Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X8M	22094	2021-08-11	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.004	0.66	0.0	0.05	16.02	0.00	2.125	4.32	0.79	3.7	96.3	0.0	0.01	0.62	0.76	0.87	5.71	133440	16800	60	0	0	0	0	logfile
✘	5A1A	2984	2021-08-10	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33696	4088	12	0	20	776	0	logfile
✔	6PJ6	20353	2021-08-18	2019-06-27	2.2	2.48	—	2.5	0.011	1.07	14.0	0.06	15.16	0.02	1.227	5.23	2.25	5.6	94.4	0.1	-2.65	0.62	0.84	4.58	2.5	0.007	0.78	0.0	0.05	15.83	0.01	1.021	7.99	2.99	5.8	94.2	0.0	-1.06	1.30	0.64	0.86	4.41	154542	3356	67	3016	187	3897	59624	logfile
✔	7LXY	23579	2021-08-10	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.22	0.0	0.07	11.01	0.01	2.182	1.39	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.62	0.0	0.05	14.31	0.00	2.027	5.04	1.33	2.0	98.0	0.0	0.98	0.53	0.77	0.84	4.52	33987	4446	36	0	69	729	0	logfile
✔	7DRT	30827	2021-08-07	2020-12-29	2.2	2.32	—	2.3	0.014	1.56	9.0	0.25	13.25	0.01	2.064	5.73	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.87	0.0	0.08	17.27	0.00	2.250	11.61	5.45	5.3	94.6	0.1	-0.32	1.14	0.62	0.75	2.77	6849	830	7	0	7	10	0	logfile
✔	6R7G	4740	2021-08-09	2019-03-28	2.2	2.28	—	2.3	0.006	0.85	0.0	0.05	13.63	0.01	1.880	1.89	3.05	4.3	95.7	0.0	-2.46	0.58	0.88	6.31	2.3	0.002	0.53	0.0	0.04	14.80	0.00	2.216	4.37	0.70	4.1	95.9	0.0	1.91	0.92	0.57	0.88	5.91	22012	2717	27	69	0	92	0	logfile
✔	6M3X	30073	2021-08-09	2020-03-04	2.24	2.31	—	2.3	0.006	0.84	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.89	7.35	2.3	0.004	0.68	0.0	0.05	16.87	0.00	2.274	5.73	0.76	3.2	96.8	0.0	0.28	0.41	0.78	0.90	6.58	62387	7440	72	0	24	2243	0	logfile
✘	7DDE	30652	2021-08-11	2020-10-28	2.26	3.31	—	3.0	0.009	1.14	10.0	0.07	14.34	0.01	2.042	8.37	1.16	5.0	94.9	0.0	-2.84	0.71	0.85	3.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51171	6300	36	0	48	1911	0	logfile
✘	7M3M	23657	2021-08-31	2021-03-18	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	258518	32452	61	0	0	0	0	logfile
✔	7RK8	24494	2021-08-25	2021-07-22	2.27	2.34	—	2.3	0.004	0.61	0.0	0.05	14.03	0.00	2.161	3.94	0.00	1.9	98.1	0.0	-0.56	0.76	0.89	5.98	2.3	0.004	0.63	0.0	0.05	15.82	0.00	2.077	3.53	0.94	2.6	97.4	0.0	-0.75	0.33	0.73	0.88	5.80	246720	31020	60	0	0	0	0	logfile
✔	7N8H	24236	2021-08-10	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.59	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.006	0.78	0.0	0.05	14.39	0.01	1.901	4.82	1.40	2.8	97.2	0.0	0.65	0.99	0.76	0.85	4.83	32921	4356	36	0	60	771	0	logfile
✔	7MBQ	23741	2021-08-10	2021-04-01	2.3	3.00	—	2.6	0.019	0.71	0.0	0.09	15.29	0.01	2.246	6.68	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.6	0.003	0.56	0.0	0.04	15.37	0.00	2.284	6.45	1.73	2.8	97.2	0.0	2.30	0.38	0.78	0.92	3.55	30616	3984	12	0	20	16	0	logfile
✔	6i5A	4413	2021-08-07	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.57	0.0	0.04	16.09	0.00	2.335	3.77	1.48	1.3	98.7	0.0	2.26	1.22	0.30	0.87	4.44	1206	153	1	0	0	0	0	logfile
✔	6UVA	20906	2021-08-07	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.004	0.70	0.0	0.05	18.44	0.00	2.149	9.40	2.88	4.7	95.3	0.0	0.04	1.32	0.66	0.78	3.01	9561	1199	7	0	0	0	0	logfile
✔	6WZG	21972	2021-08-07	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.80	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.62	0.0	0.04	16.24	0.00	2.102	5.66	1.54	2.1	97.9	0.0	1.54	0.99	0.73	0.86	4.87	8939	1165	6	0	0	0	0	logfile
✔	6Li9	0903	2021-08-08	2019-12-10	2.3	2.38	—	2.4	0.007	1.00	0.0	0.07	13.94	0.01	2.265	2.26	0.21	5.0	95.0	0.0	-4.31	0.63	0.75	4.03	2.4	0.008	0.92	0.0	0.05	16.42	0.00	2.142	6.60	1.74	4.2	95.8	0.0	0.12	2.48	0.73	0.85	3.67	17988	2164	22	0	26	246	0	logfile
✔	6SK0	10219	2021-08-07	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.70	0.0	0.05	17.22	0.00	2.142	10.94	0.81	3.9	96.1	0.0	-1.31	1.50	0.79	0.89	6.82	5826	792	3	0	0	0	0	logfile
✔	5FTJ	3295	2021-08-10	2016-01-14	2.3	2.04	—	2.0	0.010	1.36	0.0	0.18	14.83	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.005	0.85	0.0	0.05	17.99	0.01	2.121	14.14	2.36	6.5	93.3	0.1	-0.59	1.25	0.47	0.68	1.50	34602	4338	18	0	18	120	0	logfile
✔	6KQ4	0750	2021-08-09	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.60	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.74	1.0	0.13	15.78	0.00	1.998	4.93	0.31	3.9	96.1	0.0	1.30	0.79	0.86	0.90	4.23	62206	3936	24	0	24	0	31222	logfile
✔	6KPK	0749	2021-08-09	2019-08-15	2.3	3.44	—	3.0	0.006	0.70	0.0	0.06	12.55	0.00	2.127	4.74	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.0	0.005	0.74	1.0	0.13	14.32	0.00	1.952	4.79	0.81	3.5	96.5	0.0	1.00	0.77	0.85	0.90	4.24	62209	3936	24	0	24	0	31225	logfile

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