Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MR1	23953	2023-11-17	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.74	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.68	0.0	0.04	14.81	0.00	2.159	12.63	0.00	7.5	92.4	0.0	-0.59	0.33	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	7MR4	23956	2023-11-17	2021-05-07	4.5	4.68	—	4.5	0.004	0.86	0.0	0.05	16.97	0.01	2.014	7.21	0.00	5.4	94.6	0.0	-1.71	0.82	0.81	—	4.5	0.003	0.62	0.0	0.04	16.75	0.00	2.159	14.62	0.06	6.1	93.9	0.0	-0.16	0.50	0.82	0.82	—	17203	2057	5	33	0	0	0	logfile
✔	7AP8	11850	2023-11-15	2020-10-16	3.15	3.74	—	3.3	0.003	0.55	0.0	0.04	11.91	0.00	2.018	3.39	1.76	5.4	94.6	0.0	0.12	0.88	0.82	3.38	3.3	0.003	0.53	0.0	0.04	13.50	0.00	1.907	6.52	0.14	6.5	93.5	0.0	0.24	0.68	0.89	0.84	3.18	62909	3782	15	42	5	0	31397	logfile
✘	6PM5	20388	2023-11-16	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	8AYM	15716	2023-11-16	2022-09-02	3.3	3.18	3.15	3.4	0.008	1.27	0.0	0.04	17.30	0.00	2.075	1.59	0.13	2.5	97.5	0.0	-0.77	0.69	0.77	2.81	3.4	0.003	0.49	0.0	0.04	16.57	0.00	2.101	6.75	0.38	2.2	97.8	0.0	1.15	0.64	0.71	0.84	2.76	15962	2008	12	0	28	0	0	logfile
✔	7K3B	22655	2023-11-17	2020-09-10	3.4	3.49	—	3.4	0.008	0.78	0.0	0.05	12.85	0.00	2.155	8.62	0.00	4.8	95.2	0.0	-0.19	0.82	0.85	3.08	3.4	0.003	0.66	0.0	0.05	15.16	0.00	2.149	10.29	0.34	4.4	95.6	0.0	-0.16	0.60	0.84	0.88	2.81	19038	2394	24	0	51	0	0	logfile
✔	7YZP	14393	2023-11-17	2022-02-21	4.0	4.15	4.02	4.0	0.003	0.62	1.0	0.04	17.63	0.00	1.593	8.32	0.00	4.2	95.8	0.0	0.73	0.83	0.78	—	4.0	0.002	0.62	0.0	0.04	19.17	0.00	2.009	11.00	0.43	3.9	96.1	0.0	0.75	0.37	0.84	0.79	—	14107	1633	9	59	8	0	0	logfile
✔	7RHZ	24472	2023-11-15	2021-07-19	4.48	7.32	5.01	7.0	0.020	1.62	32.0	0.18	21.07	0.01	2.015	9.11	0.59	3.5	96.5	0.0	-1.60	0.85	0.71	—	7.0	0.004	0.68	0.0	0.04	21.60	0.00	2.021	16.90	0.00	5.4	94.6	0.0	-0.26	2.89	0.88	0.77	—	12550	615	4	88	0	0	5875	logfile
✔	6VX6	21431	2023-11-16	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.003	0.61	0.0	0.04	16.35	0.00	2.069	7.45	1.38	1.4	98.6	0.0	0.77	0.98	0.77	0.89	3.36	15061	1830	10	0	6	0	0	logfile
✔	6PWW	20513	2023-11-21	2019-07-23	4.4	5.49	—	4.5	0.004	0.64	0.0	0.04	25.69	0.00	1.996	21.91	1.22	4.5	95.5	0.0	-2.62	0.92	0.84	—	4.5	0.004	0.72	0.0	0.04	25.35	0.00	2.030	26.86	0.00	5.1	94.9	0.0	-1.29	0.70	0.92	0.85	—	18174	1550	14	292	1	0	0	logfile
