Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LY9	30015	2022-12-13	2020-02-13	3.93	3.98	—	3.9	0.006	0.75	0.0	0.04	14.60	0.00	2.195	21.60	1.05	7.3	92.7	0.0	-3.45	0.74	0.82	1.13	3.9	0.004	0.84	0.0	0.05	16.77	0.00	2.069	20.01	0.97	4.7	95.3	0.0	0.40	1.29	0.73	0.81	0.83	13888	1894	16	0	0	0	0	logfile
✔	6RFD	4863	2022-12-13	2019-04-12	3.9	4.01	—	3.9	0.006	0.83	0.0	0.05	11.19	0.01	2.077	3.50	0.00	4.4	95.6	0.0	-4.54	0.86	0.87	3.34	3.9	0.003	0.69	0.0	0.04	15.16	0.00	1.948	11.98	0.26	3.7	96.3	0.0	-0.21	2.13	0.86	0.87	2.76	14407	1821	9	2	4	0	0	logfile
✔	6LMU	0920	2022-12-14	2019-12-26	3.4	3.65	3.35	3.7	0.010	1.16	0.0	0.06	16.07	0.01	2.320	5.34	1.50	10.7	89.3	0.0	-5.98	0.66	0.73	2.00	3.6	0.004	0.79	0.0	0.04	16.45	0.00	2.251	11.62	0.82	7.8	92.2	0.0	0.15	0.57	0.61	0.74	1.23	22429	2893	11	0	0	0	0	logfile
✔	6K42	9912	2022-12-12	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.20	0.01	2.288	4.73	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	4.0	0.003	0.74	0.0	0.04	13.47	0.00	2.074	12.72	0.21	4.5	95.5	0.0	-1.62	2.24	0.66	0.73	—	8816	1116	6	0	1	0	0	logfile
✔	6UWF	20922	2022-12-11	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.243	6.27	0.92	3.1	96.9	0.0	0.94	0.31	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	6Y5K	10700	2022-12-12	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.75	0.0	0.05	12.95	0.00	2.096	10.85	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.004	0.73	0.0	0.05	12.90	0.00	2.075	18.08	0.00	3.3	96.7	0.0	-0.02	1.00	0.87	0.79	—	10614	1335	9	0	6	0	0	logfile
✔	6Y9X	10740	2022-12-14	2020-03-10	4.4	4.70	4.26	4.4	0.012	1.07	3.0	0.11	13.05	0.01	1.344	12.15	0.45	2.0	98.0	0.0	-0.96	0.69	0.74	—	4.4	0.004	0.83	0.0	0.05	13.75	0.00	1.993	22.34	0.00	3.9	96.1	0.0	-0.30	1.79	0.73	0.79	—	18418	2364	13	0	0	0	0	logfile
✔	6X79	22083	2022-12-14	2020-05-29	2.9	3.14	3.00	3.1	0.013	1.33	0.0	0.09	10.39	0.01	2.382	0.46	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.003	0.60	0.0	0.04	14.47	0.00	2.163	5.91	2.70	2.3	97.7	0.0	0.35	1.35	0.71	0.81	2.61	22251	2850	15	0	51	0	0	logfile
✔	6Y9W	10739	2022-12-14	2020-03-10	4.1	4.30	4.03	4.1	0.012	1.07	3.0	0.11	13.05	0.01	1.911	10.79	0.45	2.0	98.0	0.0	-0.96	0.72	0.77	—	4.0	0.004	0.86	0.0	0.05	13.79	0.01	2.011	18.24	0.00	2.9	97.1	0.0	-0.31	3.46	0.76	0.82	—	18418	2364	13	0	0	0	0	logfile
✔	6U5N	20650	2022-12-13	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.004	0.52	0.0	0.05	15.88	0.00	2.097	5.80	0.44	3.1	96.9	0.0	0.71	0.52	0.67	0.84	2.32	13262	1776	24	0	24	8	0	logfile
✔	6LLY	0915	2022-12-11	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.57	0.0	0.04	15.47	0.00	1.330	8.18	1.16	2.9	97.1	0.0	0.06	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✔	6Y9Z	10742	2022-12-14	2020-03-10	4.8	5.22	4.55	6.0	0.012	1.07	3.0	0.11	13.05	0.01	1.631	10.74	0.45	1.9	98.0	0.0	-0.96	0.71	0.75	—	4.9	0.004	0.87	0.0	0.05	13.03	0.01	2.054	22.15	0.00	3.8	96.2	0.0	-0.71	2.79	0.74	0.80	—	18418	2364	13	0	0	0	0	logfile
✔	6WHC	21671	2022-12-12	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.62	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.002	0.64	0.0	0.04	15.76	0.00	2.153	10.65	0.11	2.8	97.2	0.0	-0.40	1.02	0.82	0.83	1.69	8709	1126	6	0	0	0	0	logfile
✘	6UZV	20963	2022-12-19	2019-11-15	3.1	3.13	—	3.2	0.010	1.18	0.0	0.06	20.36	0.04	1.217	11.55	0.89	4.2	95.8	0.0	-1.85	0.71	0.84	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72606	6711	60	0	408	0	0	logfile
✔	6TKo	10515	2022-12-11	2019-11-28	3.3	3.40	3.21	3.6	0.005	0.51	0.0	0.04	12.09	0.00	2.079	3.00	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.005	0.72	0.0	0.04	14.62	0.00	2.108	15.93	0.23	2.8	97.2	0.0	0.03	1.74	0.76	0.80	2.45	8085	1052	5	0	1	0	0	logfile
✔	7CTT	30469	2022-12-12	2020-08-20	3.2	3.41	—	3.3	0.009	0.51	0.0	0.04	12.96	0.00	2.114	10.40	1.01	4.9	95.1	0.0	-3.11	0.71	0.77	2.67	3.4	0.004	0.63	0.0	0.04	14.86	0.00	2.029	14.52	0.56	4.9	95.1	0.0	-0.89	0.40	0.69	0.77	2.47	8912	1031	7	34	4	0	0	logfile
✔	6TEA	10478	2022-12-15	2019-11-11	3.89	4.22	—	4.0	0.008	1.34	0.0	0.08	12.64	0.01	2.273	14.75	0.00	11.9	88.1	0.0	-4.86	0.89	0.84	1.48	3.9	0.006	1.02	0.0	0.05	16.92	0.00	2.081	35.51	2.19	9.0	91.0	0.0	-3.02	1.03	0.91	0.87	1.48	23328	3120	24	0	0	0	0	logfile
✔	6LHV	0900	2022-12-13	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6U5P	20652	2022-12-13	2019-08-28	3.3	3.44	—	3.4	0.006	0.75	0.0	0.05	14.37	0.00	2.236	3.96	0.43	4.4	95.6	0.0	-3.37	0.70	0.83	2.56	3.4	0.002	0.49	0.0	0.05	16.15	0.00	2.100	5.40	0.50	2.8	97.2	0.0	0.25	0.46	0.65	0.83	2.09	13308	1776	24	0	24	8	0	logfile
✔	6Z16	11027	2022-12-16	2020-05-12	2.98	2.98	—	3.1	0.008	1.13	0.0	0.06	12.51	0.01	2.238	3.51	0.10	4.5	95.5	0.0	-2.64	0.73	0.83	3.55	3.0	0.004	0.73	0.0	0.04	15.74	0.01	2.060	11.10	2.43	4.5	95.5	0.0	0.91	1.31	0.74	0.83	2.89	30250	3744	24	0	30	0	0	logfile

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