Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B5C	12025	2023-08-12	2020-12-03	3.7	3.81	3.61	3.8	0.005	0.86	0.0	0.05	15.21	0.01	2.239	7.43	0.78	5.9	94.1	0.0	-3.64	0.62	0.77	1.51	3.8	0.004	0.72	0.0	0.04	16.46	0.01	2.097	11.63	0.55	6.2	93.8	0.0	-0.41	0.66	0.62	0.77	1.34	11770	1436	4	0	4	0	0	logfile
✔	7WLJ	32585	2023-08-11	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	14.59	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.003	0.88	0.0	0.05	16.21	0.00	2.150	16.14	0.20	6.6	93.4	0.0	-0.06	0.67	0.60	0.80	0.94	9450	1135	1	0	15	0	0	logfile
✔	7VFX	31962	2023-08-11	2021-09-14	2.8	2.73	2.85	2.9	0.003	0.65	0.0	0.05	13.95	0.00	2.225	5.38	0.00	3.1	96.9	0.0	0.41	0.70	0.87	3.94	2.9	0.002	0.55	0.0	0.04	16.05	0.00	2.136	4.82	0.72	2.9	97.1	0.0	1.09	1.24	0.71	0.89	3.74	9004	1139	7	0	4	0	0	logfile
✔	7S1X	24807	2023-08-12	2021-09-02	2.9	3.15	—	3.3	0.005	0.83	2.0	0.05	12.05	0.01	2.052	18.39	0.17	9.9	90.1	0.0	-0.65	0.51	0.72	3.89	3.2	0.003	0.64	2.0	0.04	15.22	0.00	2.090	10.45	3.55	8.2	91.8	0.0	0.13	0.52	0.61	0.81	3.52	12658	1742	4	0	6	0	0	logfile
✔	7T2H	25613	2023-08-10	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.52	0.0	0.15	14.12	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	3.4	0.004	0.71	0.0	0.09	15.51	0.00	2.167	10.26	0.43	2.7	97.3	0.0	-0.64	0.42	0.60	0.79	2.44	8677	1119	5	0	1	0	0	logfile
✔	7Ji0	22341	2023-08-09	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	6V11	21009	2023-08-17	2019-11-19	3.8	4.18	3.97	4.1	0.008	1.07	0.0	0.06	11.18	0.01	2.243	6.55	0.90	8.1	91.9	0.0	-4.51	0.79	0.81	1.63	4.1	0.003	0.73	0.0	0.04	14.42	0.00	2.134	11.45	0.33	5.1	94.9	0.0	-0.85	2.18	0.80	0.82	1.07	22626	2915	11	0	5	0	0	logfile
✔	8EJC	28177	2023-08-10	2022-09-16	3.0	3.01	3.04	3.1	0.006	0.64	0.0	0.04	13.25	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.2	0.004	0.63	0.0	0.04	16.03	0.00	2.174	9.36	1.66	3.7	96.3	0.0	1.07	0.36	0.69	0.85	2.25	8659	1132	5	0	1	0	0	logfile
✔	7SP7	25367	2023-08-10	2021-11-02	3.1	3.61	—	3.5	0.008	0.68	0.0	0.05	13.90	0.00	2.219	3.57	0.00	1.4	98.6	0.0	2.52	0.60	0.73	1.83	3.5	0.003	0.52	0.0	0.04	15.63	0.00	2.219	5.74	0.32	1.9	98.1	0.0	1.72	0.58	0.67	0.81	3.22	6052	739	4	1	4	0	0	logfile
✔	6YN5	10849	2023-08-10	2020-04-10	2.7	2.87	2.79	2.8	0.008	0.84	0.0	0.05	11.70	0.01	2.247	3.71	0.03	1.9	98.1	0.0	-0.33	0.84	0.88	4.96	2.8	0.005	0.56	0.0	0.04	13.61	0.00	2.157	6.22	0.90	1.6	98.4	0.0	0.74	1.24	0.85	0.90	4.40	56994	7110	10	0	0	0	0	logfile
✘	7WF7	32461	2023-08-10	2021-12-26	3.4	3.19	—	3.2	0.004	0.83	0.0	0.05	13.56	0.00	2.288	2.88	0.00	4.4	95.6	0.0	-1.14	0.55	0.64	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1034	6	0	1	0	0	logfile
✔	6SoF	10273	2023-08-21	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	8GSZ	34244	2023-08-09	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	7FiY	31606	2023-08-11	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.14	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.58	0.0	0.04	14.14	0.00	2.105	9.47	0.31	2.5	97.5	0.0	1.25	1.71	0.70	0.80	2.00	9367	1152	7	0	6	0	0	logfile
✔	7EW4	31347	2023-08-11	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.43	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.002	0.52	0.0	0.04	15.13	0.00	2.101	8.96	0.62	2.8	97.2	0.0	0.62	0.39	0.70	0.81	2.46	8929	1145	6	0	3	0	0	logfile
✔	6X96	22102	2023-08-15	2020-06-02	3.4	4.14	3.71	4.0	0.022	1.74	0.0	0.13	10.21	0.01	2.363	0.64	0.00	2.1	97.9	0.0	1.05	0.77	0.80	3.02	4.0	0.004	0.80	0.0	0.05	14.89	0.00	2.196	10.96	0.55	3.9	96.0	0.1	0.05	2.47	0.66	0.72	2.29	18915	2322	27	0	63	0	0	logfile
✔	7Y9T	33691	2023-08-10	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.67	0.0	0.04	13.62	0.00	2.220	5.37	0.36	4.5	95.5	0.0	-1.47	0.59	0.67	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	7EW2	31345	2023-08-11	2021-05-24	3.1	3.30	—	3.4	0.003	0.77	0.0	0.05	14.09	0.00	2.201	10.55	0.61	1.7	98.3	0.0	-0.25	0.60	0.68	1.56	3.4	0.003	0.55	0.0	0.04	16.07	0.00	2.187	8.87	0.41	3.9	96.1	0.0	0.20	0.42	0.60	0.74	1.57	9001	1149	5	0	1	0	0	logfile
✔	7KTV	23031	2023-08-10	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.77	0.0	0.04	13.13	0.00	2.155	19.49	0.12	3.8	96.2	0.0	-0.43	0.90	0.79	0.76	—	7577	995	1	0	0	0	0	logfile
✔	8ET1	28583	2023-08-23	2022-10-15	4.48	5.31	5.46	4.9	0.003	0.82	0.0	0.05	15.01	0.00	2.180	29.82	0.00	11.5	88.5	0.0	-3.55	0.75	0.57	—	4.9	0.003	0.78	0.0	0.05	15.14	0.01	2.114	32.83	0.00	13.3	86.7	0.0	-3.55	0.71	0.76	0.61	—	35976	4368	24	0	0	0	0	logfile

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