Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oZV	13138	2022-04-04	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.41	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.05	0.00	2.3	97.7	0.0	-0.10	1.89	0.73	0.83	2.74	8409	991	6	22	2	0	0	logfile
✔	7A4A	11630	2022-04-06	2020-08-19	3.76	3.95	3.75	4.0	0.007	0.70	0.0	0.04	11.64	0.01	2.109	13.12	2.96	12.8	87.2	0.0	-6.00	0.69	0.78	2.12	4.0	0.004	0.74	0.0	0.05	14.50	0.00	2.162	14.33	0.76	12.5	87.5	0.0	-3.44	0.87	0.68	0.78	2.21	19785	1317	6	0	3	0	9618	logfile
✔	7NNT	12483	2022-04-04	2021-02-25	3.4	3.53	3.50	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.003	0.54	0.0	0.04	15.49	0.00	2.209	7.47	0.00	1.3	98.7	0.0	0.87	1.05	0.67	0.83	1.76	7666	979	4	0	0	0	0	logfile
✔	7RB9	24400	2022-04-05	2021-07-05	3.76	4.01	3.83	3.9	0.002	0.57	0.0	0.04	14.64	0.00	2.228	9.31	0.00	3.2	96.8	0.0	0.60	0.59	0.85	1.62	3.9	0.003	0.63	0.0	0.04	15.91	0.00	1.990	9.42	0.26	4.4	95.6	0.0	0.40	2.15	0.60	0.87	2.05	14193	1786	7	0	6	0	0	logfile
✔	7oZ3	13119	2022-04-04	2021-06-25	4.46	4.17	4.34	4.0	0.009	1.36	2.0	0.08	23.15	0.00	2.334	8.45	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	4.0	0.003	0.59	0.0	0.04	21.27	0.00	2.177	10.43	0.15	2.9	97.1	0.0	1.60	0.77	0.86	0.83	—	8209	804	8	88	2	0	0	logfile
✔	7N6B	24206	2022-04-04	2021-06-08	2.66	2.57	—	2.6	0.006	0.75	0.0	0.05	16.31	0.01	2.147	8.98	0.00	3.3	96.7	0.0	0.66	0.53	0.72	2.30	2.6	0.010	0.95	1.0	0.04	17.23	0.01	2.114	9.39	2.26	3.6	96.4	0.0	1.29	0.42	0.55	0.74	1.75	5942	757	1	0	2	0	0	logfile
✔	7EZ0	31385	2022-04-04	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.69	0.0	0.04	15.71	0.00	1.877	8.66	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	7oNB	12994	2022-04-06	2021-05-25	3.1	3.40	3.04	3.0	0.005	1.01	0.0	0.06	13.90	0.01	2.273	5.59	0.00	3.6	96.4	0.0	-1.28	0.76	0.71	1.66	3.0	0.003	0.62	0.0	0.04	15.70	0.00	2.155	11.41	0.16	2.9	97.1	0.0	-0.05	0.78	0.80	0.81	2.32	20140	2568	14	46	6	0	0	logfile
✔	7NL0	12453	2022-04-05	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.60	0.0	0.04	30.05	0.00	2.226	11.10	0.16	2.7	97.3	0.0	2.26	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7E3B	30978	2022-04-04	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.26	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.004	0.70	0.0	0.05	13.25	0.00	2.242	13.83	0.00	7.0	93.0	0.0	-1.24	0.40	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7oUG	13076	2022-04-05	2021-06-11	3.1	2.33	3.12	1.7	0.005	0.73	0.0	0.04	17.64	0.01	1.769	5.59	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.5	0.004	0.67	0.0	0.04	19.55	0.01	1.906	9.86	0.62	2.7	97.3	0.0	-0.02	0.64	0.78	0.79	2.39	15090	1664	16	80	10	8	0	logfile
✔	7N4X	24180	2022-04-04	2021-06-04	3.33	3.49	—	3.5	0.014	1.76	0.0	0.21	15.23	0.01	2.134	5.53	1.23	7.5	92.5	0.0	-3.15	0.52	0.76	2.75	3.5	0.004	0.61	0.0	0.04	15.93	0.01	2.088	6.70	0.25	3.8	96.2	0.0	0.17	0.94	0.71	0.87	2.27	7647	953	5	0	13	0	0	logfile
✔	7oUF	13075	2022-04-05	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.57	0.0	0.04	17.33	0.00	1.686	6.18	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.5	0.010	1.13	1.0	0.05	19.85	0.01	1.886	11.27	1.99	3.3	96.7	0.0	0.10	1.73	0.79	0.79	2.72	15094	1664	16	80	10	12	0	logfile
✔	7E39	30977	2022-04-04	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.65	0.0	0.05	15.89	0.00	2.161	11.51	0.00	6.2	93.8	0.0	-2.43	0.42	0.50	0.74	2.23	3074	414	4	0	1	0	0	logfile
✔	7oUH	13077	2022-04-05	2021-06-11	3.5	2.47	3.44	2.1	0.013	0.74	0.0	0.04	17.34	0.01	1.666	7.47	0.00	1.6	98.4	0.0	0.40	0.76	0.71	2.22	1.8	0.004	0.80	0.0	0.04	19.82	0.01	1.880	14.36	0.62	3.2	96.8	0.0	-0.45	0.67	0.75	0.75	2.34	15088	1664	18	80	10	6	0	logfile
✔	7EZK	31388	2022-04-04	2021-06-01	3.1	2.25	—	2.1	0.010	1.02	0.0	0.06	13.64	0.01	2.206	3.99	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.004	0.66	0.0	0.04	15.92	0.00	2.150	9.87	0.65	1.9	98.1	0.0	0.80	1.61	0.75	0.77	2.92	7196	922	5	0	0	0	0	logfile
✔	7NHS	12339	2022-04-08	2021-02-11	2.3	2.38	—	2.3	0.002	0.48	0.0	0.04	9.51	0.00	2.284	5.78	0.00	3.1	96.9	0.0	-2.35	0.74	0.81	4.34	2.3	0.003	0.58	0.0	0.04	14.05	0.00	2.121	8.87	1.38	3.5	96.5	0.0	1.15	1.01	0.76	0.82	3.59	32240	4176	8	0	0	0	0	logfile
✔	7NiH	12359	2022-04-08	2021-02-12	2.6	2.69	—	2.6	0.008	0.73	0.0	0.05	12.99	0.00	1.999	7.61	0.00	3.9	96.1	0.0	-3.00	0.75	0.86	4.27	2.7	0.002	0.56	0.0	0.04	15.41	0.00	2.027	7.82	1.60	3.7	96.3	0.0	0.94	0.97	0.76	0.88	3.15	32464	4176	16	0	16	0	0	logfile
✔	7LiD	23374	2022-04-05	2021-01-27	2.9	3.96	—	3.9	0.006	0.88	0.0	0.04	15.13	0.01	2.330	3.66	1.47	3.5	96.5	0.0	-2.01	0.69	0.76	0.95	3.9	0.003	0.63	0.0	0.04	17.00	0.00	2.263	8.05	2.29	2.9	97.1	0.0	2.54	0.54	0.51	0.69	0.79	12140	1524	8	0	4	0	0	logfile
✔	6XEU	22150	2022-04-05	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.45	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.58	0.0	0.04	15.83	0.00	2.299	2.78	0.35	4.7	95.3	0.0	0.13	0.36	0.77	0.89	3.04	10544	1312	8	0	16	0	0	logfile

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