Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U24	26307	2023-07-10	2022-02-23	3.58	3.66	—	3.6	0.002	0.50	0.0	0.04	17.03	0.00	2.254	5.00	0.11	4.5	95.5	0.0	-0.81	0.54	0.79	2.38	3.6	0.005	0.66	0.0	0.05	16.65	0.00	2.061	9.11	0.51	5.3	94.7	0.0	0.26	0.52	0.54	0.80	2.09	20651	2770	10	0	25	0	0	logfile
✔	7ZQP	14873	2023-07-09	2022-05-02	3.6	2.97	3.42	3.0	0.003	0.48	0.0	0.04	13.61	0.00	2.048	5.00	0.00	3.8	96.2	0.0	-0.86	0.64	0.80	2.81	3.0	0.005	0.59	0.0	0.05	15.62	0.00	2.125	9.22	0.30	4.7	95.3	0.0	-0.85	0.43	0.65	0.80	2.59	18315	2289	6	0	0	0	0	logfile
✔	6NT9	0506	2023-07-05	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.003	0.50	0.0	0.04	14.15	0.00	2.226	4.50	0.18	1.8	98.2	0.0	2.60	0.58	0.83	0.88	3.12	9906	1228	4	0	0	0	0	logfile
✔	6Y9X	10740	2023-07-09	2020-03-10	4.4	4.70	4.26	4.4	0.012	1.07	3.0	0.11	13.05	0.01	1.344	12.07	0.45	2.0	98.0	0.0	-0.96	0.69	0.74	—	4.4	0.004	0.83	0.0	0.05	13.72	0.01	2.099	20.44	0.05	3.1	96.9	0.0	-0.34	1.79	0.73	0.78	—	18418	2364	13	0	0	0	0	logfile
✔	6VJY	21220	2023-07-04	2020-01-18	4.3	4.47	—	4.3	0.003	0.64	0.0	0.04	14.40	0.00	2.223	12.37	0.13	4.1	95.9	0.0	-1.62	0.70	0.81	—	4.3	0.003	0.68	0.0	0.04	14.42	0.00	2.149	10.16	0.13	4.5	95.5	0.0	1.68	0.86	0.70	0.80	—	7266	883	2	0	0	0	0	logfile
✔	6T25	10367	2023-07-07	2019-10-07	3.6	3.57	3.47	3.7	0.018	1.59	0.0	0.09	12.03	0.01	1.335	4.64	0.32	2.5	97.5	0.0	-0.96	0.67	0.81	3.25	3.6	0.003	0.70	0.0	0.04	16.01	0.00	2.026	8.58	0.32	1.6	98.4	0.0	0.53	1.81	0.65	0.82	2.14	14590	1840	15	0	15	0	0	logfile
✔	6N7V	0364	2023-07-06	2018-11-28	3.8	4.02	—	3.8	0.005	0.89	0.0	0.05	14.42	0.00	2.119	3.58	0.15	3.8	96.2	0.0	-3.41	0.76	0.74	1.21	3.8	0.003	0.68	0.0	0.04	16.51	0.00	1.834	12.45	0.30	4.2	95.8	0.0	-0.67	0.95	0.78	0.77	1.06	12861	1606	12	16	10	0	0	logfile
✔	7ZDH	14648	2023-07-08	2022-03-29	3.46	3.63	—	3.4	0.005	0.77	0.0	1.03	15.81	0.01	2.238	4.73	0.28	3.1	96.9	0.0	-0.39	0.92	0.89	2.07	3.4	0.008	1.56	0.0	0.31	16.07	0.00	2.099	8.02	0.28	3.1	96.9	0.0	0.92	0.28	0.91	0.88	2.16	67219	8227	66	0	35	0	0	logfile
✔	7ARi	11883	2023-07-05	2020-10-25	3.4	3.64	—	3.6	0.003	0.78	0.0	0.05	13.73	0.00	2.339	3.87	0.68	4.4	95.6	0.0	-5.94	0.64	0.67	0.67	3.6	0.003	0.73	0.0	0.04	16.43	0.00	2.122	11.86	0.49	5.6	94.4	0.0	-2.02	0.92	0.71	0.79	0.87	9538	1246	4	0	0	0	0	logfile
