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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6N1R | 9318 | 2021-01-07 | 2018-11-10 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 8.46 | 0.01 | 0.296 | 17.74 | 0.00 | 8.7 | 91.3 | 0.0 | -2.90 | 0.80 | 0.71 | — | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 11.08 | 0.00 | 2.152 | 13.22 | 0.00 | 5.2 | 94.8 | 0.0 | 0.86 | 0.84 | 0.81 | 0.75 | — | 46044 | 5796 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NE3 | 9356 | 2021-01-06 | 2018-12-16 | 3.9 | 3.77 | — | 3.7 | 0.008 | 0.95 | 0.0 | 0.05 | 28.16 | 0.01 | 2.287 | 6.25 | 0.48 | 6.9 | 93.1 | 0.0 | -3.61 | 0.74 | 0.71 | 0.90 | 3.6 | 0.005 | 0.69 | 0.0 | 0.04 | 27.04 | 0.00 | 2.137 | 13.28 | 0.00 | 7.7 | 92.3 | 0.0 | -0.56 | 0.58 | 0.80 | 0.80 | 1.15 | 16336 | 1245 | 11 | 312 | 1 | 0 | 0 | logfile |
✔ | 6QS4 | 4621 | 2021-01-06 | 2019-02-20 | 4.2 | 7.28 | 4.28 | 6.5 | 0.009 | 1.08 | 0.0 | 0.06 | 10.54 | 0.01 | 2.235 | 8.01 | 0.10 | 8.4 | 91.6 | 0.0 | -3.77 | 0.83 | 0.65 | — | 6.5 | 0.003 | 0.65 | 0.0 | 0.04 | 12.10 | 0.00 | 2.135 | 19.37 | 0.03 | 5.5 | 94.5 | 0.0 | 0.44 | 2.04 | 0.91 | 0.84 | — | 28839 | 3622 | 13 | 0 | 11 | 0 | 0 | logfile |
✔ | 6MSM | 9230 | 2021-01-05 | 2018-10-16 | 3.2 | 3.50 | — | 3.7 | 0.012 | 1.58 | 1.0 | 0.22 | 13.97 | 0.01 | 1.955 | 7.53 | 0.39 | 4.2 | 95.8 | 0.0 | -2.75 | 0.53 | 0.75 | 2.57 | 3.7 | 0.003 | 0.77 | 0.0 | 0.07 | 14.25 | 0.00 | 2.007 | 6.36 | 0.00 | 2.8 | 97.2 | 0.0 | 0.93 | 0.77 | 0.61 | 0.82 | 2.50 | 9703 | 1181 | 3 | 0 | 27 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2021-01-05 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.013 | 1.36 | 0.0 | 0.07 | 9.02 | 0.01 | 2.250 | 16.45 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.003 | 0.76 | 0.0 | 0.04 | 12.02 | 0.00 | 2.123 | 16.91 | 0.00 | 4.7 | 95.3 | 0.0 | 0.57 | 1.28 | 0.70 | 0.77 | 0.37 | 12705 | 1685 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2021-01-05 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.015 | 1.30 | 0.0 | 0.41 | 10.07 | 0.01 | 2.134 | 18.84 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.22 | 0.0 | 0.13 | 12.50 | 0.00 | 2.177 | 16.38 | 0.00 | 3.1 | 96.9 | 0.0 | 0.39 | 1.83 | 0.72 | 0.81 | 1.19 | 13865 | 1710 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 6KiW | 0693 | 2021-01-06 | 2019-07-20 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 22.54 | 0.01 | 2.182 | 4.29 | 0.00 | 9.1 | 90.9 | 0.0 | -3.96 | 0.70 | 0.74 | — | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 23.05 | 0.00 | 2.102 | 11.74 | 0.00 | 7.6 | 92.4 | 0.0 | -1.21 | 0.78 | 0.70 | 0.73 | — | 20225 | 1809 | 16 | 289 | 1 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2021-01-05 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 7.82 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.4 | 0.006 | 0.80 | 0.0 | 0.05 | 14.46 | 0.00 | 2.270 | 6.57 | 0.25 | 6.7 | 93.3 | 0.0 | -3.47 | 3.76 | 0.37 | 0.77 | 3.84 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KiX | 0694 | 2021-01-06 | 2019-07-20 | 4.1 | 4.17 | — | 4.1 | 0.006 | 0.83 | 0.0 | 0.05 | 22.57 | 0.01 | 2.219 | 3.30 | 0.00 | 8.6 | 91.4 | 0.0 | -3.74 | 0.71 | 0.73 | — | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 22.97 | 0.00 | 2.190 | 9.38 | 0.00 | 4.1 | 95.9 | 0.0 | -1.17 | 0.88 | 0.71 | 0.72 | — | 19900 | 1763 | 15 | 290 | 1 | 0 | 0 | logfile |
