Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VQX	32095	2023-08-11	2021-10-21	2.74	2.89	—	2.9	0.004	0.55	0.0	0.04	14.12	0.00	2.094	8.36	0.00	3.6	96.4	0.0	0.32	0.63	0.79	3.28	2.9	0.004	0.56	0.0	0.04	16.26	0.00	2.098	7.30	1.62	3.5	96.5	0.0	0.97	0.30	0.62	0.82	2.80	9049	1148	6	0	0	0	0	logfile
✔	6SoF	10273	2023-08-21	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	8GSZ	34244	2023-08-09	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	7FiY	31606	2023-08-11	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.14	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.58	0.0	0.04	14.14	0.00	2.105	9.47	0.31	2.5	97.5	0.0	1.25	1.71	0.70	0.80	2.00	9367	1152	7	0	6	0	0	logfile
✔	7EW4	31347	2023-08-11	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.43	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.002	0.52	0.0	0.04	15.13	0.00	2.101	8.96	0.62	2.8	97.2	0.0	0.62	0.39	0.70	0.81	2.46	8929	1145	6	0	3	0	0	logfile
✔	6X96	22102	2023-08-15	2020-06-02	3.4	4.14	3.71	4.0	0.022	1.74	0.0	0.13	10.21	0.01	2.363	0.64	0.00	2.1	97.9	0.0	1.05	0.77	0.80	3.02	4.0	0.004	0.80	0.0	0.05	14.89	0.00	2.196	10.96	0.55	3.9	96.0	0.1	0.05	2.47	0.66	0.72	2.29	18915	2322	27	0	63	0	0	logfile
✔	7Y9T	33691	2023-08-10	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.67	0.0	0.04	13.62	0.00	2.220	5.37	0.36	4.5	95.5	0.0	-1.47	0.59	0.67	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	7EW2	31345	2023-08-11	2021-05-24	3.1	3.30	—	3.4	0.003	0.77	0.0	0.05	14.09	0.00	2.201	10.55	0.61	1.7	98.3	0.0	-0.25	0.60	0.68	1.56	3.4	0.003	0.55	0.0	0.04	16.07	0.00	2.187	8.87	0.41	3.9	96.1	0.0	0.20	0.42	0.60	0.74	1.57	9001	1149	5	0	1	0	0	logfile
✔	7N0C	24103	2023-08-09	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.63	0.0	0.04	14.78	0.00	1.116	12.44	0.36	5.0	95.0	0.0	-1.35	0.48	0.72	0.80	1.96	6088	644	6	49	7	1	0	logfile
✔	8GUB	34272	2023-08-11	2022-09-11	2.73	2.94	2.83	3.0	0.008	0.62	0.0	0.04	14.24	0.00	1.994	34.45	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.003	0.58	0.0	0.04	17.15	0.00	2.200	8.26	2.52	3.7	96.3	0.0	0.17	1.20	0.66	0.79	3.21	10358	1253	3	0	1	0	0	logfile
✔	8DN8	27556	2023-08-12	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.66	0.0	0.04	16.11	0.00	2.185	11.45	0.60	5.6	94.4	0.0	-0.15	0.57	0.72	0.81	1.19	10638	1300	6	0	2	0	0	logfile
✔	7WVV	32859	2023-08-10	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.55	0.0	0.04	15.35	0.00	2.136	9.20	1.89	2.9	97.1	0.0	0.43	0.45	0.62	0.79	2.80	7020	911	5	0	0	0	0	logfile
✔	6XDC	22136	2023-08-09	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.003	0.60	0.0	0.04	15.30	0.00	2.197	9.57	2.59	3.7	96.3	0.0	0.98	1.70	0.45	0.69	3.50	3150	386	2	0	0	0	0	logfile
✔	7VBi	31880	2023-08-11	2021-08-31	3.0	3.19	—	3.2	0.011	1.13	0.0	0.06	14.91	0.01	2.181	4.22	0.81	5.6	94.4	0.0	-3.46	0.66	0.80	3.10	3.2	0.003	0.62	0.0	0.04	16.91	0.00	2.189	8.12	1.42	4.1	95.9	0.0	0.15	1.63	0.65	0.80	2.29	9223	1158	6	0	0	0	0	logfile
✔	7WVX	32861	2023-08-10	2022-02-11	2.8	2.96	—	3.0	0.002	0.49	0.0	0.04	12.15	0.00	2.251	8.52	0.00	2.1	97.9	0.0	0.86	0.60	0.76	2.80	3.0	0.004	0.60	0.0	0.04	15.80	0.00	2.150	11.79	2.95	3.2	96.8	0.0	0.12	1.19	0.63	0.83	3.15	7070	920	5	0	0	0	0	logfile
✔	7XXi	33504	2023-08-10	2022-05-30	3.0	3.20	2.86	3.2	0.006	0.78	0.0	0.04	12.73	0.01	2.202	9.40	0.14	2.9	97.1	0.0	0.21	0.58	0.70	1.80	3.2	0.003	0.65	0.0	0.04	16.13	0.00	2.169	14.10	2.18	4.8	95.2	0.0	-0.03	1.19	0.60	0.77	1.23	7002	907	5	0	1	0	0	logfile
✔	7XiB	33201	2023-08-10	2022-04-12	2.23	2.35	2.26	2.4	0.009	0.71	0.0	0.17	18.00	0.01	2.184	6.98	4.14	3.9	96.1	0.0	-1.86	0.65	0.81	5.40	2.4	0.003	0.72	0.0	0.07	18.45	0.00	2.209	6.46	2.71	3.4	96.6	0.0	0.04	0.43	0.65	0.82	4.56	7178	815	6	24	2	196	0	logfile
✘	7VNC	32038	2023-08-20	2021-10-10	3.7	3.77	—	3.7	0.009	0.77	0.0	0.05	14.16	0.00	2.149	9.92	0.00	6.4	93.6	0.0	-2.21	0.64	0.71	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26716	3325	22	0	51	0	0	logfile
✔	6XLJ	22245	2023-08-23	2020-06-28	2.7	3.34	—	3.2	0.014	1.03	1.0	0.07	17.16	0.01	1.853	8.54	0.16	1.7	98.3	0.0	-3.00	0.75	0.81	2.68	3.2	0.004	0.62	0.0	0.04	18.48	0.00	1.461	9.70	2.14	3.1	96.9	0.0	-0.19	0.50	0.70	0.76	2.13	35902	4221	17	111	13	0	0	logfile
✔	8C4U	16429	2023-08-12	2023-01-04	3.36	3.57	3.40	3.5	0.005	0.74	1.0	0.05	16.57	0.00	2.058	7.62	0.81	3.7	96.3	0.0	0.43	0.77	0.83	2.59	3.5	0.004	0.55	0.0	0.04	16.87	0.00	2.033	7.67	0.27	3.6	96.4	0.0	1.06	1.14	0.79	0.84	2.51	10952	1260	4	38	1	0	0	logfile

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