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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MR1 | 23953 | 2023-11-17 | 2021-05-07 | 4.2 | 4.74 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 14.91 | 0.01 | 2.237 | 5.74 | 0.00 | 5.5 | 94.5 | 0.0 | -1.78 | 0.85 | 0.84 | — | 4.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.159 | 12.63 | 0.00 | 7.5 | 92.4 | 0.0 | -0.59 | 0.33 | 0.85 | 0.84 | — | 18473 | 2316 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MR4 | 23956 | 2023-11-17 | 2021-05-07 | 4.5 | 4.68 | — | 4.5 | 0.004 | 0.86 | 0.0 | 0.05 | 16.97 | 0.01 | 2.014 | 7.21 | 0.00 | 5.4 | 94.6 | 0.0 | -1.71 | 0.82 | 0.81 | — | 4.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.75 | 0.00 | 2.159 | 14.62 | 0.06 | 6.1 | 93.9 | 0.0 | -0.16 | 0.50 | 0.82 | 0.82 | — | 17203 | 2057 | 5 | 33 | 0 | 0 | 0 | logfile |
✔ | 7AP8 | 11850 | 2023-11-15 | 2020-10-16 | 3.15 | 3.74 | — | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 11.91 | 0.00 | 2.018 | 3.39 | 1.76 | 5.4 | 94.6 | 0.0 | 0.12 | 0.88 | 0.82 | 3.38 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 13.50 | 0.00 | 1.907 | 6.52 | 0.14 | 6.5 | 93.5 | 0.0 | 0.24 | 0.68 | 0.89 | 0.84 | 3.18 | 62909 | 3782 | 15 | 42 | 5 | 0 | 31397 | logfile |
✘ | 6PM5 | 20388 | 2023-11-16 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 8AYM | 15716 | 2023-11-16 | 2022-09-02 | 3.3 | 3.18 | 3.15 | 3.4 | 0.008 | 1.27 | 0.0 | 0.04 | 17.30 | 0.00 | 2.075 | 1.59 | 0.13 | 2.5 | 97.5 | 0.0 | -0.77 | 0.69 | 0.77 | 2.81 | 3.4 | 0.003 | 0.49 | 0.0 | 0.04 | 16.57 | 0.00 | 2.101 | 6.75 | 0.38 | 2.2 | 97.8 | 0.0 | 1.15 | 0.64 | 0.71 | 0.84 | 2.76 | 15962 | 2008 | 12 | 0 | 28 | 0 | 0 | logfile |
✔ | 7K3B | 22655 | 2023-11-17 | 2020-09-10 | 3.4 | 3.49 | — | 3.4 | 0.008 | 0.78 | 0.0 | 0.05 | 12.85 | 0.00 | 2.155 | 8.62 | 0.00 | 4.8 | 95.2 | 0.0 | -0.19 | 0.82 | 0.85 | 3.08 | 3.4 | 0.003 | 0.66 | 0.0 | 0.05 | 15.16 | 0.00 | 2.149 | 10.29 | 0.34 | 4.4 | 95.6 | 0.0 | -0.16 | 0.60 | 0.84 | 0.88 | 2.81 | 19038 | 2394 | 24 | 0 | 51 | 0 | 0 | logfile |
✔ | 7YZP | 14393 | 2023-11-17 | 2022-02-21 | 4.0 | 4.15 | 4.02 | 4.0 | 0.003 | 0.62 | 1.0 | 0.04 | 17.63 | 0.00 | 1.593 | 8.32 | 0.00 | 4.2 | 95.8 | 0.0 | 0.73 | 0.83 | 0.78 | — | 4.0 | 0.002 | 0.62 | 0.0 | 0.04 | 19.17 | 0.00 | 2.009 | 11.00 | 0.43 | 3.9 | 96.1 | 0.0 | 0.75 | 0.37 | 0.84 | 0.79 | — | 14107 | 1633 | 9 | 59 | 8 | 0 | 0 | logfile |