✔ | 6KiU | 9998 | 2021-01-06 | 2019-07-20 | 3.2 | 3.29 | — | 3.2 | 0.007 | 0.85 | 0.0 | 0.05 | 21.97 | 0.01 | 2.178 | 3.22 | 0.00 | 6.6 | 93.4 | 0.0 | -3.67 | 0.72 | 0.78 | 2.19 | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 23.03 | 0.00 | 2.104 | 7.81 | 0.00 | 5.8 | 94.2 | 0.0 | -1.34 | 1.27 | 0.72 | 0.79 | 2.09 | 20503 | 1839 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6oGZ | 20060 | 2021-01-05 | 2019-04-03 | 3.6 | 3.85 | — | 3.8 | 0.008 | 0.90 | 0.0 | 0.06 | 15.78 | 0.01 | 2.244 | 5.40 | 0.17 | 4.2 | 95.8 | 0.0 | -5.51 | 0.47 | 0.86 | 2.42 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 14.83 | 0.00 | 2.160 | 8.92 | 0.08 | 3.4 | 96.6 | 0.0 | -1.97 | 1.44 | 0.46 | 0.85 | 2.32 | 74962 | 9081 | 14 | 35 | 2 | 0 | 0 | logfile |
✔ | 6HKo | 0238 | 2021-01-07 | 2018-09-07 | 3.42 | 3.56 | — | 3.5 | 0.006 | 0.90 | 0.0 | 0.06 | 11.99 | 0.01 | 1.761 | 5.28 | 0.14 | 5.6 | 94.4 | 0.0 | -4.42 | 0.73 | 0.83 | 3.57 | 3.5 | 0.002 | 0.61 | 0.0 | 0.04 | 14.18 | 0.00 | 2.033 | 9.87 | 0.08 | 3.3 | 96.7 | 0.0 | -0.60 | 1.30 | 0.73 | 0.84 | 2.80 | 34518 | 4154 | 23 | 73 | 8 | 0 | 0 | logfile |
✔ | 6HLR | 0240 | 2021-01-07 | 2018-09-11 | 3.18 | 3.30 | — | 3.3 | 0.008 | 0.94 | 0.0 | 0.06 | 12.28 | 0.01 | 1.734 | 4.70 | 0.15 | 4.9 | 95.1 | 0.0 | -4.37 | 0.70 | 0.84 | 4.14 | 3.2 | 0.005 | 0.69 | 0.0 | 0.05 | 14.45 | 0.00 | 1.996 | 9.35 | 0.00 | 4.2 | 95.8 | 0.0 | -0.38 | 1.64 | 0.72 | 0.86 | 3.48 | 32370 | 3881 | 21 | 73 | 8 | 0 | 0 | logfile |
✔ | 6HLS | 0241 | 2021-01-06 | 2018-09-11 | 3.21 | 3.27 | — | 3.3 | 0.007 | 0.95 | 0.0 | 0.06 | 10.21 | 0.01 | 2.231 | 5.17 | 0.32 | 5.4 | 94.6 | 0.0 | -4.54 | 0.64 | 0.82 | 4.01 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 13.27 | 0.00 | 2.113 | 8.90 | 0.00 | 3.6 | 96.4 | 0.0 | -0.72 | 1.27 | 0.65 | 0.83 | 3.20 | 30954 | 3896 | 17 | 0 | 7 | 0 | 0 | logfile |
✔ | 6HLQ | 0239 | 2021-01-07 | 2018-09-11 | 3.18 | 3.18 | — | 3.2 | 0.006 | 0.89 | 0.0 | 0.06 | 12.12 | 0.01 | 1.742 | 5.16 | 0.09 | 4.6 | 95.4 | 0.0 | -4.49 | 0.68 | 0.82 | 4.22 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.32 | 0.00 | 1.999 | 8.43 | 0.00 | 3.2 | 96.8 | 0.0 | -0.48 | 0.71 | 0.69 | 0.84 | 3.67 | 32731 | 3926 | 22 | 73 | 9 | 0 | 0 | logfile |
✔ | 6BCQ | 7085 | 2021-01-06 | 2017-10-20 | 3.25 | 3.34 | — | 3.3 | 0.007 | 1.00 | 0.0 | 0.05 | 9.82 | 0.01 | 2.318 | 3.48 | 0.25 | 5.5 | 94.5 | 0.0 | -4.85 | 0.64 | 0.80 | 3.09 | 3.3 | 0.006 | 0.73 | 0.0 | 0.04 | 12.90 | 0.01 | 2.138 | 8.27 | 0.00 | 5.6 | 94.4 | 0.0 | 0.92 | 0.86 | 0.64 | 0.80 | 2.01 | 31048 | 3932 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6KiV | 9999 | 2021-01-06 | 2019-07-20 | 4.0 | 4.16 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 22.53 | 0.01 | 2.263 | 5.16 | 0.00 | 9.6 | 90.4 | 0.0 | -3.80 | 0.75 | 0.75 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 23.13 | 0.00 | 2.097 | 11.88 | 0.06 | 5.6 | 94.4 | 0.0 | -1.33 | 1.39 | 0.75 | 0.74 | — | 20719 | 1865 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6CVM | 7770 | 2021-01-07 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.93 | 0.0 | 0.07 | 10.11 | 0.01 | 2.053 | 3.57 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 13.78 | 0.00 | 2.040 | 6.14 | 0.60 | 2.6 | 97.4 | 0.0 | 0.70 | 0.38 | 0.84 | 0.92 | 6.84 | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✔ | 6MRU | 9213 | 2021-01-08 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.003 | 0.47 | 0.0 | 0.03 | 12.27 | 0.00 | 2.209 | 3.00 | 0.00 | 0.9 | 99.1 | 0.0 | 5.56 | 3.08 | 0.74 | 0.84 | 2.05 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEN | 20031 | 2021-01-06 | 2019-03-27 | 4.3 | 4.59 | — | 4.3 | 0.006 | 0.95 | 0.0 | 0.05 | 23.37 | 0.01 | 2.208 | 8.61 | 3.61 | 7.1 | 92.9 | 0.0 | -3.86 | 0.85 | 0.83 | — | 4.3 | 0.003 | 0.64 | 0.0 | 0.04 | 21.88 | 0.00 | 2.111 | 17.17 | 0.00 | 6.2 | 93.8 | 0.0 | -0.67 | 2.52 | 0.86 | 0.83 | — | 19649 | 1998 | 12 | 206 | 3 | 0 | 0 | logfile |