Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S9V	24938	2023-04-23	2021-09-21	3.3	3.25	—	3.4	0.007	0.86	0.0	0.05	13.96	0.01	2.257	2.04	0.00	5.1	94.9	0.0	-1.75	0.83	0.82	2.23	3.4	0.002	0.53	0.0	0.04	15.36	0.00	2.200	3.70	0.20	3.1	96.9	0.0	-0.13	1.19	0.83	0.83	2.05	14286	1825	3	0	1	0	0	logfile
✔	6TTU	10585	2023-04-22	2019-12-30	3.7	3.87	3.69	3.8	0.006	0.88	0.0	0.05	15.10	0.00	1.312	13.58	0.29	9.3	90.7	0.0	-2.77	0.82	0.80	1.42	3.7	0.003	0.66	0.0	0.04	17.04	0.00	2.078	10.66	0.22	6.3	93.7	0.0	-0.02	1.64	0.82	0.80	1.13	12746	1604	9	0	3	0	0	logfile
✔	6CiJ	7480	2023-04-25	2018-02-24	3.9	4.19	—	3.9	0.003	0.58	0.0	0.04	19.42	0.00	2.055	13.51	2.25	3.6	96.4	0.0	-2.66	0.90	0.85	2.69	3.9	0.003	0.61	0.0	0.04	20.48	0.00	2.179	8.83	0.17	3.2	96.8	0.0	0.11	0.62	0.90	0.87	2.59	20413	2045	13	212	4	0	0	logfile
✔	7X24	32957	2023-04-21	2022-02-25	3.4	2.84	3.24	3.2	0.006	1.21	0.0	0.05	15.74	0.01	2.080	8.34	0.00	4.0	96.0	0.0	0.37	0.65	0.82	2.68	3.1	0.004	0.61	0.0	0.04	16.67	0.00	1.956	9.40	0.00	4.9	95.1	0.0	0.14	0.29	0.66	0.84	2.54	10286	1263	4	0	14	0	0	logfile
✘	6PPL	20442	2023-04-20	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✔	7LUE	23521	2023-04-23	2021-02-22	2.9	3.08	—	3.1	0.003	0.49	0.0	0.04	10.43	0.00	2.200	5.63	0.86	1.7	98.3	0.0	0.33	0.73	0.82	3.96	3.0	0.006	0.63	0.0	0.05	15.37	0.00	2.079	9.53	3.11	2.8	97.2	0.0	-0.10	1.16	0.69	0.82	3.55	15018	1947	9	0	0	0	0	logfile
✔	8HGG	34738	2023-04-27	2022-11-14	3.64	3.02	3.51	3.5	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.003	0.57	0.0	0.04	14.32	0.00	2.112	8.48	0.18	4.8	95.2	0.0	-0.86	0.62	0.68	0.70	2.22	25404	3238	6	0	2	0	0	logfile
✔	7S1M	24805	2023-04-21	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.54	0.0	0.04	15.96	0.00	2.152	5.62	1.36	1.8	98.2	0.0	1.68	0.92	0.77	0.87	3.72	9160	1168	6	0	1	0	0	logfile
✔	6CM3	7516	2023-04-27	2018-03-02	3.54	3.68	—	3.6	0.010	1.08	0.0	0.07	9.44	0.01	2.044	4.95	0.11	9.1	90.9	0.0	-4.10	0.77	0.82	2.58	3.6	0.004	0.81	2.0	0.05	15.25	0.00	1.291	12.22	0.53	6.3	93.7	0.0	-1.57	1.53	0.77	0.83	2.31	25455	3177	39	0	90	0	0	logfile
✔	6TAR	10425	2023-04-20	2019-10-30	2.8	2.81	—	3.7	0.005	0.91	0.0	0.06	14.53	0.01	2.319	5.38	0.69	8.5	91.5	0.0	-3.91	0.62	0.81	1.84	3.7	0.002	0.61	0.0	0.04	17.33	0.00	2.267	4.70	3.75	6.5	93.5	0.0	0.67	0.65	0.62	0.82	1.49	6715	820	5	0	0	0	0	logfile
✔	6R4P	4722	2023-04-20	2019-03-22	3.1	3.45	—	3.2	0.008	1.04	0.0	0.06	11.94	0.01	2.080	4.30	0.57	6.2	93.8	0.0	-3.18	0.83	0.86	4.07	3.2	0.005	0.64	0.0	0.04	14.45	0.00	1.928	9.61	0.42	5.0	95.0	0.0	0.15	1.02	0.84	0.88	3.35	6583	819	2	0	2	0	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	7U5i	26351	2023-04-26	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.72	0.0	0.05	16.39	0.00	2.159	15.05	0.16	2.1	97.9	0.0	-0.02	0.67	0.67	0.78	1.94	23539	2904	16	0	0	123	0	logfile
✔	6HZ5	0311	2023-04-24	2018-10-22	4.2	4.28	4.18	4.3	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.94	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.003	0.58	0.0	0.04	14.66	0.00	1.803	11.78	0.05	4.9	95.1	0.0	0.00	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7PiK	13439	2023-04-23	2021-08-20	2.68	2.96	2.75	2.9	0.003	0.61	0.0	0.04	19.30	0.00	2.284	3.33	0.08	2.9	97.1	0.0	0.06	0.73	0.79	3.31	2.9	0.003	0.58	0.0	0.04	21.11	0.00	2.102	4.08	1.73	2.9	97.1	0.0	0.60	0.33	0.73	0.82	2.74	15475	1624	7	126	0	0	0	logfile
✔	6M15	30037	2023-04-26	2020-02-24	2.38	2.44	—	2.4	0.009	1.05	0.0	0.07	9.68	0.01	2.141	3.81	0.12	3.0	97.0	0.0	-2.43	0.80	0.87	5.62	2.4	0.003	0.68	0.0	0.05	13.75	0.00	2.265	4.01	0.78	2.1	97.9	0.0	0.57	0.46	0.81	0.89	4.46	23471	2895	30	0	72	71	0	logfile
✔	6R3Q	4719	2023-04-21	2019-03-20	3.4	3.77	—	3.5	0.011	1.24	0.0	0.07	12.61	0.01	2.080	5.88	0.58	6.7	93.3	0.0	-3.70	0.79	0.81	2.86	3.5	0.003	0.68	0.0	0.04	14.70	0.00	2.018	10.72	0.38	3.9	96.1	0.0	1.03	2.11	0.80	0.82	2.04	9529	1182	2	0	2	0	0	logfile
✔	7A94	11684	2023-04-29	2020-09-01	3.9	4.30	4.00	4.0	0.007	0.87	3.0	0.06	13.58	0.01	2.085	3.58	0.87	6.8	93.2	0.0	-1.82	0.89	0.84	1.86	4.0	0.003	0.65	0.0	0.04	14.33	0.00	2.086	7.68	0.21	4.0	96.0	0.0	-0.09	1.62	0.89	0.85	1.41	30463	3825	8	0	24	0	0	logfile
✔	8DBM	27290	2023-04-28	2022-06-14	2.4	2.48	2.47	2.5	0.011	0.82	0.0	0.06	16.47	0.00	1.884	7.64	2.67	3.3	96.7	0.0	0.14	0.68	0.82	4.58	2.4	0.003	0.52	0.0	0.05	16.98	0.00	1.939	9.86	2.89	2.8	97.2	0.0	0.68	0.45	0.70	0.86	4.19	28716	3708	36	0	48	24	0	logfile

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