Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H5Q	0141	2022-12-22	2018-07-25	3.3	3.43	—	3.4	0.010	1.14	0.0	0.06	11.79	0.01	1.628	11.72	1.54	4.0	96.0	0.0	-4.31	0.46	0.87	4.00	3.4	0.006	0.72	0.0	0.04	14.91	0.00	2.122	11.78	0.64	3.9	96.1	0.0	0.25	0.61	0.49	0.90	2.87	46650	5715	30	90	0	0	0	logfile
✔	6RVX	10016	2022-12-12	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.003	0.70	0.0	0.04	15.26	0.00	2.181	9.35	0.39	4.5	95.5	0.0	-0.61	1.15	0.63	0.79	0.95	9627	1290	3	0	0	0	0	logfile
✔	6DW0	8922	2022-12-12	2018-06-26	3.8	3.44	—	4.0	0.005	0.93	0.0	0.05	11.05	0.01	2.282	5.00	0.08	5.7	94.3	0.0	-3.98	0.46	0.73	1.86	4.0	0.004	0.96	0.0	0.05	15.94	0.00	2.060	21.37	0.74	6.1	93.9	0.0	-1.27	1.62	0.49	0.75	1.94	11929	1529	13	0	24	0	0	logfile
✔	6NZU	0560	2022-12-14	2019-02-14	3.2	3.33	3.22	3.3	0.013	0.89	0.0	0.06	14.62	0.01	2.057	2.30	0.00	7.3	92.7	0.0	-5.92	0.71	0.84	3.98	3.3	0.004	0.66	0.0	0.05	16.27	0.00	2.238	6.90	0.07	5.0	95.0	0.0	-1.43	0.57	0.70	0.84	3.11	12570	1588	16	0	6	0	0	logfile
✘	6S3K	10092	2022-12-18	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.98	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8902	1146	4	0	6	0	0	logfile
✔	6GTC	0061	2022-12-12	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	15.72	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.70	0.0	0.04	18.48	0.00	2.112	14.14	0.43	7.6	92.4	0.0	-2.87	1.13	0.71	0.70	1.53	11931	1280	4	65	0	0	0	logfile
✔	6CAA	7441	2022-12-11	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.86	0.0	0.04	15.83	0.00	2.180	13.35	0.12	10.6	89.4	0.0	-1.13	2.15	0.65	0.79	1.41	7508	954	2	0	0	0	0	logfile
✔	6RFL	4868	2022-12-11	2019-04-15	2.76	2.94	—	2.9	0.005	0.76	0.0	0.08	14.26	0.01	1.641	4.34	4.82	6.2	93.7	0.0	-3.54	0.73	0.83	3.73	2.9	0.003	0.60	0.0	0.04	16.41	0.00	2.088	8.60	2.70	6.3	93.6	0.0	-0.88	0.50	0.75	0.86	3.47	51788	6194	29	63	5	61	0	logfile
✔	5iRZ	8118	2022-12-13	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.22	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	16.32	0.00	2.184	9.10	0.64	6.7	93.3	0.0	0.77	0.68	0.66	0.84	3.08	12504	1576	8	0	24	0	0	logfile
✔	6PW9	20501	2022-12-12	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	13.12	0.01	1.781	6.81	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.004	0.82	0.0	0.05	13.93	0.00	2.175	14.82	0.11	4.3	95.7	0.0	-1.17	2.50	0.73	0.75	—	8836	1075	5	0	3	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6JBJ	9791	2022-12-12	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.75	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.003	0.73	0.0	0.04	18.18	0.00	2.091	17.10	0.49	7.6	92.4	0.0	-1.82	1.20	0.64	0.82	1.09	9166	1130	4	0	2	0	0	logfile
✔	6D7W	7826	2022-12-12	2018-04-25	3.8	3.93	—	3.9	0.007	1.20	4.0	0.07	11.66	0.01	2.210	13.57	2.73	6.7	93.3	0.0	-3.65	0.58	0.77	1.57	3.9	0.003	0.72	0.0	0.04	15.55	0.00	2.184	10.61	0.74	6.1	93.9	0.0	0.32	1.35	0.59	0.77	1.29	8946	1087	5	0	1	0	0	logfile
✔	6UAN	20708	2022-12-11	2019-09-11	3.9	4.03	—	3.9	0.007	0.95	0.0	0.06	16.09	0.01	2.256	7.62	1.03	8.1	91.9	0.0	-5.36	0.76	0.80	1.99	3.9	0.003	0.76	0.0	0.04	17.07	0.00	2.227	12.92	0.64	5.3	94.7	0.0	-1.50	1.24	0.75	0.78	1.19	7685	1007	4	0	0	0	0	logfile
✔	6QNU	4609	2022-12-11	2019-02-12	3.8	3.99	—	3.9	0.004	0.91	0.0	0.06	13.91	0.01	2.324	3.68	0.61	10.0	90.0	0.0	-4.05	0.77	0.81	2.85	3.9	0.003	0.66	0.0	0.05	16.13	0.00	2.141	10.68	0.49	8.1	91.9	0.0	-2.32	1.25	0.77	0.81	2.17	7250	920	5	0	0	0	0	logfile
✔	6QNT	4608	2022-12-11	2019-02-12	3.5	3.70	—	3.7	0.004	0.85	0.0	0.05	13.95	0.01	2.329	2.96	0.15	7.7	92.3	0.0	-4.25	0.77	0.83	3.32	3.7	0.003	0.67	0.0	0.04	15.74	0.00	2.123	10.02	0.62	7.2	92.8	0.0	-2.12	0.54	0.76	0.83	3.12	5774	733	4	0	0	0	0	logfile
✘	5WPV	8883	2022-12-18	2017-08-07	3.59	3.68	—	3.7	0.006	0.90	0.0	0.05	10.97	0.01	2.329	2.80	0.18	3.7	96.3	0.0	-4.61	0.62	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14889	1816	9	0	9	0	0	logfile
✔	6H5S	0142	2022-12-21	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	10.77	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.003	0.61	0.0	0.04	15.04	0.00	2.116	8.57	0.30	3.3	96.7	0.0	-0.13	0.63	0.53	0.90	3.33	44700	5445	30	90	0	0	0	logfile
✔	5ZSU	6952	2022-12-19	2018-04-29	4.25	4.38	2.97	4.3	0.006	1.14	3.0	0.06	10.79	0.01	2.286	13.27	0.76	11.3	88.7	0.0	-4.45	0.68	0.75	—	4.3	0.004	0.81	0.0	0.05	12.37	0.00	2.145	17.66	0.00	9.1	90.9	0.0	-1.71	1.91	0.70	0.77	—	34959	4227	6	0	0	0	0	logfile
✔	6V35	21028	2022-12-19	2019-11-25	3.5	3.83	—	3.7	0.011	1.23	4.0	0.07	12.70	0.01	2.296	10.11	0.81	7.0	93.0	0.0	-3.13	0.68	0.82	2.47	3.7	0.003	0.70	0.0	0.04	14.97	0.00	2.088	13.22	0.20	4.8	95.2	0.0	-0.33	0.81	0.68	0.83	2.35	36488	4448	16	0	56	0	0	logfile

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