Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A8V	15241	2023-04-28	2022-06-24	3.34	3.62	3.37	3.7	0.004	0.79	0.0	0.05	15.57	0.01	2.208	8.03	0.11	3.5	96.5	0.0	-0.58	0.75	0.79	1.81	3.7	0.003	0.62	0.0	0.04	16.86	0.00	2.175	11.46	0.35	3.2	96.8	0.0	0.71	0.42	0.76	0.83	1.53	27164	3396	13	0	33	0	0	logfile
✔	6Z1U	11040	2023-04-23	2020-05-14	3.47	3.57	3.25	3.5	0.008	0.74	0.0	0.05	14.81	0.00	1.905	11.83	0.00	8.9	91.1	0.0	-1.62	0.68	0.83	2.33	3.5	0.006	0.58	0.0	0.04	15.72	0.00	1.662	9.48	0.06	6.5	93.5	0.0	-0.44	0.37	0.68	0.85	2.15	65073	4239	32	0	11	17	32803	logfile
✔	6o85	0651	2023-04-28	2019-03-08	3.03	3.40	—	3.4	0.005	0.87	0.0	0.15	12.43	0.01	2.239	3.91	0.89	4.6	95.4	0.0	-3.78	0.67	0.65	0.33	3.3	0.004	0.68	0.0	0.05	14.66	0.00	2.183	9.67	0.46	4.5	95.5	0.0	0.03	1.05	0.77	0.87	2.75	28576	4100	14	0	15	0	0	logfile
✔	6oEE	20020	2023-04-28	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	6HJN	0234	2023-04-22	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	12.09	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.003	0.68	0.0	0.04	14.00	0.00	2.096	6.24	0.16	8.3	91.7	0.0	-0.32	0.55	0.89	0.89	3.27	12309	1488	24	0	48	0	0	logfile
✔	7TPK	26058	2023-04-19	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	7THK	25896	2023-04-26	2022-01-11	3.11	3.36	3.15	3.4	0.009	1.34	13.0	0.08	13.27	0.01	2.312	1.77	0.44	4.4	95.6	0.0	-1.63	0.71	0.78	2.87	3.4	0.003	0.58	0.0	0.04	15.01	0.00	2.155	7.44	0.36	3.1	96.9	0.0	0.35	1.01	0.73	0.87	3.12	23191	2925	6	0	38	0	0	logfile
✔	7KKK	22907	2023-04-19	2020-10-27	3.03	3.38	3.82	3.3	0.021	1.74	3.0	0.12	10.44	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.002	0.57	0.0	0.04	14.50	0.00	1.873	4.96	0.28	1.9	98.1	0.0	0.57	1.49	0.62	0.84	3.19	52320	3360	21	0	54	0	25449	logfile
✔	6oDJ	20021	2023-04-27	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6XS6	22301	2023-04-24	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7PEA	13350	2023-04-21	2021-08-09	4.07	4.50	—	4.2	0.002	0.47	0.0	0.04	14.27	0.00	2.239	3.98	4.24	4.7	95.3	0.0	-2.53	0.84	0.72	—	4.2	0.003	0.64	0.0	0.04	13.32	0.00	2.113	10.69	0.02	3.1	96.8	0.0	0.90	1.47	0.86	0.76	—	58252	7222	10	0	114	0	0	logfile
✔	6W1N	21513	2023-04-19	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.50	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.76	0.0	0.04	14.15	0.00	2.112	11.82	0.29	2.8	97.2	0.0	0.86	0.75	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	6ZiK	11227	2023-04-20	2020-06-26	3.66	3.14	3.54	3.4	0.005	0.73	0.0	0.04	14.23	0.00	2.134	10.04	0.00	2.0	98.0	0.0	1.08	0.55	0.78	2.12	3.4	0.003	0.59	0.0	0.04	16.45	0.00	2.197	9.40	0.13	1.4	98.6	0.0	1.92	0.44	0.56	0.78	1.39	7735	1048	11	0	0	0	0	logfile
✔	7URT	26718	2023-04-20	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	14.02	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.036	3.37	11.0	0.30	17.01	0.01	0.291	9.27	1.09	1.7	98.2	0.1	1.92	1.13	0.69	0.81	2.58	107880	13260	60	0	120	0	0	logfile
✔	6KNF	0730	2023-04-20	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.005	0.58	0.0	0.05	15.52	0.00	2.017	7.00	5.51	1.7	98.3	0.0	-0.70	0.93	0.83	0.92	4.37	7749	1002	6	0	6	0	0	logfile
✔	8E2F	27834	2023-04-22	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.57	0.0	0.04	16.59	0.00	1.823	6.66	1.73	2.7	97.3	0.0	1.68	0.37	0.61	0.84	3.95	12305	771	1	0	0	0	6207	logfile
✔	7WS2	32741	2023-04-20	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.66	0.0	0.04	15.21	0.00	2.132	8.44	0.55	6.8	93.2	0.0	-1.79	0.46	0.69	0.82	3.35	3343	431	3	0	0	0	0	logfile
✔	6Z1R	11039	2023-04-23	2020-05-14	3.29	3.42	3.09	3.3	0.007	0.71	0.0	0.04	15.07	0.00	1.890	9.22	0.00	6.6	93.4	0.0	-1.25	0.69	0.83	2.88	3.3	0.005	0.57	0.0	0.04	16.00	0.00	1.691	7.88	0.09	5.2	94.8	0.0	0.03	1.54	0.70	0.86	2.49	65754	4278	32	0	11	17	33137	logfile
✔	6X6K	22076	2023-04-21	2020-05-28	3.1	3.22	—	3.2	0.011	1.23	2.0	0.07	13.77	0.01	2.210	8.21	0.00	5.5	94.5	0.0	-1.94	0.69	0.84	2.88	3.2	0.004	0.69	0.0	0.05	16.58	0.00	2.126	16.02	0.31	5.4	94.6	0.0	-0.16	0.63	0.70	0.85	2.39	60970	7602	42	0	0	0	0	logfile
✔	7T9i	25758	2023-04-26	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile

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