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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6H5Q | 0141 | 2022-12-22 | 2018-07-25 | 3.3 | 3.43 | — | 3.4 | 0.010 | 1.14 | 0.0 | 0.06 | 11.79 | 0.01 | 1.628 | 11.72 | 1.54 | 4.0 | 96.0 | 0.0 | -4.31 | 0.46 | 0.87 | 4.00 | 3.4 | 0.006 | 0.72 | 0.0 | 0.04 | 14.91 | 0.00 | 2.122 | 11.78 | 0.64 | 3.9 | 96.1 | 0.0 | 0.25 | 0.61 | 0.49 | 0.90 | 2.87 | 46650 | 5715 | 30 | 90 | 0 | 0 | 0 | logfile |
✔ | 6RVX | 10016 | 2022-12-12 | 2019-06-03 | 3.61 | 3.75 | 3.53 | 3.8 | 0.006 | 0.99 | 0.0 | 0.05 | 14.07 | 0.01 | 2.261 | 5.00 | 0.29 | 8.0 | 92.0 | 0.0 | -5.46 | 0.65 | 0.80 | 1.54 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.26 | 0.00 | 2.181 | 9.35 | 0.39 | 4.5 | 95.5 | 0.0 | -0.61 | 1.15 | 0.63 | 0.79 | 0.95 | 9627 | 1290 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DW0 | 8922 | 2022-12-12 | 2018-06-26 | 3.8 | 3.44 | — | 4.0 | 0.005 | 0.93 | 0.0 | 0.05 | 11.05 | 0.01 | 2.282 | 5.00 | 0.08 | 5.7 | 94.3 | 0.0 | -3.98 | 0.46 | 0.73 | 1.86 | 4.0 | 0.004 | 0.96 | 0.0 | 0.05 | 15.94 | 0.00 | 2.060 | 21.37 | 0.74 | 6.1 | 93.9 | 0.0 | -1.27 | 1.62 | 0.49 | 0.75 | 1.94 | 11929 | 1529 | 13 | 0 | 24 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2022-12-14 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.013 | 0.89 | 0.0 | 0.06 | 14.62 | 0.01 | 2.057 | 2.30 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 16.27 | 0.00 | 2.238 | 6.90 | 0.07 | 5.0 | 95.0 | 0.0 | -1.43 | 0.57 | 0.70 | 0.84 | 3.11 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 6S3K | 10092 | 2022-12-18 | 2019-06-25 | 3.7 | 4.09 | 3.85 | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 15.38 | 0.01 | 2.276 | 5.98 | 0.62 | 10.7 | 89.3 | 0.0 | -4.54 | 0.57 | 0.75 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1146 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6GTC | 0061 | 2022-12-12 | 2018-06-18 | 3.91 | 3.85 | — | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 15.72 | 0.01 | 2.275 | 5.90 | 0.86 | 8.8 | 91.2 | 0.0 | -5.69 | 0.70 | 0.67 | 1.97 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 18.48 | 0.00 | 2.112 | 14.14 | 0.43 | 7.6 | 92.4 | 0.0 | -2.87 | 1.13 | 0.71 | 0.70 | 1.53 | 11931 | 1280 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2022-12-11 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.003 | 0.86 | 0.0 | 0.04 | 15.83 | 0.00 | 2.180 | 13.35 | 0.12 | 10.6 | 89.4 | 0.0 | -1.13 | 2.15 | 0.65 | 0.79 | 1.41 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RFL | 4868 | 2022-12-11 | 2019-04-15 | 2.76 | 2.94 | — | 2.9 | 0.005 | 0.76 | 0.0 | 0.08 | 14.26 | 0.01 | 1.641 | 4.34 | 4.82 | 6.2 | 93.7 | 0.0 | -3.54 | 0.73 | 0.83 | 3.73 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.41 | 0.00 | 2.088 | 8.60 | 2.70 | 6.3 | 93.6 | 0.0 | -0.88 | 0.50 | 0.75 | 0.86 | 3.47 | 51788 | 6194 | 29 | 63 | 5 | 61 | 0 | logfile |
✔ | 5iRZ | 8118 | 2022-12-13 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 16.22 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.32 | 0.00 | 2.184 | 9.10 | 0.64 | 6.7 | 93.3 | 0.0 | 0.77 | 0.68 | 0.66 | 0.84 | 3.08 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 6PW9 | 20501 | 2022-12-12 | 2019-07-22 | 4.03 | 4.12 | — | 4.1 | 0.007 | 1.23 | 0.0 | 0.24 | 13.12 | 0.01 | 1.781 | 6.81 | 1.81 | 4.4 | 95.6 | 0.0 | -4.47 | 0.71 | 0.70 | — | 4.1 | 0.004 | 0.82 | 0.0 | 0.05 | 13.93 | 0.00 | 2.175 | 14.82 | 0.11 | 4.3 | 95.7 | 0.0 | -1.17 | 2.50 | 0.73 | 0.75 | — | 8836 | 1075 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-12-11 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2022-12-12 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.75 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 18.18 | 0.00 | 2.091 | 17.10 | 0.49 | 7.6 | 92.4 | 0.0 | -1.82 | 1.20 | 0.64 | 0.82 | 1.09 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6D7W | 7826 | 2022-12-12 | 2018-04-25 | 3.8 | 3.93 | — | 3.9 | 0.007 | 1.20 | 4.0 | 0.07 | 11.66 | 0.01 | 2.210 | 13.57 | 2.73 | 6.7 | 93.3 | 0.0 | -3.65 | 0.58 | 0.77 | 1.57 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.55 | 0.00 | 2.184 | 10.61 | 0.74 | 6.1 | 93.9 | 0.0 | 0.32 | 1.35 | 0.59 | 0.77 | 1.29 | 8946 | 1087 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UAN | 20708 | 2022-12-11 | 2019-09-11 | 3.9 | 4.03 | — | 3.9 | 0.007 | 0.95 | 0.0 | 0.06 | 16.09 | 0.01 | 2.256 | 7.62 | 1.03 | 8.1 | 91.9 | 0.0 | -5.36 | 0.76 | 0.80 | 1.99 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 17.07 | 0.00 | 2.227 | 12.92 | 0.64 | 5.3 | 94.7 | 0.0 | -1.50 | 1.24 | 0.75 | 0.78 | 1.19 | 7685 | 1007 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QNU | 4609 | 2022-12-11 | 2019-02-12 | 3.8 | 3.99 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.06 | 13.91 | 0.01 | 2.324 | 3.68 | 0.61 | 10.0 | 90.0 | 0.0 | -4.05 | 0.77 | 0.81 | 2.85 | 3.9 | 0.003 | 0.66 | 0.0 | 0.05 | 16.13 | 0.00 | 2.141 | 10.68 | 0.49 | 8.1 | 91.9 | 0.0 | -2.32 | 1.25 | 0.77 | 0.81 | 2.17 | 7250 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QNT | 4608 | 2022-12-11 | 2019-02-12 | 3.5 | 3.70 | — | 3.7 | 0.004 | 0.85 | 0.0 | 0.05 | 13.95 | 0.01 | 2.329 | 2.96 | 0.15 | 7.7 | 92.3 | 0.0 | -4.25 | 0.77 | 0.83 | 3.32 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.74 | 0.00 | 2.123 | 10.02 | 0.62 | 7.2 | 92.8 | 0.0 | -2.12 | 0.54 | 0.76 | 0.83 | 3.12 | 5774 | 733 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5WPV | 8883 | 2022-12-18 | 2017-08-07 | 3.59 | 3.68 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.05 | 10.97 | 0.01 | 2.329 | 2.80 | 0.18 | 3.7 | 96.3 | 0.0 | -4.61 | 0.62 | 0.81 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14889 | 1816 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 6H5S | 0142 | 2022-12-21 | 2018-07-25 | 3.3 | 3.45 | — | 3.4 | 0.010 | 1.12 | 0.0 | 0.06 | 10.77 | 0.01 | 1.817 | 7.18 | 0.65 | 7.3 | 92.7 | 0.0 | -5.39 | 0.51 | 0.88 | 4.96 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.04 | 0.00 | 2.116 | 8.57 | 0.30 | 3.3 | 96.7 | 0.0 | -0.13 | 0.63 | 0.53 | 0.90 | 3.33 | 44700 | 5445 | 30 | 90 | 0 | 0 | 0 | logfile |
✔ | 5ZSU | 6952 | 2022-12-19 | 2018-04-29 | 4.25 | 4.38 | 2.97 | 4.3 | 0.006 | 1.14 | 3.0 | 0.06 | 10.79 | 0.01 | 2.286 | 13.27 | 0.76 | 11.3 | 88.7 | 0.0 | -4.45 | 0.68 | 0.75 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 12.37 | 0.00 | 2.145 | 17.66 | 0.00 | 9.1 | 90.9 | 0.0 | -1.71 | 1.91 | 0.70 | 0.77 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V35 | 21028 | 2022-12-19 | 2019-11-25 | 3.5 | 3.83 | — | 3.7 | 0.011 | 1.23 | 4.0 | 0.07 | 12.70 | 0.01 | 2.296 | 10.11 | 0.81 | 7.0 | 93.0 | 0.0 | -3.13 | 0.68 | 0.82 | 2.47 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 14.97 | 0.00 | 2.088 | 13.22 | 0.20 | 4.8 | 95.2 | 0.0 | -0.33 | 0.81 | 0.68 | 0.83 | 2.35 | 36488 | 4448 | 16 | 0 | 56 | 0 | 0 | logfile |