✔	7BWD	30232	2023-07-10	2020-04-14	4.32	4.37	—	4.3	0.009	0.93	0.0	0.05	26.44	0.01	1.348	6.94	2.98	6.3	93.7	0.0	-5.07	0.80	0.80	—	4.3	0.007	0.75	0.0	0.04	26.14	0.00	2.005	16.20	0.00	7.1	92.9	0.0	-1.81	1.68	0.80	0.79	—	16042	1257	14	292	0	0	0	logfile
✔	6LVF	0992	2023-07-06	2020-02-02	3.7	3.81	—	3.7	0.010	1.23	0.0	0.06	12.77	0.01	2.216	6.98	0.16	8.3	91.7	0.0	-4.32	0.68	0.78	1.66	3.7	0.003	0.67	0.0	0.04	14.81	0.00	2.213	11.95	0.24	5.9	94.1	0.0	0.11	1.21	0.67	0.77	0.89	12380	1586	4	0	6	0	0	logfile
✔	6XTB	10618	2023-07-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7ZDP	14664	2023-07-07	2022-03-29	3.88	4.02	—	3.8	0.004	0.84	0.0	1.03	16.29	0.01	1.591	5.98	0.24	3.2	96.8	0.0	-0.67	0.91	0.85	1.51	3.7	0.008	1.61	0.0	0.31	16.51	0.00	1.982	10.80	0.35	4.2	95.8	0.0	0.58	0.35	0.89	0.83	1.56	65835	8160	56	0	17	0	0	logfile
✔	6WYK	21967	2023-07-03	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.86	0.0	0.05	16.17	0.00	2.173	13.51	0.31	2.9	97.1	0.0	1.58	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	7ZC5	14620	2023-07-16	2022-03-25	3.0	2.69	—	2.6	0.007	0.85	0.0	1.48	15.51	0.01	2.216	5.43	1.96	3.0	97.0	0.0	-0.62	0.89	0.87	3.49	2.7	0.012	2.21	0.0	0.45	15.99	0.00	2.065	9.53	2.51	2.7	97.3	0.0	1.05	1.10	0.89	0.86	3.35	36692	4645	24	0	23	0	0	logfile
✔	7D1Z	30551	2023-07-07	2020-09-15	3.15	3.36	—	3.2	0.007	0.73	0.0	0.06	28.14	0.00	2.118	8.89	0.00	4.6	95.4	0.0	-2.13	0.82	0.86	2.63	3.2	0.004	0.66	0.0	0.05	28.32	0.00	2.112	8.98	0.52	4.1	95.9	0.0	1.76	0.44	0.83	0.87	2.66	13327	929	11	290	0	0	0	logfile
✔	7N5D	24186	2023-07-10	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	7K8A	22724	2023-07-06	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7XFH	33172	2023-07-06	2022-04-01	2.9	2.66	2.93	2.9	0.006	0.77	0.0	0.05	26.37	0.01	2.285	2.77	0.00	3.4	96.6	0.0	-1.59	0.70	0.76	3.59	2.8	0.003	0.57	0.0	0.04	27.59	0.00	2.163	7.98	2.66	2.5	97.5	0.0	0.75	1.91	0.77	0.84	2.90	12969	957	11	264	0	0	0	logfile
✔	7JL0	22368	2023-07-06	2020-07-29	4.3	3.67	—	4.0	0.008	1.40	1.0	0.05	14.11	0.00	1.860	13.62	0.14	6.6	93.4	0.0	-1.52	0.75	0.77	—	4.1	0.003	0.93	0.0	0.04	14.14	0.00	1.822	11.82	0.00	4.8	95.2	0.0	-0.07	2.52	0.77	0.80	—	7354	842	5	28	4	0	0	logfile

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