Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MJP	23881	2023-11-16	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	6.51	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.60	0.0	0.05	4.85	0.00	2.276	0.87	0.00	6.8	93.2	0.0	-0.45	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	7JZ6	22530	2023-11-17	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.003	0.62	0.0	0.04	19.08	0.00	2.177	5.78	5.84	2.8	97.2	0.0	0.25	1.59	0.57	0.66	2.47	20842	2646	12	0	4	18	0	logfile
✔	7S8C	24893	2023-11-17	2021-09-17	2.85	2.35	—	2.5	0.010	1.19	0.0	0.06	14.03	0.01	2.221	6.51	0.75	3.0	97.0	0.0	-4.72	0.76	0.82	4.13	2.5	0.003	0.66	0.0	0.04	16.82	0.00	2.212	10.68	2.45	2.3	97.7	0.0	1.08	0.66	0.77	0.83	2.48	20562	2448	8	0	34	0	0	logfile
✔	8DBD	27280	2023-11-20	2022-06-14	3.2	3.20	3.28	3.2	0.007	0.77	0.0	0.06	15.09	0.00	2.119	5.93	2.74	3.3	96.7	0.0	0.45	0.65	0.77	3.28	3.2	0.005	0.57	0.0	0.05	16.21	0.00	2.097	8.44	0.19	4.4	95.6	0.0	0.55	1.29	0.65	0.85	2.96	28464	3708	24	0	24	0	0	logfile
✔	6KS8	0760	2023-11-15	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✘	7Z2G	14465	2023-11-14	2022-02-26	3.65	3.52	3.63	3.6	0.007	0.73	1.0	0.05	17.04	0.02	2.324	8.07	0.24	3.9	96.1	0.0	-0.62	0.63	0.76	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8406	943	4	36	1	0	0	logfile
✔	6J0F	9763	2023-11-17	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	5.30	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.003	0.74	0.0	0.04	16.95	0.00	2.155	10.73	0.55	5.9	94.1	0.0	-1.05	1.71	0.64	0.85	2.00	19314	2472	12	0	0	0	0	logfile
✔	6NP0	0469	2023-11-16	2019-01-17	2.92	3.16	3.01	3.1	0.011	1.29	0.0	0.08	10.43	0.01	2.270	3.63	0.55	5.2	94.8	0.0	-3.90	0.69	0.72	2.76	3.1	0.003	0.65	0.0	0.04	14.69	0.00	2.224	5.64	3.29	2.7	97.3	0.0	0.36	0.84	0.79	0.85	2.73	16891	1975	20	0	41	0	0	logfile
✔	7RUA	24701	2023-11-15	2021-08-16	3.4	3.27	3.30	3.3	0.003	0.57	0.0	0.04	14.35	0.01	1.920	7.52	0.00	2.2	97.8	0.0	1.77	0.65	0.76	2.85	3.3	0.004	0.59	0.0	0.04	16.66	0.00	2.076	10.29	0.16	2.0	98.0	0.0	1.60	1.00	0.75	0.85	2.77	11603	1448	10	0	5	0	0	logfile
✔	7P15	13156	2023-11-14	2021-07-01	3.58	3.46	3.56	3.5	0.007	0.93	2.0	0.07	16.34	0.02	2.182	8.93	0.23	4.0	96.0	0.0	-1.15	0.62	0.71	2.09	3.5	0.005	0.80	0.0	0.05	18.20	0.01	2.105	13.79	0.82	6.6	93.4	0.0	-0.90	0.42	0.63	0.72	2.22	8587	969	3	34	1	0	0	logfile
✔	7PEY	13361	2023-11-16	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.67	0.0	0.04	29.79	0.00	2.141	19.90	0.00	3.2	96.8	0.0	1.20	1.30	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	7oCE	12805	2023-11-17	2021-04-26	3.1	2.79	—	3.0	0.009	1.07	0.0	0.04	14.57	0.00	2.080	4.48	0.00	3.8	96.2	0.0	1.07	0.69	0.79	3.20	3.0	0.003	0.51	0.0	0.04	14.86	0.00	2.175	5.01	0.25	2.6	97.4	0.0	1.89	0.43	0.69	0.84	2.62	18092	2322	16	0	52	0	0	logfile
✔	7AWA	11928	2023-11-13	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	6V6B	21067	2023-11-14	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	3.9	0.003	0.61	0.0	0.04	16.91	0.00	2.139	6.54	0.20	3.4	96.6	0.1	-0.41	0.59	0.53	0.83	0.72	9115	1111	2	0	0	0	0	logfile
✔	7MR2	23954	2023-11-16	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.77	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.58	0.0	0.04	14.99	0.00	2.164	10.37	0.06	4.5	95.5	0.0	-0.01	1.16	0.90	0.85	—	16671	2075	3	0	0	0	0	logfile
✔	7oZW	13139	2023-11-14	2021-06-28	3.38	3.17	3.40	3.4	0.007	0.83	0.0	0.05	16.91	0.02	2.276	7.68	0.00	3.7	96.3	0.0	-0.27	0.62	0.70	2.53	3.4	0.004	0.77	0.0	0.04	18.71	0.01	2.178	10.48	0.25	4.5	95.5	0.0	-0.19	0.42	0.62	0.73	2.24	8407	961	4	34	1	0	0	logfile
✔	7P1G	13158	2023-11-20	2021-07-01	3.2	3.39	—	3.3	0.022	1.36	10.0	0.08	15.07	0.01	1.310	9.08	0.17	6.0	94.0	0.0	-2.89	0.65	0.80	3.22	3.3	0.004	0.70	0.0	0.04	16.16	0.00	1.946	11.33	0.27	3.3	96.7	0.0	0.16	1.77	0.64	0.83	2.24	28580	3620	25	5	25	0	0	logfile
✔	6PLY	20380	2023-11-16	2019-07-01	2.9	3.56	—	3.4	0.007	1.03	0.0	0.06	9.40	0.01	2.330	5.09	0.00	5.1	94.9	0.0	-5.21	0.51	0.79	3.82	3.4	0.003	0.72	0.0	0.05	15.67	0.00	2.185	10.11	2.61	4.7	95.2	0.1	-1.78	1.35	0.50	0.78	3.17	14165	1730	14	0	20	0	0	logfile
✔	6PLX	20379	2023-11-16	2019-07-01	2.9	3.61	—	3.5	0.011	1.13	0.0	0.06	10.15	0.01	2.316	6.04	0.00	3.2	96.8	0.0	-5.10	0.56	0.83	4.25	3.5	0.003	0.67	0.0	0.04	15.25	0.00	2.166	9.41	1.87	3.4	96.6	0.0	-1.02	1.35	0.51	0.79	3.42	14240	1730	15	0	20	0	0	logfile
✔	7LD3	23280	2023-11-14	2021-01-12	3.2	3.49	3.04	3.5	0.006	1.02	0.0	0.06	12.70	0.01	2.277	3.63	0.13	3.3	96.7	0.0	-1.50	0.59	0.82	3.41	3.4	0.003	0.56	0.0	0.04	14.47	0.00	2.172	8.61	0.00	2.2	97.8	0.0	0.57	1.26	0.68	0.87	2.78	7016	888	5	0	2	1	0	logfile

• Page 1 of 528
• next →