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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8A8V | 15241 | 2023-04-28 | 2022-06-24 | 3.34 | 3.62 | 3.37 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 15.57 | 0.01 | 2.208 | 8.03 | 0.11 | 3.5 | 96.5 | 0.0 | -0.58 | 0.75 | 0.79 | 1.81 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.86 | 0.00 | 2.175 | 11.46 | 0.35 | 3.2 | 96.8 | 0.0 | 0.71 | 0.42 | 0.76 | 0.83 | 1.53 | 27164 | 3396 | 13 | 0 | 33 | 0 | 0 | logfile |
✔ | 6Z1U | 11040 | 2023-04-23 | 2020-05-14 | 3.47 | 3.57 | 3.25 | 3.5 | 0.008 | 0.74 | 0.0 | 0.05 | 14.81 | 0.00 | 1.905 | 11.83 | 0.00 | 8.9 | 91.1 | 0.0 | -1.62 | 0.68 | 0.83 | 2.33 | 3.5 | 0.006 | 0.58 | 0.0 | 0.04 | 15.72 | 0.00 | 1.662 | 9.48 | 0.06 | 6.5 | 93.5 | 0.0 | -0.44 | 0.37 | 0.68 | 0.85 | 2.15 | 65073 | 4239 | 32 | 0 | 11 | 17 | 32803 | logfile |
✔ | 6o85 | 0651 | 2023-04-28 | 2019-03-08 | 3.03 | 3.40 | — | 3.4 | 0.005 | 0.87 | 0.0 | 0.15 | 12.43 | 0.01 | 2.239 | 3.91 | 0.89 | 4.6 | 95.4 | 0.0 | -3.78 | 0.67 | 0.65 | 0.33 | 3.3 | 0.004 | 0.68 | 0.0 | 0.05 | 14.66 | 0.00 | 2.183 | 9.67 | 0.46 | 4.5 | 95.5 | 0.0 | 0.03 | 1.05 | 0.77 | 0.87 | 2.75 | 28576 | 4100 | 14 | 0 | 15 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-04-28 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HJN | 0234 | 2023-04-22 | 2018-09-04 | 3.3 | 3.88 | 3.28 | 3.6 | 0.008 | 1.23 | 3.0 | 0.11 | 12.09 | 0.02 | 1.734 | 5.04 | 2.80 | 8.9 | 91.1 | 0.0 | -3.22 | 0.91 | 0.91 | 4.09 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 14.00 | 0.00 | 2.096 | 6.24 | 0.16 | 8.3 | 91.7 | 0.0 | -0.32 | 0.55 | 0.89 | 0.89 | 3.27 | 12309 | 1488 | 24 | 0 | 48 | 0 | 0 | logfile |
✔ | 7TPK | 26058 | 2023-04-19 | 2022-01-25 | 3.4 | 3.41 | — | 3.4 | 0.011 | 1.40 | 1.0 | 0.08 | 9.69 | 0.01 | 2.528 | 2.12 | 0.00 | 4.7 | 95.3 | 0.0 | -0.98 | 0.60 | 0.72 | 4.39 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.27 | 0.00 | 2.331 | 4.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.45 | 1.26 | 0.65 | 0.81 | 3.26 | 1484 | 194 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7THK | 25896 | 2023-04-26 | 2022-01-11 | 3.11 | 3.36 | 3.15 | 3.4 | 0.009 | 1.34 | 13.0 | 0.08 | 13.27 | 0.01 | 2.312 | 1.77 | 0.44 | 4.4 | 95.6 | 0.0 | -1.63 | 0.71 | 0.78 | 2.87 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.01 | 0.00 | 2.155 | 7.44 | 0.36 | 3.1 | 96.9 | 0.0 | 0.35 | 1.01 | 0.73 | 0.87 | 3.12 | 23191 | 2925 | 6 | 0 | 38 | 0 | 0 | logfile |
✔ | 7KKK | 22907 | 2023-04-19 | 2020-10-27 | 3.03 | 3.38 | 3.82 | 3.3 | 0.021 | 1.74 | 3.0 | 0.12 | 10.44 | 0.01 | 2.364 | 0.75 | 0.21 | 1.8 | 98.2 | 0.0 | 0.60 | 0.63 | 0.82 | 3.30 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 14.50 | 0.00 | 1.873 | 4.96 | 0.28 | 1.9 | 98.1 | 0.0 | 0.57 | 1.49 | 0.62 | 0.84 | 3.19 | 52320 | 3360 | 21 | 0 | 54 | 0 | 25449 | logfile |
✔ | 6oDJ | 20021 | 2023-04-27 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 6XS6 | 22301 | 2023-04-24 | 2020-07-15 | 3.7 | 2.21 | — | 2.2 | 0.004 | 0.83 | 0.0 | 0.05 | 14.26 | 0.01 | 2.240 | 4.49 | 0.00 | 6.1 | 93.9 | 0.0 | -1.99 | 0.57 | 0.59 | 2.30 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 2.160 | 8.43 | 0.15 | 5.1 | 94.9 | 0.0 | -0.95 | 0.37 | 0.57 | 0.59 | 2.19 | 18294 | 2357 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PEA | 13350 | 2023-04-21 | 2021-08-09 | 4.07 | 4.50 | — | 4.2 | 0.002 | 0.47 | 0.0 | 0.04 | 14.27 | 0.00 | 2.239 | 3.98 | 4.24 | 4.7 | 95.3 | 0.0 | -2.53 | 0.84 | 0.72 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.32 | 0.00 | 2.113 | 10.69 | 0.02 | 3.1 | 96.8 | 0.0 | 0.90 | 1.47 | 0.86 | 0.76 | — | 58252 | 7222 | 10 | 0 | 114 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2023-04-19 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.15 | 0.00 | 2.112 | 11.82 | 0.29 | 2.8 | 97.2 | 0.0 | 0.86 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6ZiK | 11227 | 2023-04-20 | 2020-06-26 | 3.66 | 3.14 | 3.54 | 3.4 | 0.005 | 0.73 | 0.0 | 0.04 | 14.23 | 0.00 | 2.134 | 10.04 | 0.00 | 2.0 | 98.0 | 0.0 | 1.08 | 0.55 | 0.78 | 2.12 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.45 | 0.00 | 2.197 | 9.40 | 0.13 | 1.4 | 98.6 | 0.0 | 1.92 | 0.44 | 0.56 | 0.78 | 1.39 | 7735 | 1048 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2023-04-20 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 14.02 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.036 | 3.37 | 11.0 | 0.30 | 17.01 | 0.01 | 0.291 | 9.27 | 1.09 | 1.7 | 98.2 | 0.1 | 1.92 | 1.13 | 0.69 | 0.81 | 2.58 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6KNF | 0730 | 2023-04-20 | 2019-08-05 | 2.99 | 3.24 | — | 3.2 | 0.007 | 0.63 | 0.0 | 0.05 | 15.04 | 0.00 | 2.015 | 7.65 | 8.82 | 3.6 | 96.4 | 0.0 | -2.46 | 0.83 | 0.91 | 4.90 | 3.2 | 0.005 | 0.58 | 0.0 | 0.05 | 15.52 | 0.00 | 2.017 | 7.00 | 5.51 | 1.7 | 98.3 | 0.0 | -0.70 | 0.93 | 0.83 | 0.92 | 4.37 | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8E2F | 27834 | 2023-04-22 | 2022-08-15 | 2.47 | 2.75 | 2.45 | 2.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.35 | 0.00 | 2.040 | 6.66 | 1.58 | 3.0 | 97.0 | 0.0 | 1.05 | 0.58 | 0.82 | 4.21 | 2.7 | 0.004 | 0.57 | 0.0 | 0.04 | 16.59 | 0.00 | 1.823 | 6.66 | 1.73 | 2.7 | 97.3 | 0.0 | 1.68 | 0.37 | 0.61 | 0.84 | 3.95 | 12305 | 771 | 1 | 0 | 0 | 0 | 6207 | logfile |
✔ | 7WS2 | 32741 | 2023-04-20 | 2022-01-28 | 3.3 | 3.22 | — | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.31 | 0.01 | 2.258 | 7.21 | 0.00 | 3.5 | 96.5 | 0.0 | -1.86 | 0.68 | 0.78 | 3.08 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.21 | 0.00 | 2.132 | 8.44 | 0.55 | 6.8 | 93.2 | 0.0 | -1.79 | 0.46 | 0.69 | 0.82 | 3.35 | 3343 | 431 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z1R | 11039 | 2023-04-23 | 2020-05-14 | 3.29 | 3.42 | 3.09 | 3.3 | 0.007 | 0.71 | 0.0 | 0.04 | 15.07 | 0.00 | 1.890 | 9.22 | 0.00 | 6.6 | 93.4 | 0.0 | -1.25 | 0.69 | 0.83 | 2.88 | 3.3 | 0.005 | 0.57 | 0.0 | 0.04 | 16.00 | 0.00 | 1.691 | 7.88 | 0.09 | 5.2 | 94.8 | 0.0 | 0.03 | 1.54 | 0.70 | 0.86 | 2.49 | 65754 | 4278 | 32 | 0 | 11 | 17 | 33137 | logfile |
✔ | 6X6K | 22076 | 2023-04-21 | 2020-05-28 | 3.1 | 3.22 | — | 3.2 | 0.011 | 1.23 | 2.0 | 0.07 | 13.77 | 0.01 | 2.210 | 8.21 | 0.00 | 5.5 | 94.5 | 0.0 | -1.94 | 0.69 | 0.84 | 2.88 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 16.58 | 0.00 | 2.126 | 16.02 | 0.31 | 5.4 | 94.6 | 0.0 | -0.16 | 0.63 | 0.70 | 0.85 | 2.39 | 60970 | 7602 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T9i | 25758 | 2023-04-26 | 2021-12-19 | 2.9 | 2.43 | — | 1.9 | 0.005 | 0.91 | 1.0 | 0.05 | 12.76 | 0.01 | 2.016 | 3.30 | 0.62 | 3.6 | 96.4 | 0.0 | -0.16 | 0.69 | 0.63 | 2.32 | 1.8 | 0.004 | 0.67 | 0.0 | 0.04 | 15.11 | 0.00 | 1.904 | 9.43 | 2.50 | 6.3 | 93.7 | 0.0 | -0.52 | 1.14 | 0.74 | 0.72 | 2.51 | 23529 | 1532 | 11 | 0 | 8 | 0 | 11557 | logfile |