Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T64	10384	2022-07-06	2019-10-17	3.7	3.73	—	3.7	0.006	0.87	0.0	0.05	15.20	0.01	2.307	7.58	0.53	6.0	94.0	0.0	-3.28	0.50	0.76	2.25	3.7	0.003	0.67	0.0	0.04	16.44	0.00	2.225	9.61	0.30	5.8	94.2	0.0	1.20	1.40	0.51	0.78	1.58	30978	3906	18	0	0	0	0	logfile
✔	6V38	21029	2022-07-06	2019-11-25	3.8	3.97	—	3.8	0.014	1.47	0.0	0.07	18.17	0.02	2.255	15.24	4.55	5.3	94.7	0.0	-2.89	0.66	0.79	1.16	3.8	0.003	0.60	0.0	0.04	16.13	0.00	2.222	12.41	0.13	4.4	95.6	0.0	-0.39	0.65	0.66	0.80	0.93	29152	3496	8	0	56	0	0	logfile
✔	3J5P	5778	2022-07-04	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.28	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.12	0.00	2.147	17.88	0.35	5.2	94.8	0.0	0.56	2.07	0.73	0.79	0.76	18636	2324	4	0	44	0	0	logfile
✔	6CM9	7457	2022-07-04	2018-03-03	3.73	3.82	—	3.8	0.009	1.02	0.0	0.06	11.58	0.01	1.906	5.79	0.26	8.0	92.0	0.0	-4.83	0.73	0.78	2.28	3.8	0.004	0.71	0.0	0.04	15.74	0.00	1.899	12.20	0.31	4.9	95.1	0.0	-1.12	1.33	0.73	0.78	1.34	17683	2194	11	0	4	0	0	logfile
✔	6P19	20234	2022-07-05	2019-05-19	3.8	3.94	3.94	3.8	0.008	0.92	0.0	0.06	16.49	0.01	2.061	8.03	0.46	6.1	93.9	0.0	-3.93	0.84	0.82	1.62	3.8	0.003	0.67	0.0	0.04	17.46	0.00	2.002	13.85	0.21	4.6	95.4	0.0	-0.76	0.55	0.84	0.81	1.26	27416	3323	10	66	3	0	0	logfile
✔	6N1i	8903	2022-07-03	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.004	0.77	0.0	0.04	17.64	0.00	2.141	15.94	0.55	4.3	95.7	0.0	-0.22	2.39	0.56	0.82	1.99	11136	1360	16	0	0	0	0	logfile
✔	5K12	8194	2022-07-04	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.010	1.13	2.0	0.04	15.20	0.00	1.443	13.43	0.20	1.8	98.2	0.0	1.71	1.05	0.71	0.89	3.78	14856	1764	12	0	0	1086	0	logfile
✔	6V3G	21036	2022-07-06	2019-11-25	4.0	4.39	—	4.1	0.008	1.05	0.0	0.07	10.57	0.01	2.211	13.54	2.66	5.6	94.4	0.0	-2.76	0.72	0.77	—	4.1	0.003	0.74	0.0	0.04	12.79	0.00	2.151	15.13	0.38	3.7	96.3	0.0	-0.51	0.89	0.73	0.83	—	28520	3580	4	0	0	0	0	logfile
✘	6Ni3	9376	2022-07-04	2018-12-26	3.8	4.22	—	4.0	0.010	1.21	0.0	0.07	10.58	0.01	1.201	4.73	0.23	5.3	94.7	0.0	-2.86	0.75	0.76	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1043	6	0	1	0	0	logfile
✔	6MDR	9104	2022-07-06	2018-09-05	3.47	3.55	—	3.5	0.007	0.93	0.0	0.06	9.55	0.01	2.349	3.64	0.00	6.6	93.4	0.0	-3.18	0.74	0.84	4.46	3.5	0.004	0.66	0.0	0.05	14.92	0.01	2.242	7.98	0.19	6.2	93.8	0.0	-1.11	1.27	0.74	0.86	3.17	29456	3696	16	0	0	0	0	logfile
