 | 2017-07-24 | 3.8 | 3.65 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.05 | 11.04 | 0.01 | 1.626 | 13.14 | 0.41 | 10.7 | 89.3 | 0.0 | -4.67 | 0.57 | 0.78 | 1.92 | 3.6 | 0.003 | 0.78 | 0.0 | 0.04 | 16.25 | 0.00 | 2.129 | 16.25 | 0.40 | 9.2 | 90.5 | 0.3 | 1.42 | 4.10 | 0.58 | 0.81 | 1.00 | 92947 | 12382 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oDV | 3785 | 2022-07-05 | 2017-07-06 | 4.0 | 4.43 | 4.14 | 4.4 | 0.008 | 0.80 | 0.0 | 0.05 | 10.27 | 0.01 | 1.941 | 6.34 | 0.00 | 13.2 | 86.8 | 0.0 | -4.48 | 0.50 | 0.73 | — | 4.4 | 0.004 | 0.66 | 0.0 | 0.04 | 16.21 | 0.00 | 1.924 | 9.85 | 0.69 | 8.6 | 91.4 | 0.0 | -2.22 | 1.14 | 0.53 | 0.82 | — | 82656 | 4968 | 48 | 120 | 0 | 0 | 40368 | logfile |
✔ | 6VQW | 21359 | 2022-07-04 | 2020-02-06 | 3.42 | 4.18 | — | 4.0 | 0.010 | 0.94 | 0.0 | 0.06 | 15.46 | 0.01 | 2.245 | 8.00 | 0.57 | 13.1 | 86.9 | 0.0 | -5.04 | 0.78 | 0.79 | 1.92 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.15 | 0.00 | 2.126 | 13.09 | 0.26 | 8.6 | 91.4 | 0.0 | -2.16 | 0.46 | 0.79 | 0.80 | 1.32 | 20479 | 2648 | 11 | 40 | 0 | 0 | 0 | logfile |
✔ | 3JAE | 6345 | 2022-07-03 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.25 | 0.0 | 0.05 | 9.25 | 0.01 | 2.202 | 13.89 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.85 | 0.0 | 0.04 | 13.60 | 0.00 | 2.000 | 16.30 | 0.08 | 2.9 | 97.1 | 0.0 | 0.14 | 1.48 | 0.72 | 0.82 | 1.52 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6B44 | 7048 | 2022-07-05 | 2017-09-25 | 2.9 | 3.00 | — | 3.0 | 0.006 | 0.99 | 0.0 | 0.06 | 14.77 | 0.01 | 2.237 | 5.60 | 0.43 | 11.4 | 88.6 | 0.0 | -4.46 | 0.65 | 0.77 | 3.33 | 3.0 | 0.004 | 0.67 | 0.0 | 0.04 | 17.23 | 0.00 | 2.122 | 10.68 | 2.54 | 9.2 | 90.8 | 0.0 | -1.84 | 0.99 | 0.65 | 0.79 | 2.64 | 22681 | 2879 | 12 | 114 | 0 | 0 | 0 | logfile |
✔ | 6B46 | 7050 | 2022-07-04 | 2017-09-25 | 3.1 | 3.16 | — | 3.1 | 0.006 | 0.87 | 0.0 | 0.05 | 12.04 | 0.01 | 2.296 | 4.30 | 0.18 | 8.5 | 91.5 | 0.0 | -3.95 | 0.69 | 0.82 | 3.45 | 3.1 | 0.011 | 1.03 | 2.0 | 0.04 | 15.13 | 0.01 | 2.117 | 10.70 | 0.06 | 8.7 | 91.3 | 0.0 | -1.51 | 0.54 | 0.71 | 0.84 | 2.85 | 18344 | 2308 | 10 | 60 | 0 | 0 | 0 | logfile |