Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JLX	22383	2022-07-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6TMJ	10523	2022-07-04	2019-12-04	3.5	3.68	3.39	3.7	0.007	0.62	0.0	0.04	13.81	0.01	2.037	6.53	0.00	8.7	91.3	0.0	-4.51	0.56	0.81	2.54	3.7	0.004	0.59	0.0	0.04	15.71	0.00	2.071	7.08	0.43	4.2	95.8	0.0	1.65	1.42	0.63	0.84	2.27	18084	1204	15	0	0	0	9178	logfile
✔	7K3V	22657	2022-07-07	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	3.06	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	2.14	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✘	6ZTQ	11424	2022-07-04	2020-07-20	3.0	3.11	3.16	3.1	0.011	1.02	0.0	1.03	15.56	0.01	1.177	5.41	0.07	7.9	92.1	0.0	-3.27	0.66	0.83	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67072	8182	69	0	35	0	0	logfile
✔	7JLU	22380	2022-07-03	2020-07-30	3.8	3.27	—	3.8	0.003	0.78	0.0	0.05	16.63	0.00	2.187	11.95	0.21	9.3	90.7	0.0	-1.56	0.74	0.78	1.46	3.8	0.003	0.69	0.0	0.04	17.73	0.00	2.061	10.68	0.21	8.3	91.7	0.0	-1.74	0.39	0.74	0.79	1.82	8592	1079	2	0	1	0	0	logfile
✔	6YNX	10859	2022-07-07	2020-04-14	2.5	2.72	2.48	2.6	0.010	1.00	0.0	0.04	15.32	0.00	1.374	3.55	0.30	2.3	97.7	0.0	-2.86	0.73	0.89	5.87	2.6	0.003	0.54	0.0	0.04	15.75	0.00	1.297	7.60	0.57	2.8	97.2	0.0	1.16	1.05	0.74	0.90	4.91	134171	7929	64	0	50	0	64331	logfile
✔	7K1S	22629	2022-07-04	2020-09-08	3.9	4.13	—	4.1	0.006	0.89	0.0	0.06	14.28	0.01	1.647	15.52	0.38	2.1	97.9	0.0	-2.61	0.73	0.73	1.66	4.1	0.004	0.66	0.0	0.04	16.27	0.00	2.109	11.19	0.45	4.3	95.7	0.0	-0.65	1.27	0.76	0.76	1.44	14409	1752	9	0	21	0	0	logfile
✔	6TMG	10520	2022-07-04	2019-12-04	2.8	2.79	2.73	2.8	0.008	0.92	0.0	0.04	15.59	0.00	1.898	3.40	0.69	2.9	97.1	0.0	-0.62	0.73	0.86	4.49	2.8	0.003	0.55	0.0	0.04	16.94	0.00	1.939	7.73	1.30	3.0	97.0	0.0	1.97	1.09	0.75	0.89	3.82	116594	7122	68	0	44	0	56046	logfile
✔	6W1N	21513	2022-07-02	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.56	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.77	0.0	0.04	14.18	0.00	2.104	12.19	0.22	3.1	96.9	0.0	0.83	0.77	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	7KRA	23003	2022-07-04	2020-11-19	3.2	3.86	—	3.7	0.005	0.82	0.0	0.05	15.01	0.00	2.182	3.71	0.05	2.9	97.1	0.0	-2.08	0.77	0.83	3.19	3.7	0.003	0.66	0.0	0.04	16.43	0.00	2.125	7.86	0.21	8.4	91.6	0.0	-0.78	0.37	0.77	0.84	2.84	17293	2119	15	0	51	0	0	logfile
✔	6X65	22070	2022-07-05	2020-05-27	3.7	3.85	—	3.4	0.010	1.37	0.0	0.07	17.17	0.01	2.312	7.14	12.45	5.6	94.4	0.0	-4.11	0.70	0.73	1.60	3.4	0.005	0.85	0.0	0.04	15.70	0.00	2.041	19.37	0.82	6.1	93.9	0.0	-0.49	0.65	0.71	0.76	1.28	124910	10998	153	0	7718	0	0	logfile
✘	7KHR	22880	2022-07-03	2020-10-21	3.62	3.58	—	3.5	0.006	0.91	9.0	0.06	14.88	0.01	1.100	6.16	0.27	4.6	95.3	0.0	-6.01	0.71	0.86	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61913	8212	44	0	36	0	0	logfile
✔	6X6L	22077	2022-07-07	2020-05-28	3.0	3.21	—	3.1	0.007	0.78	0.0	0.05	17.96	0.01	2.267	11.62	10.29	3.6	96.4	0.0	-3.79	0.77	0.84	2.57	3.2	0.003	0.68	0.0	0.04	18.77	0.00	2.112	16.29	5.88	3.8	96.2	0.0	-0.18	1.56	0.78	0.84	1.57	40613	5083	34	0	0	0	0	logfile
✔	6M7D	30129	2022-07-03	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.64	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	16.07	0.00	2.239	8.74	1.46	1.5	98.5	0.0	2.10	0.84	0.35	0.87	3.01	3280	412	2	6	0	0	0	logfile
✔	6Z6P	11102	2022-07-06	2020-05-28	4.43	8.11	—	4.4	0.010	1.62	4.0	0.09	23.31	0.01	2.197	9.62	1.29	7.5	92.5	0.0	-4.87	0.87	0.74	—	4.4	0.007	0.89	0.0	0.05	22.52	0.01	1.896	44.90	0.00	10.1	89.9	0.0	-2.10	1.13	0.88	0.65	—	31115	3138	16	290	2	0	0	logfile
✔	6YNV	10857	2022-07-03	2020-04-14	2.8	3.33	2.74	3.2	0.014	0.90	0.0	0.06	15.71	0.01	2.129	6.07	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.004	0.55	0.0	0.04	15.81	0.00	2.217	2.67	0.28	5.5	94.5	0.0	0.31	1.16	0.64	0.90	5.15	6724	417	1	0	1	0	3285	logfile
✔	6YS3	10891	2022-07-05	2020-04-20	2.58	3.00	2.56	2.8	0.012	1.10	0.0	0.06	17.37	0.01	1.205	6.50	0.90	7.2	92.8	0.0	-4.18	0.83	0.90	3.51	2.8	0.009	0.72	0.0	0.04	16.49	0.01	2.022	10.57	2.44	5.1	94.9	0.0	-0.79	1.56	0.83	0.92	3.46	90553	3136	32	3081	0	0	0	logfile
✔	6ZJA	11233	2022-07-05	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.19	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.72	0.0	0.05	15.95	0.01	1.820	1.85	0.56	4.3	95.7	0.0	0.02	0.39	0.78	0.89	6.77	77951	9684	60	0	36	3191	0	logfile
✘	6X36	22019	2022-07-06	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.93	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✘	7DFL	30665	2022-07-03	2020-11-09	3.3	4.03	—	3.9	0.008	0.95	0.0	0.06	11.96	0.01	1.313	10.06	0.00	6.1	93.9	0.0	-0.96	0.63	0.75	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8987	1133	6	0	1	0	0	logfile

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