Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M62	23687	2022-04-04	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	7M65	23689	2022-04-04	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	7M64	23688	2022-04-04	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7oSL	13054	2022-04-09	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.53	0.0	0.04	14.71	0.00	2.203	2.82	0.07	2.1	97.9	0.0	1.19	0.75	0.73	0.78	1.81	47885	2935	9	0	0	0	24225	logfile
✔	7M61	23686	2022-04-04	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	20.78	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	7RLA	24523	2022-04-08	2021-07-23	3.1	3.89	—	3.4	0.003	0.78	0.0	0.05	13.59	0.00	2.035	10.00	0.03	7.5	92.5	0.0	-1.72	0.79	0.79	1.20	3.4	0.004	0.64	0.0	0.04	15.16	0.00	1.866	10.12	0.16	6.0	94.0	0.0	-0.14	1.69	0.81	0.84	1.37	34944	4422	12	0	24	0	0	logfile
✔	7RTV	24690	2022-04-04	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	6YT5	10912	2022-04-09	2020-04-23	3.0	2.67	—	3.3	0.010	0.73	0.0	0.05	15.51	0.00	2.196	13.76	0.15	8.0	92.0	0.0	-4.28	0.85	0.81	2.08	3.3	0.004	0.76	0.0	0.04	17.73	0.01	2.144	11.76	1.90	3.6	96.4	0.0	0.71	0.54	0.83	0.81	1.27	39078	5040	12	0	0	0	0	logfile
✔	7PEA	13350	2022-04-04	2021-08-09	4.07	4.50	—	4.2	0.002	0.47	0.0	0.04	14.27	0.00	2.239	3.97	4.24	4.7	95.3	0.0	-2.53	0.84	0.72	—	4.2	0.003	0.65	0.0	0.04	13.42	0.00	2.142	11.58	0.00	3.4	96.6	0.0	0.63	1.51	0.86	0.77	—	58252	7222	10	0	114	0	0	logfile
✔	7MKi	23895	2022-04-08	2021-04-23	3.5	3.43	3.54	3.5	0.019	0.77	0.0	0.06	16.91	0.00	2.170	6.42	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.004	0.66	0.0	0.04	17.13	0.01	1.957	9.23	0.10	6.2	93.8	0.0	-1.40	0.22	0.69	0.79	1.89	30919	3676	10	96	6	0	0	logfile
✔	7S67	24852	2022-04-06	2021-09-13	3.8	3.64	3.80	3.9	0.013	1.39	0.0	0.07	11.90	0.01	1.815	5.58	0.00	1.5	98.5	0.0	0.25	0.70	0.73	2.10	3.8	0.005	0.77	0.0	0.05	16.35	0.01	1.910	13.76	0.66	2.4	97.6	0.0	0.06	2.75	0.71	0.80	1.69	23058	2892	12	0	24	0	0	logfile
✔	7S66	24851	2022-04-06	2021-09-13	2.8	3.06	2.88	3.1	0.013	1.34	0.0	0.06	10.54	0.01	1.770	2.28	0.00	1.4	98.6	0.0	0.50	0.75	0.83	3.82	3.0	0.003	0.54	0.0	0.04	16.32	0.00	1.869	5.01	2.04	1.6	98.4	0.0	0.85	1.36	0.73	0.85	3.48	23242	2910	12	0	24	0	0	logfile
✔	7S65	24850	2022-04-06	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	11.66	0.01	1.385	8.25	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.2	0.007	0.68	0.0	0.04	15.87	0.01	1.819	9.43	0.17	2.4	97.6	0.0	0.47	0.69	0.65	0.79	3.23	22049	2760	12	0	24	0	0	logfile
✔	7N6Q	24208	2022-04-05	2021-06-08	3.87	3.99	—	4.0	0.014	1.80	0.0	0.08	16.00	0.00	2.223	7.63	1.55	7.5	92.5	0.0	-4.50	0.51	0.68	2.01	4.0	0.003	0.73	0.0	0.05	17.54	0.00	2.201	9.97	0.31	5.5	94.5	0.0	0.01	2.52	0.66	0.81	1.47	12752	1500	8	0	16	0	0	logfile
✘	7oY8	13110	2022-04-06	2021-06-23	2.5	2.51	—	2.6	0.008	0.91	0.0	0.05	15.06	0.01	1.197	0.65	0.21	2.4	97.6	0.0	0.49	0.72	0.78	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22902	2293	103	0	68	372	0	logfile
✔	7BCQ	12142	2022-04-06	2020-12-21	3.43	3.61	3.36	3.8	0.013	1.05	0.0	0.15	13.48	0.01	2.098	3.22	0.00	5.5	94.5	0.0	-0.68	0.58	0.73	2.69	3.8	0.003	0.68	0.0	0.15	14.22	0.00	2.023	7.79	0.00	5.0	95.0	0.0	0.94	0.49	0.59	0.77	2.46	20160	1326	6	0	3	0	10299	logfile
✔	7BCT	12143	2022-04-06	2020-12-21	3.37	3.33	3.31	3.4	0.009	1.15	0.0	0.15	13.35	0.01	2.299	4.43	0.00	5.7	94.3	0.0	-0.74	0.51	0.67	2.81	3.4	0.004	0.79	0.0	0.17	14.90	0.00	2.003	10.40	0.58	5.9	94.1	0.0	1.14	0.79	0.56	0.73	2.59	20091	1326	3	0	0	0	10299	logfile
✔	7K8D	22728	2022-04-05	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7JZY	22584	2022-04-07	2020-09-02	3.6	3.61	—	3.6	0.009	0.96	0.0	0.05	16.34	0.01	2.236	5.56	0.85	7.0	93.0	0.0	-3.78	0.81	0.85	2.54	3.5	0.006	0.89	1.0	0.04	17.32	0.00	1.653	12.31	0.09	5.9	94.1	0.0	-0.96	0.49	0.81	0.84	2.12	24539	3024	12	61	0	0	0	logfile
✔	7K9J	22750	2022-04-07	2020-09-29	3.0	3.59	3.08	3.5	0.004	0.74	1.0	0.05	14.42	0.01	2.084	8.81	0.57	3.8	96.2	0.0	-0.88	0.73	0.78	2.65	3.5	0.004	0.65	0.0	0.05	16.07	0.01	2.069	8.67	1.14	4.5	95.5	0.0	-0.48	0.44	0.73	0.80	2.31	29766	3627	54	0	111	0	0	logfile

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