Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6V4D	21040	2022-11-29	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.75	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3095	422	1	0	0	0	0	logfile
✔	6XDC	22136	2022-11-29	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.004	0.62	0.0	0.04	15.16	0.00	2.185	9.57	2.87	4.2	95.8	0.0	0.90	1.70	0.46	0.71	3.35	3150	386	2	0	0	0	0	logfile
✔	6Y97	10733	2022-11-29	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.16	0.00	2.048	14.34	0.00	6.7	93.3	0.0	0.68	0.90	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✔	6W4S	21539	2022-11-29	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.30	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4986	650	3	0	0	0	0	logfile
✘	6VU5	21387	2022-11-29	2020-02-14	3.5	3.59	3.38	3.5	0.007	0.99	0.0	0.06	15.26	0.01	2.230	8.48	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4657	576	2	0	27	0	0	logfile
✔	6RJU	4906	2022-11-29	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6ZS5	11388	2022-11-29	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✔	6SKi	10225	2022-11-29	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.59	0.0	0.04	16.68	0.00	2.245	7.39	1.51	2.7	97.3	0.0	0.77	0.50	0.62	0.83	4.32	4434	569	2	0	0	0	0	logfile
✔	6UUR	20900	2022-11-29	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.7	0.007	0.96	0.0	0.05	16.19	0.00	2.098	14.49	1.20	11.1	88.9	0.0	-4.61	2.23	0.52	0.79	3.03	2770	400	10	0	0	0	0	logfile
✔	6Y5L	10701	2022-11-29	2020-02-25	3.6	3.66	2.91	3.6	0.003	0.69	0.0	0.05	14.52	0.01	2.161	6.30	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.04	0.0	0.05	18.54	0.01	2.257	20.21	0.00	3.9	96.1	0.0	-0.04	1.09	0.69	0.74	0.99	3855	477	9	0	3	0	0	logfile
✔	6X12	21986	2022-11-29	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.65	0.0	0.04	15.91	0.00	2.249	7.77	0.63	2.5	97.5	0.0	0.23	1.19	0.67	0.84	1.33	3059	407	1	0	1	0	0	logfile
✔	6YJ5	10816	2022-11-29	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.74	0.0	0.05	15.34	0.01	2.238	10.30	0.00	12.2	87.8	0.0	-2.13	0.81	0.51	0.73	3.37	2061	306	1	0	0	0	0	logfile
✔	7KNT	22962	2022-11-29	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile
✔	7JV2	22491	2022-11-29	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.005	0.81	0.0	0.04	14.94	0.00	2.223	15.46	0.44	6.9	93.1	0.0	-1.20	1.29	0.70	0.77	3.82	2151	282	3	0	0	0	0	logfile
✔	6ZQi	11364	2022-11-29	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	6.43	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5032	655	4	0	1	0	0	logfile
✔	6UWF	20922	2022-11-29	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.17	0.00	2.243	6.88	0.00	3.4	96.6	0.0	1.17	0.32	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	7K45	22660	2022-11-29	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.003	0.65	0.0	0.05	13.70	0.00	2.216	8.84	0.40	2.2	97.8	0.0	0.33	1.30	0.80	0.80	2.42	3038	419	4	0	2	0	0	logfile
✔	7LCK	23276	2022-11-29	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6ZRF	11380	2022-11-29	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.003	0.73	0.0	0.04	14.44	0.00	2.284	18.31	0.42	10.6	89.4	0.0	-5.84	0.52	0.69	0.81	3.45	2220	300	12	0	0	0	0	logfile
✔	7JZM	22533	2022-11-29	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	14.47	0.00	2.187	8.88	0.00	2.8	97.2	0.0	0.24	1.24	0.76	0.79	3.02	2033	258	3	0	3	0	0	logfile

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