✔ | 7RHZ | 24472 | 2023-11-15 | 2021-07-19 | 4.48 | 7.32 | 5.01 | 7.0 | 0.020 | 1.62 | 32.0 | 0.18 | 21.07 | 0.01 | 2.015 | 9.11 | 0.59 | 3.5 | 96.5 | 0.0 | -1.60 | 0.85 | 0.71 | — | 7.0 | 0.004 | 0.68 | 0.0 | 0.04 | 21.60 | 0.00 | 2.021 | 16.90 | 0.00 | 5.4 | 94.6 | 0.0 | -0.26 | 2.89 | 0.88 | 0.77 | — | 12550 | 615 | 4 | 88 | 0 | 0 | 5875 | logfile |
✔ | 6VX6 | 21431 | 2023-11-16 | 2020-02-21 | 3.0 | 3.24 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.05 | 14.09 | 0.00 | 2.260 | 4.77 | 0.94 | 1.9 | 98.1 | 0.0 | -5.69 | 0.76 | 0.87 | 3.72 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.35 | 0.00 | 2.069 | 7.45 | 1.38 | 1.4 | 98.6 | 0.0 | 0.77 | 0.98 | 0.77 | 0.89 | 3.36 | 15061 | 1830 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PWW | 20513 | 2023-11-21 | 2019-07-23 | 4.4 | 5.49 | — | 4.5 | 0.004 | 0.64 | 0.0 | 0.04 | 25.69 | 0.00 | 1.996 | 21.91 | 1.22 | 4.5 | 95.5 | 0.0 | -2.62 | 0.92 | 0.84 | — | 4.5 | 0.004 | 0.72 | 0.0 | 0.04 | 25.35 | 0.00 | 2.030 | 26.86 | 0.00 | 5.1 | 94.9 | 0.0 | -1.29 | 0.70 | 0.92 | 0.85 | — | 18174 | 1550 | 14 | 292 | 1 | 0 | 0 | logfile |
✘ | 7AP9 | 11851 | 2023-11-20 | 2020-10-16 | 3.01 | 3.70 | — | 3.2 | 0.008 | 0.68 | 0.0 | 0.05 | 12.00 | 0.00 | 2.023 | 4.33 | 2.91 | 6.9 | 93.1 | 0.0 | -0.45 | 0.90 | 0.88 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30881 | 3782 | 14 | 11 | 5 | 0 | 0 | logfile |
✔ | 7YZo | 14391 | 2023-11-17 | 2022-02-21 | 3.4 | 3.53 | 3.40 | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 17.64 | 0.00 | 1.498 | 5.76 | 0.08 | 3.2 | 96.8 | 0.0 | 0.79 | 0.80 | 0.83 | 2.80 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 18.99 | 0.00 | 1.901 | 7.45 | 0.08 | 3.4 | 96.6 | 0.0 | 0.29 | 0.35 | 0.81 | 0.85 | 2.17 | 13068 | 1497 | 10 | 62 | 8 | 0 | 0 | logfile |
✔ | 7KEJ | 22839 | 2023-11-16 | 2020-10-11 | 3.8 | 3.55 | — | 3.6 | 0.021 | 1.73 | 0.0 | 0.11 | 10.03 | 0.01 | 1.201 | 0.59 | 0.00 | 0.4 | 99.6 | 0.0 | 1.20 | 0.82 | 0.84 | 4.49 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.71 | 0.00 | 2.126 | 6.60 | 0.41 | 2.0 | 98.0 | 0.0 | 0.01 | 1.66 | 0.82 | 0.83 | 3.57 | 13806 | 1740 | 18 | 0 | 24 | 0 | 0 | logfile |
✔ | 7JV6 | 22494 | 2023-11-19 | 2020-08-20 | 3.0 | 3.20 | 3.11 | 3.2 | 0.014 | 1.41 | 0.0 | 0.09 | 10.09 | 0.01 | 2.402 | 0.75 | 0.00 | 2.8 | 97.2 | 0.0 | 0.65 | 0.71 | 0.72 | 3.26 | 3.1 | 0.004 | 0.63 | 0.0 | 0.05 | 14.65 | 0.00 | 2.187 | 6.66 | 3.09 | 3.1 | 96.9 | 0.0 | 0.00 | 0.63 | 0.76 | 0.79 | 2.82 | 26648 | 3612 | 24 | 0 | 60 | 0 | 0 | logfile |
