Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QX3	4661	2023-08-16	2019-03-07	3.79	3.94	—	3.9	0.007	0.77	0.0	0.04	14.67	0.00	2.050	4.45	0.00	9.7	90.3	0.0	-5.16	0.74	0.79	2.40	3.8	0.004	0.62	0.0	0.04	16.40	0.00	1.988	9.64	0.17	10.1	89.9	0.0	-2.38	0.72	0.76	0.80	2.53	21587	1337	6	14	0	0	10646	logfile
✔	7ToF	26031	2023-08-10	2022-01-24	3.7	3.97	—	4.0	0.003	0.60	0.0	0.04	15.20	0.01	2.163	16.14	0.12	4.4	95.6	0.0	-0.60	0.67	0.64	1.86	4.0	0.004	0.69	0.0	0.05	17.35	0.00	2.168	19.85	0.49	5.4	94.6	0.0	-0.61	0.64	0.68	0.65	1.24	7588	938	2	0	0	0	0	logfile
✔	6XPD	22285	2023-08-09	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.57	0.00	1.952	11.43	0.78	5.4	94.6	0.0	1.02	1.38	0.60	0.83	2.03	4622	606	4	0	4	0	0	logfile
✔	6VFL	21186	2023-08-13	2020-01-05	4.14	4.24	4.09	4.2	0.020	1.69	0.0	0.10	10.16	0.01	2.247	1.36	0.20	1.4	98.6	0.0	0.90	0.77	0.84	—	4.2	0.007	0.83	0.0	0.05	13.18	0.00	2.054	11.25	0.00	4.1	95.9	0.0	0.15	0.85	0.77	0.85	—	14925	1710	42	0	102	0	0	logfile
✔	7E8B	31013	2023-08-23	2021-03-01	4.2	3.74	4.28	3.8	0.003	0.61	0.0	0.04	14.23	0.00	2.120	15.19	0.05	7.3	92.7	0.0	-1.09	0.67	0.65	—	3.6	0.005	0.74	0.0	0.05	14.51	0.01	2.108	21.99	0.05	9.2	90.8	0.0	-1.45	0.58	0.68	0.68	—	36832	4580	8	0	0	0	0	logfile
✔	8DEP	27394	2023-08-09	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	7oNi	12995	2023-08-10	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.85	0.00	2.221	7.18	0.45	4.5	95.5	0.0	1.20	0.39	0.88	0.87	2.13	8840	1141	6	0	7	0	0	logfile
✔	8DMB	27533	2023-08-13	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	15.85	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.55	0.0	0.03	16.17	0.01	1.969	3.37	0.00	3.1	96.9	0.0	0.52	0.57	0.70	0.83	4.27	14225	328	5	275	2	0	5728	logfile
✔	7K1V	22630	2023-08-09	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7o0Z	12684	2023-08-10	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.76	0.0	0.04	15.96	0.00	2.141	14.44	0.00	5.7	94.3	0.0	-0.01	1.19	0.74	0.80	1.31	8730	1142	4	0	0	0	0	logfile
✔	7PBW	13307	2023-08-11	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7VQ4	32085	2023-08-09	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.69	0.0	0.04	17.32	0.00	2.224	8.97	0.43	4.2	95.8	0.0	2.91	0.79	0.59	0.78	0.16	6306	800	2	0	0	0	0	logfile
✔	7L7T	23218	2023-08-14	2020-12-30	3.7	4.14	3.63	3.9	0.023	1.69	0.0	0.16	10.29	0.01	2.419	0.30	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.8	0.005	0.65	0.0	0.04	13.99	0.00	2.225	7.63	0.32	3.2	96.8	0.0	1.05	0.75	0.85	0.85	2.52	15423	1770	39	0	102	0	0	logfile
✔	7UC2	26442	2023-08-14	2022-03-15	2.5	2.71	2.55	2.8	0.009	0.94	0.0	0.05	19.35	0.00	2.199	8.35	1.02	1.9	98.1	0.0	0.65	0.75	0.87	4.24	2.8	0.003	0.53	0.0	0.04	18.79	0.00	2.144	8.44	3.06	2.1	97.9	0.0	0.26	0.36	0.75	0.89	4.12	15820	1900	12	0	8	28	0	logfile
✔	7ZDA	14639	2023-08-11	2022-03-29	3.17	3.35	3.16	3.3	0.006	0.77	0.0	0.05	14.78	0.01	1.941	8.77	0.11	1.7	98.3	0.0	-2.09	0.75	0.84	3.16	3.3	0.003	0.65	0.0	0.04	16.44	0.00	1.982	7.68	0.11	1.6	98.4	0.0	1.12	1.02	0.73	0.88	2.16	9052	1159	4	0	5	0	0	logfile
✔	7ADB	11722	2023-08-27	2020-09-14	4.4	7.85	—	4.4	0.003	0.65	0.0	0.04	15.59	0.00	2.026	14.90	4.90	5.3	94.7	0.0	-3.41	0.89	0.69	—	4.4	0.003	0.66	0.0	0.04	14.45	0.00	1.880	21.40	0.02	4.5	95.5	0.0	-0.71	2.54	0.95	0.87	—	51330	6331	26	75	18	15	0	logfile
✔	8DE7	27386	2023-08-09	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.05	0.0	0.06	15.00	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.005	1.04	0.0	0.05	16.61	0.01	2.034	22.33	0.67	3.3	96.7	0.0	1.70	1.46	0.58	0.77	1.03	4168	526	4	0	4	0	0	logfile
✔	7X2C	32964	2023-08-12	2022-02-25	3.2	3.88	—	3.8	0.006	0.71	0.0	0.05	13.60	0.00	2.102	9.59	0.48	2.0	98.0	0.0	0.97	0.58	0.72	1.80	3.8	0.003	0.58	0.0	0.04	15.52	0.00	2.106	10.23	0.48	2.0	98.0	0.0	0.97	0.37	0.56	0.70	1.04	7953	1031	6	0	3	0	0	logfile
✔	7SNi	25227	2023-08-14	2021-10-28	2.5	2.71	—	2.8	0.006	0.74	0.0	0.05	15.97	0.00	2.239	8.51	0.06	2.1	97.9	0.0	-0.02	0.71	0.80	3.21	2.8	0.003	0.57	0.0	0.04	17.35	0.00	2.081	11.74	1.64	2.3	97.7	0.0	-0.14	0.37	0.68	0.81	3.33	16533	1952	12	0	12	233	0	logfile
✔	8BGU	16036	2023-08-09	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	16.17	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.003	0.57	0.0	0.03	16.68	0.00	2.102	20.05	0.00	8.8	91.2	0.0	-0.51	2.19	0.92	0.87	—	4779	447	5	121	1	0	0	logfile

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