✘	7AP9	11851	2023-11-20	2020-10-16	3.01	3.70	—	3.2	0.008	0.68	0.0	0.05	12.00	0.00	2.023	4.33	2.91	6.9	93.1	0.0	-0.45	0.90	0.88	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30881	3782	14	11	5	0	0	logfile
✔	7YZo	14391	2023-11-17	2022-02-21	3.4	3.53	3.40	3.5	0.004	0.70	0.0	0.04	17.64	0.00	1.498	5.76	0.08	3.2	96.8	0.0	0.79	0.80	0.83	2.80	3.5	0.003	0.58	0.0	0.04	18.99	0.00	1.901	7.45	0.08	3.4	96.6	0.0	0.29	0.35	0.81	0.85	2.17	13068	1497	10	62	8	0	0	logfile
✔	7KEJ	22839	2023-11-16	2020-10-11	3.8	3.55	—	3.6	0.021	1.73	0.0	0.11	10.03	0.01	1.201	0.59	0.00	0.4	99.6	0.0	1.20	0.82	0.84	4.49	3.6	0.003	0.64	0.0	0.04	14.71	0.00	2.126	6.60	0.41	2.0	98.0	0.0	0.01	1.66	0.82	0.83	3.57	13806	1740	18	0	24	0	0	logfile
✔	7JV6	22494	2023-11-19	2020-08-20	3.0	3.20	3.11	3.2	0.014	1.41	0.0	0.09	10.09	0.01	2.402	0.75	0.00	2.8	97.2	0.0	0.65	0.71	0.72	3.26	3.1	0.004	0.63	0.0	0.05	14.65	0.00	2.187	6.66	3.09	3.1	96.9	0.0	0.00	0.63	0.76	0.79	2.82	26648	3612	24	0	60	0	0	logfile
✔	6WPS	21864	2023-11-19	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.34	0.0	0.09	10.40	0.01	2.364	0.29	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.003	0.63	0.0	0.04	14.78	0.00	2.061	7.88	0.14	2.9	97.1	0.0	-0.01	1.66	0.78	0.82	2.91	28116	3540	27	0	75	0	0	logfile
✔	6PCi	20301	2023-11-17	2019-06-17	4.12	4.25	—	4.1	0.009	1.05	0.0	0.06	8.96	0.01	2.268	6.36	0.00	6.8	93.2	0.0	-2.72	0.85	0.84	—	4.1	0.004	0.73	0.0	0.05	12.81	0.00	2.112	17.12	0.05	6.5	93.5	0.0	-0.84	0.84	0.85	0.84	—	18828	2382	24	0	27	0	0	logfile
✔	8FA2	28948	2023-11-13	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.04	14.46	0.00	2.218	8.87	0.67	0.0	100.0	0.0	5.30	0.38	0.76	0.79	0.78	2577	342	6	0	0	0	0	logfile
✔	5ZR1	6941	2023-11-18	2018-04-21	3.0	3.18	—	3.1	0.007	1.04	2.0	0.06	15.46	0.01	2.050	4.08	0.65	4.3	95.7	0.0	-5.16	0.77	0.84	3.94	3.1	0.004	0.62	1.0	0.04	18.47	0.00	1.890	7.79	2.39	3.6	96.4	0.0	-0.11	1.59	0.77	0.86	3.04	22260	2509	11	82	6	0	0	logfile
✔	6DZM	8936	2023-11-15	2018-07-05	4.29	4.66	—	4.3	0.008	0.96	0.0	0.05	9.60	0.01	2.058	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.003	0.76	0.0	0.05	12.09	0.00	2.177	14.52	0.00	8.9	91.1	0.0	-1.87	0.98	0.78	0.83	—	13584	1695	24	0	27	0	0	logfile
✔	7WoA	32646	2023-11-21	2022-01-21	3.25	2.98	—	3.2	0.002	0.45	0.0	0.04	8.94	0.00	2.229	6.56	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.67	0.0	0.05	13.80	0.00	2.135	10.52	0.43	7.5	92.5	0.0	-1.91	1.43	0.89	0.85	2.88	31952	4060	10	0	39	0	0	logfile

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