Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XS6	22301	2023-04-24	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7KKK	22907	2023-04-19	2020-10-27	3.03	3.38	3.82	3.3	0.021	1.74	3.0	0.12	10.44	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.002	0.57	0.0	0.04	14.50	0.00	1.873	4.96	0.28	1.9	98.1	0.0	0.57	1.49	0.62	0.84	3.19	52320	3360	21	0	54	0	25449	logfile
✔	6HJN	0234	2023-04-22	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	12.09	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.003	0.68	0.0	0.04	14.00	0.00	2.096	6.24	0.16	8.3	91.7	0.0	-0.32	0.55	0.89	0.89	3.27	12309	1488	24	0	48	0	0	logfile
✔	7URT	26718	2023-04-20	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	14.02	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.036	3.37	11.0	0.30	17.01	0.01	0.291	9.27	1.09	1.7	98.2	0.1	1.92	1.13	0.69	0.81	2.58	107880	13260	60	0	120	0	0	logfile
✔	6ZiQ	11228	2023-04-26	2020-06-26	4.33	3.58	4.02	3.4	0.005	0.74	0.0	0.08	14.69	0.00	1.911	19.90	0.00	8.6	91.4	0.0	-1.50	0.48	0.72	—	3.4	0.003	0.61	0.0	0.08	14.71	0.00	1.943	12.69	0.08	5.5	94.5	0.0	0.57	0.60	0.47	0.72	—	22255	1385	15	0	0	0	11316	logfile
✔	7TPK	26058	2023-04-19	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	8E2E	27833	2023-04-27	2022-08-15	1.98	2.09	2.04	2.1	0.007	0.74	0.0	0.04	14.15	0.01	2.114	9.86	1.48	3.7	96.3	0.0	-0.81	0.69	0.86	6.40	2.1	0.004	0.60	0.0	0.04	14.44	0.00	2.034	8.11	1.48	1.4	98.6	0.0	2.35	0.31	0.69	0.86	6.30	26633	1654	4	0	0	377	13332	logfile
✔	6Z1U	11040	2023-04-23	2020-05-14	3.47	3.57	3.25	3.5	0.008	0.74	0.0	0.05	14.81	0.00	1.905	11.83	0.00	8.9	91.1	0.0	-1.62	0.68	0.83	2.33	3.5	0.006	0.58	0.0	0.04	15.72	0.00	1.662	9.48	0.06	6.5	93.5	0.0	-0.44	0.37	0.68	0.85	2.15	65073	4239	32	0	11	17	32803	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6Yo0	10862	2023-04-20	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.62	0.00	1.300	8.27	0.64	4.4	95.6	0.0	1.08	0.80	0.84	0.89	3.23	55780	3598	17	0	10	0	28102	logfile
✔	7PHG	13415	2023-04-20	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.66	0.0	0.04	13.37	0.00	1.921	20.25	0.00	11.6	88.4	0.0	-3.54	1.28	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	6oEE	20020	2023-04-28	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	8iKA	35507	2023-04-25	2023-02-28	2.75	2.89	2.81	2.9	0.008	1.22	0.0	0.07	12.95	0.02	2.225	4.42	0.00	1.5	98.5	0.0	-0.45	0.82	0.88	4.57	2.9	0.005	0.55	0.0	0.04	16.79	0.00	2.145	3.77	1.06	1.4	98.6	0.0	1.61	1.50	0.82	0.90	4.07	122040	15900	60	0	0	0	0	logfile
✔	8A8V	15241	2023-04-28	2022-06-24	3.34	3.62	3.37	3.7	0.004	0.79	0.0	0.05	15.57	0.01	2.208	8.03	0.11	3.5	96.5	0.0	-0.58	0.75	0.79	1.81	3.7	0.003	0.62	0.0	0.04	16.86	0.00	2.175	11.46	0.35	3.2	96.8	0.0	0.71	0.42	0.76	0.83	1.53	27164	3396	13	0	33	0	0	logfile
✔	7T9i	25758	2023-04-26	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile
✔	6X6K	22076	2023-04-21	2020-05-28	3.1	3.22	—	3.2	0.011	1.23	2.0	0.07	13.77	0.01	2.210	8.21	0.00	5.5	94.5	0.0	-1.94	0.69	0.84	2.88	3.2	0.004	0.69	0.0	0.05	16.58	0.00	2.126	16.02	0.31	5.4	94.6	0.0	-0.16	0.63	0.70	0.85	2.39	60970	7602	42	0	0	0	0	logfile
✔	7TAS	25783	2023-04-19	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.50	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	14.00	0.00	2.248	5.95	0.00	3.7	96.3	0.0	-0.17	0.53	0.65	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	6YY0	11001	2023-04-21	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.18	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.003	0.53	0.0	0.04	16.05	0.00	1.773	6.14	0.16	4.5	95.5	0.0	0.36	0.33	0.73	0.86	2.63	61162	3926	25	0	11	17	30826	logfile
✔	6VQR	21355	2023-04-22	2020-02-05	2.78	3.29	—	3.3	0.013	0.97	2.0	0.06	16.45	0.00	2.021	15.78	8.21	8.3	91.7	0.0	-2.79	0.54	0.76	2.56	3.3	0.005	0.70	0.0	0.04	17.73	0.00	2.092	12.71	5.90	5.1	94.9	0.0	0.03	1.15	0.52	0.76	2.18	11254	1420	10	0	5	0	0	logfile
✔	7R41	14251	2023-04-26	2022-02-08	2.3	2.35	—	2.4	0.008	0.85	0.0	0.84	16.91	0.00	1.904	3.40	1.01	2.4	97.5	0.0	0.57	0.71	0.90	5.72	2.4	0.007	1.31	0.0	0.25	16.89	0.00	1.989	4.52	1.04	1.8	98.2	0.0	1.62	0.79	0.71	0.91	5.22	69138	8194	111	0	57	1307	0	logfile

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