✘	6JND	9848	2022-07-03	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	4.09	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3294	419	1	0	1	0	0	logfile
✔	6JNC	9847	2022-07-03	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.48	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.003	0.58	0.0	0.05	15.72	0.00	2.278	6.21	0.59	3.1	96.9	0.0	-1.13	1.79	0.52	0.88	2.22	3294	419	1	0	1	0	0	logfile
✘	6HiN	0225	2022-07-04	2018-08-30	4.1	4.24	—	4.2	0.009	1.15	0.0	0.07	11.82	0.01	1.347	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	10	0	30	0	0	logfile
✔	6U7H	20668	2022-07-05	2019-09-02	3.1	3.91	3.18	3.6	0.012	1.77	33.0	0.11	13.25	0.01	2.282	0.30	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.003	0.60	0.0	0.04	13.58	0.00	2.284	6.67	0.12	3.5	96.5	0.0	0.38	1.22	0.84	0.83	3.16	23394	2895	6	0	81	0	0	logfile
✔	5WJT	8847	2022-07-06	2017-07-24	3.8	3.65	—	3.6	0.010	1.19	0.0	0.05	11.04	0.01	1.626	13.14	0.41	10.7	89.3	0.0	-4.67	0.57	0.78	1.92	3.6	0.003	0.78	0.0	0.04	16.25	0.00	2.129	16.25	0.40	9.2	90.5	0.3	1.42	4.10	0.58	0.81	1.00	92947	12382	41	0	0	0	0	logfile
✔	5oDV	3785	2022-07-05	2017-07-06	4.0	4.43	4.14	4.4	0.008	0.80	0.0	0.05	10.27	0.01	1.941	6.34	0.00	13.2	86.8	0.0	-4.48	0.50	0.73	—	4.4	0.004	0.66	0.0	0.04	16.21	0.00	1.924	9.85	0.69	8.6	91.4	0.0	-2.22	1.14	0.53	0.82	—	82656	4968	48	120	0	0	40368	logfile
✔	6VQW	21359	2022-07-04	2020-02-06	3.42	4.18	—	4.0	0.010	0.94	0.0	0.06	15.46	0.01	2.245	8.00	0.57	13.1	86.9	0.0	-5.04	0.78	0.79	1.92	4.0	0.003	0.61	0.0	0.04	16.15	0.00	2.126	13.09	0.26	8.6	91.4	0.0	-2.16	0.46	0.79	0.80	1.32	20479	2648	11	40	0	0	0	logfile
✔	3JAE	6345	2022-07-03	2015-06-08	3.9	2.88	—	3.5	0.006	1.25	0.0	0.05	9.25	0.01	2.202	13.89	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.85	0.0	0.04	13.60	0.00	2.000	16.30	0.08	2.9	97.1	0.0	0.14	1.48	0.72	0.82	1.52	12825	1690	10	0	10	0	0	logfile
✔	6B44	7048	2022-07-05	2017-09-25	2.9	3.00	—	3.0	0.006	0.99	0.0	0.06	14.77	0.01	2.237	5.60	0.43	11.4	88.6	0.0	-4.46	0.65	0.77	3.33	3.0	0.004	0.67	0.0	0.04	17.23	0.00	2.122	10.68	2.54	9.2	90.8	0.0	-1.84	0.99	0.65	0.79	2.64	22681	2879	12	114	0	0	0	logfile
✔	6B46	7050	2022-07-04	2017-09-25	3.1	3.16	—	3.1	0.006	0.87	0.0	0.05	12.04	0.01	2.296	4.30	0.18	8.5	91.5	0.0	-3.95	0.69	0.82	3.45	3.1	0.011	1.03	2.0	0.04	15.13	0.01	2.117	10.70	0.06	8.7	91.3	0.0	-1.51	0.54	0.71	0.84	2.85	18344	2308	10	60	0	0	0	logfile

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