✔ | 6WPS | 21864 | 2023-11-19 | 2020-04-27 | 3.1 | 3.36 | 3.25 | 3.3 | 0.013 | 1.34 | 0.0 | 0.09 | 10.40 | 0.01 | 2.364 | 0.29 | 0.10 | 2.4 | 97.6 | 0.0 | 0.67 | 0.73 | 0.74 | 3.01 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 14.78 | 0.00 | 2.061 | 7.88 | 0.14 | 2.9 | 97.1 | 0.0 | -0.01 | 1.66 | 0.78 | 0.82 | 2.91 | 28116 | 3540 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 6PCi | 20301 | 2023-11-17 | 2019-06-17 | 4.12 | 4.25 | — | 4.1 | 0.009 | 1.05 | 0.0 | 0.06 | 8.96 | 0.01 | 2.268 | 6.36 | 0.00 | 6.8 | 93.2 | 0.0 | -2.72 | 0.85 | 0.84 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 12.81 | 0.00 | 2.112 | 17.12 | 0.05 | 6.5 | 93.5 | 0.0 | -0.84 | 0.84 | 0.85 | 0.84 | — | 18828 | 2382 | 24 | 0 | 27 | 0 | 0 | logfile |
✔ | 8FA2 | 28948 | 2023-11-13 | 2022-11-25 | 2.82 | 2.48 | 3.15 | 2.1 | 0.006 | 0.55 | 0.0 | 0.04 | 13.54 | 0.00 | 2.297 | 6.56 | 0.00 | 1.8 | 98.2 | 0.0 | -0.12 | 0.76 | 0.79 | 0.72 | 2.0 | 0.003 | 0.45 | 0.0 | 0.04 | 14.46 | 0.00 | 2.218 | 8.87 | 0.67 | 0.0 | 100.0 | 0.0 | 5.30 | 0.38 | 0.76 | 0.79 | 0.78 | 2577 | 342 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZR1 | 6941 | 2023-11-18 | 2018-04-21 | 3.0 | 3.18 | — | 3.1 | 0.007 | 1.04 | 2.0 | 0.06 | 15.46 | 0.01 | 2.050 | 4.08 | 0.65 | 4.3 | 95.7 | 0.0 | -5.16 | 0.77 | 0.84 | 3.94 | 3.1 | 0.004 | 0.62 | 1.0 | 0.04 | 18.47 | 0.00 | 1.890 | 7.79 | 2.39 | 3.6 | 96.4 | 0.0 | -0.11 | 1.59 | 0.77 | 0.86 | 3.04 | 22260 | 2509 | 11 | 82 | 6 | 0 | 0 | logfile |
✔ | 6DZM | 8936 | 2023-11-15 | 2018-07-05 | 4.29 | 4.66 | — | 4.3 | 0.008 | 0.96 | 0.0 | 0.05 | 9.60 | 0.01 | 2.058 | 8.59 | 0.00 | 13.6 | 86.4 | 0.0 | -4.76 | 0.77 | 0.80 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.05 | 12.09 | 0.00 | 2.177 | 14.52 | 0.00 | 8.9 | 91.1 | 0.0 | -1.87 | 0.98 | 0.78 | 0.83 | — | 13584 | 1695 | 24 | 0 | 27 | 0 | 0 | logfile |
✔ | 7WoA | 32646 | 2023-11-21 | 2022-01-21 | 3.25 | 2.98 | — | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 8.94 | 0.00 | 2.229 | 6.56 | 4.23 | 3.8 | 96.2 | 0.0 | -3.46 | 0.86 | 0.78 | 2.52 | 3.2 | 0.004 | 0.67 | 0.0 | 0.05 | 13.80 | 0.00 | 2.135 | 10.52 | 0.43 | 7.5 | 92.5 | 0.0 | -1.91 | 1.43 | 0.89 | 0.85 | 2.88 | 31952 | 4060 | 10 | 0 | 39 | 0 | 0 | logfile |