Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FDG	31542	2023-02-17	2021-07-16	3.69	4.43	—	4.3	0.006	0.84	0.0	0.05	15.77	0.01	2.061	23.54	0.29	7.4	92.6	0.0	-3.38	0.59	0.78	1.13	4.3	0.003	0.85	0.0	0.05	17.56	0.00	2.170	18.29	0.29	5.1	94.9	0.0	-0.55	0.82	0.58	0.75	1.07	6459	791	4	0	5	0	0	logfile
✔	7DCP	30638	2023-02-17	2020-10-26	3.15	2.93	—	2.9	0.005	0.92	0.0	0.05	11.27	0.01	2.092	3.96	0.61	2.9	97.1	0.0	-2.88	0.70	0.82	3.52	2.9	0.004	0.65	0.0	0.04	15.24	0.00	2.114	6.91	0.46	4.3	95.7	0.0	1.12	0.94	0.72	0.86	2.66	5868	732	3	0	2	0	0	logfile
✔	7R5R	14334	2023-02-20	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	27.14	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.014	0.90	0.0	0.04	28.54	0.01	2.131	5.12	1.71	3.6	96.4	0.0	1.78	0.94	0.81	0.87	3.25	11625	779	12	266	0	0	0	logfile
✔	6WEL	21651	2023-02-22	2020-04-02	2.5	2.95	—	2.9	0.011	1.09	0.0	0.06	16.50	0.01	2.111	8.33	3.02	3.9	96.1	0.0	-2.07	0.54	0.76	3.96	2.9	0.002	0.50	0.0	0.04	16.55	0.00	2.198	7.77	1.67	4.4	95.6	0.0	1.11	0.50	0.60	0.80	3.58	17725	2052	8	0	37	0	0	logfile
✔	7oUH	13077	2023-02-21	2021-06-11	3.5	2.47	3.44	2.1	0.014	0.74	0.0	0.04	17.29	0.01	1.666	7.47	0.00	1.6	98.4	0.0	0.40	0.76	0.71	2.22	2.0	0.003	0.74	0.0	0.04	19.59	0.00	1.928	13.31	0.82	2.7	97.3	0.0	-0.22	0.68	0.75	0.75	2.17	15088	1664	18	80	10	6	0	logfile
✔	7KTQ	23026	2023-02-20	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.33	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.55	0.0	0.03	29.41	0.00	2.071	5.72	0.64	2.3	97.7	0.0	3.03	1.42	0.78	0.88	2.44	12745	752	10	331	0	0	0	logfile
✔	7QUD	14148	2023-02-18	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.003	0.62	0.0	0.04	18.39	0.01	1.947	12.76	0.56	2.8	97.2	0.0	-0.19	0.45	0.67	0.78	1.86	6696	844	4	0	3	0	0	logfile
✘	6WEK	21650	2023-02-22	2020-04-02	2.7	3.19	—	3.1	0.019	1.56	24.0	0.08	15.78	0.01	1.988	10.13	4.95	4.8	95.2	0.0	-1.65	0.63	0.81	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17616	2048	8	0	32	0	0	logfile
✔	6C14	7328	2023-02-19	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.003	0.82	0.0	0.05	12.10	0.00	2.148	17.50	0.27	4.4	95.6	0.0	-1.74	1.91	0.57	0.71	—	6746	860	4	0	0	0	0	logfile
✔	7oUF	13075	2023-02-21	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.56	0.0	0.04	17.36	0.00	1.686	6.18	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.84	0.01	1.946	10.11	1.99	2.3	97.7	0.0	0.00	1.74	0.79	0.80	2.77	15094	1664	16	80	10	12	0	logfile
