Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NSJ	0498	2023-04-21	2019-01-24	2.7	3.69	2.67	3.6	0.008	1.12	0.0	0.06	13.77	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.003	0.59	0.0	0.04	14.04	0.00	2.234	5.27	1.09	4.0	96.0	0.0	2.26	0.53	0.58	0.75	2.91	9096	1092	12	0	18	0	0	logfile
✔	6VK1	21223	2023-04-20	2020-01-18	3.9	3.99	—	3.9	0.003	0.59	0.0	0.04	14.77	0.00	2.245	10.65	0.13	4.4	95.6	0.0	-1.86	0.62	0.79	1.42	3.9	0.004	0.86	0.0	0.05	17.33	0.00	2.192	13.21	0.63	4.2	95.8	0.0	1.78	1.59	0.62	0.79	1.17	7259	882	2	0	0	0	0	logfile
✔	6LLE	0912	2023-04-20	2019-12-23	2.9	3.06	2.85	3.0	0.005	0.63	0.0	0.04	12.59	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.002	0.56	0.0	0.04	16.67	0.00	2.092	7.67	1.95	2.1	97.9	0.0	0.63	0.45	0.68	0.84	2.79	7916	1020	1	0	4	0	0	logfile
✔	6QSU	4629	2023-04-28	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.65	0.0	0.05	13.44	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.49	0.00	1.940	5.87	0.67	3.1	96.9	0.0	0.36	1.15	0.72	0.86	4.21	75758	9684	60	0	36	1178	0	logfile
✔	7RYZ	24749	2023-04-23	2021-08-26	4.15	3.50	—	3.4	0.008	0.95	0.0	0.05	10.77	0.01	2.225	4.30	0.24	3.4	96.6	0.0	-4.55	0.73	0.77	—	3.4	0.003	0.63	0.0	0.04	12.87	0.00	2.101	10.82	0.00	2.9	97.1	0.0	0.12	1.91	0.74	0.77	—	15742	2014	8	0	4	0	0	logfile
✔	7TFo	25878	2023-04-29	2022-01-06	4.1	3.83	—	3.8	0.006	0.74	0.0	0.05	13.26	0.01	2.118	16.68	0.21	8.9	91.1	0.0	-1.50	0.74	0.73	—	3.7	0.004	0.68	0.0	0.05	13.52	0.00	2.114	14.42	0.00	8.1	91.8	0.0	-1.20	0.73	0.74	0.76	—	17774	2283	20	0	21	0	0	logfile
✔	7WUS	32840	2023-04-20	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.275	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.80	0.0	0.05	17.38	0.00	2.113	12.74	0.50	8.3	91.6	0.1	-1.93	1.46	0.70	0.77	1.35	5450	682	2	0	0	0	0	logfile
✔	6SEF	10154	2023-04-22	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.005	0.76	0.0	0.04	28.99	0.00	2.071	16.74	0.80	2.9	97.1	0.0	0.58	0.72	0.89	0.85	1.99	11919	751	11	290	0	0	0	logfile
✔	7F8J	31489	2023-04-24	2021-07-02	3.6	3.73	3.52	3.7	0.010	1.62	0.0	0.04	18.33	0.00	2.215	7.08	1.04	5.8	94.2	0.0	0.64	0.63	0.84	2.72	3.7	0.003	1.42	0.0	0.04	15.04	0.00	2.219	8.57	0.20	5.7	94.3	0.0	1.22	1.22	0.61	0.85	2.70	18984	2240	14	0	42	0	0	logfile
✔	7PDH	13338	2023-04-20	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.32	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.70	0.0	0.04	16.46	0.00	2.175	14.77	0.62	6.3	93.7	0.0	-0.65	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7TNJ	26011	2023-04-24	2022-01-21	4.02	3.16	—	3.3	0.005	0.94	0.0	0.05	10.53	0.01	2.246	3.87	0.20	3.6	96.4	0.0	-4.89	0.65	0.72	—	3.1	0.003	0.64	0.0	0.04	13.18	0.00	2.184	10.71	0.05	3.2	96.8	0.0	0.63	1.32	0.66	0.73	—	18810	2402	8	0	4	0	0	logfile
✔	7AAP	11692	2023-04-21	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.42	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.003	0.53	0.0	0.04	14.64	0.00	2.166	5.69	0.71	1.8	98.2	0.0	0.36	0.82	0.80	0.90	4.24	9446	1120	9	21	7	0	0	logfile
✔	7Sii	25142	2023-04-25	2021-10-14	3.45	3.63	—	3.6	0.008	0.74	0.0	0.03	13.14	0.00	2.220	5.25	2.21	2.9	97.1	0.0	2.94	0.64	0.79	2.61	3.6	0.004	0.55	0.0	0.03	15.31	0.00	2.106	7.44	0.46	3.0	97.0	0.0	2.33	0.51	0.66	0.83	1.88	20484	1286	8	0	4	0	10184	logfile
✔	7W4Q	32312	2023-04-23	2021-11-28	3.3	3.35	—	3.3	0.006	0.78	1.0	0.04	17.60	0.01	2.115	9.03	0.36	4.0	96.0	0.0	0.93	0.78	0.86	2.38	3.3	0.004	0.60	0.0	0.04	17.20	0.00	2.100	8.81	0.37	4.4	95.6	0.0	0.75	0.33	0.79	0.87	2.44	66581	8140	66	0	37	0	0	logfile
✔	7USE	26734	2023-04-26	2022-04-25	3.0	3.34	2.99	3.3	0.005	0.79	0.0	0.05	13.68	0.00	1.840	6.47	0.19	1.5	98.5	0.0	3.40	0.87	0.78	2.35	3.2	0.004	0.80	0.0	0.04	16.74	0.00	1.950	9.91	1.13	2.3	97.7	0.0	1.79	2.27	0.87	0.84	1.78	23913	2954	9	0	4	0	0	logfile
✘	6RKV	4912	2023-04-23	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	7YHQ	33836	2023-04-20	2022-07-14	3.9	3.34	3.84	3.3	0.005	0.91	0.0	0.06	23.63	0.01	2.249	15.40	2.00	8.6	91.4	0.0	-0.58	0.74	0.72	0.99	3.2	0.003	0.69	0.0	0.04	23.59	0.00	2.143	16.30	0.86	9.1	90.9	0.0	-0.74	0.65	0.74	0.74	0.99	4065	393	4	42	2	0	0	logfile
✔	6SEE	10153	2023-04-22	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.63	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.70	0.0	0.04	28.16	0.00	2.048	16.59	0.00	2.4	97.6	0.0	0.56	0.74	0.87	0.83	—	11949	756	11	290	0	0	0	logfile
✔	6PM3	20385	2023-04-23	2019-07-01	3.0	3.08	—	3.0	0.009	1.06	0.0	0.06	9.20	0.01	2.322	4.53	0.00	5.0	95.0	0.0	-4.50	0.71	0.88	4.96	3.0	0.002	0.61	0.0	0.04	15.57	0.00	2.165	9.02	2.02	3.9	96.1	0.0	0.70	0.71	0.72	0.91	4.27	14120	1725	15	0	15	0	0	logfile
✔	7U2B	26311	2023-04-20	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	14.98	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.62	0.0	0.04	15.43	0.00	2.153	10.28	0.00	1.8	98.2	0.0	0.53	1.44	0.78	0.80	—	7316	780	5	53	2	0	0	logfile

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