✔	7ZFW	14704	2023-02-20	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7SVR	25452	2023-02-18	2021-11-19	3.9	4.11	—	4.1	0.004	0.80	0.0	0.05	14.31	0.00	2.213	6.79	0.00	4.3	95.7	0.0	-2.10	0.63	0.74	1.24	4.0	0.004	0.68	0.0	0.04	16.79	0.00	2.243	8.51	0.68	7.1	92.9	0.0	0.26	0.49	0.65	0.76	0.97	7841	1134	3	0	20	0	0	logfile
✔	7VAM	31850	2023-02-27	2021-08-30	3.2	2.83	3.11	3.0	0.003	0.61	0.0	0.05	13.32	0.00	1.634	3.79	0.00	1.4	98.6	0.0	1.25	0.60	0.80	3.25	3.0	0.004	0.58	0.0	0.04	16.06	0.00	1.906	5.54	0.19	2.5	97.5	0.0	0.45	1.37	0.70	0.88	3.02	29558	3788	15	0	6	0	0	logfile
✔	7M6R	23705	2023-02-21	2021-03-26	3.57	3.53	3.53	3.8	0.008	1.20	0.0	0.08	12.27	0.01	2.333	4.44	0.64	3.5	96.5	0.0	-0.05	0.81	0.80	2.23	3.8	0.004	0.86	0.0	0.05	15.55	0.00	2.148	14.41	0.38	4.9	95.1	0.0	0.06	1.44	0.82	0.81	1.98	14300	1755	10	0	5	0	0	logfile
✔	7TCG	25811	2023-02-18	2021-12-23	3.8	3.89	3.84	3.9	0.004	1.15	0.0	0.04	15.72	0.00	2.138	5.54	0.00	7.9	92.1	0.0	-0.53	0.67	0.81	1.03	3.9	0.002	0.66	0.0	0.04	17.01	0.00	2.132	6.43	0.31	7.1	92.9	0.0	-0.18	0.93	0.67	0.82	0.85	8891	1123	4	0	1	0	0	logfile
✘	7KSR	23024	2023-02-20	2020-11-24	4.1	4.28	—	4.2	0.004	0.70	0.0	0.05	11.74	0.00	2.200	1.91	0.00	5.5	94.5	0.0	-4.46	0.65	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11863	1524	5	0	7	0	0	logfile
✔	6oXL	20220	2023-02-21	2019-05-13	3.5	3.82	3.60	3.7	0.010	1.09	0.0	0.06	9.34	0.01	2.236	6.62	0.06	5.6	94.4	0.0	-5.46	0.81	0.84	3.05	3.7	0.003	0.62	0.0	0.04	13.38	0.00	2.151	8.86	0.00	3.5	96.4	0.1	-0.29	1.35	0.80	0.81	1.74	14413	1808	6	0	7	0	0	logfile
✔	6o1V	0606	2023-02-19	2019-02-21	3.2	3.50	—	3.6	0.014	1.79	0.0	0.08	13.45	0.01	1.933	6.31	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.62	0.0	0.04	16.20	0.00	1.957	6.82	0.29	2.1	97.9	0.0	0.71	1.27	0.59	0.83	2.57	9711	1179	3	0	28	0	0	logfile
✔	6CRQ	7568	2023-02-23	2018-03-19	4.2	3.69	4.20	4.1	0.014	1.44	1.0	0.08	11.39	0.01	1.839	7.27	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	3.6	0.007	0.86	0.0	0.05	13.70	0.01	2.091	14.63	0.00	7.3	92.7	0.0	-0.72	1.45	0.68	0.78	—	20271	2391	54	0	105	0	0	logfile
✔	8D1V	27138	2023-02-19	2022-05-27	2.82	2.27	2.69	2.7	0.006	0.74	0.0	0.04	15.50	0.00	2.059	25.76	0.00	5.2	94.8	0.0	-0.54	0.62	0.78	3.45	2.4	0.007	0.76	0.0	0.05	17.86	0.01	1.909	36.51	3.21	8.1	91.7	0.2	-0.65	1.28	0.63	0.79	3.82	10982	1229	4	52	4	0	9	logfile

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