Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZYV	15027	2023-02-22	2022-05-25	2.13	2.84	2.17	2.6	0.007	0.70	0.0	0.05	18.57	0.01	1.927	11.83	2.20	3.9	96.1	0.0	0.99	0.78	0.90	3.60	2.6	0.003	0.59	0.0	0.04	17.78	0.00	2.186	3.85	2.08	3.4	96.6	0.0	1.50	0.39	0.77	0.90	2.95	16452	1946	29	0	32	0	0	logfile
✔	7RTB	24680	2023-02-18	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	17.07	0.00	2.260	5.43	2.77	2.7	97.3	0.0	1.12	0.68	0.68	0.82	3.99	8972	1169	7	0	0	1	0	logfile
✔	8A2Z	15109	2023-02-21	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.59	0.0	0.04	15.50	0.00	2.041	4.24	0.52	1.7	98.3	0.0	1.11	1.46	0.74	0.89	5.98	15060	1830	15	0	10	570	0	logfile
✔	8A2Y	15108	2023-02-21	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	7ZZ6	15036	2023-02-18	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.004	0.61	0.0	0.04	17.09	0.00	1.999	8.27	3.14	3.0	97.0	0.0	0.69	0.24	0.93	0.92	4.82	8257	1017	6	0	6	157	0	logfile
✔	8DLW	27518	2023-02-27	2022-07-08	2.16	3.12	2.26	2.6	0.006	1.02	0.0	0.06	10.93	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.64	0.0	0.04	13.64	0.00	2.160	6.90	1.16	2.6	97.4	0.0	0.95	2.12	0.88	0.89	4.07	30267	3768	33	0	78	0	0	logfile
✔	6KQK	0753	2023-02-24	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.49	0.00	1.782	9.61	0.69	4.1	95.9	0.0	0.23	0.79	0.82	0.86	4.20	63373	3936	24	0	48	0	31225	logfile
✔	7UZQ	26916	2023-02-23	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.54	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.27	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	8A2R	15104	2023-02-21	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	7MXY	24076	2023-02-24	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.008	0.70	0.0	0.04	18.27	0.00	1.942	15.77	5.36	4.4	95.6	0.0	0.16	1.13	0.53	0.70	2.51	22265	1406	12	0	5	2	11129	logfile
✔	7UTD	26767	2023-02-21	2022-04-26	2.19	3.00	2.25	2.5	0.060	2.36	28.0	1.00	15.03	0.02	1.964	8.43	1.36	2.2	97.7	0.1	-0.03	0.71	0.61	3.58	2.6	0.005	1.93	8.0	0.08	15.64	0.00	1.523	16.31	1.27	2.9	97.1	0.0	0.37	1.33	0.88	0.85	3.78	54200	6908	36	0	64	0	0	logfile
✔	6R7G	4740	2023-02-24	2019-03-28	2.2	2.28	—	2.3	0.006	0.85	0.0	0.05	13.63	0.01	1.880	1.89	3.05	4.3	95.7	0.0	-2.46	0.58	0.88	6.31	2.3	0.003	0.61	0.0	0.04	14.57	0.00	2.192	4.82	0.66	4.5	95.5	0.0	1.60	0.91	0.58	0.90	6.19	22012	2717	27	69	0	92	0	logfile
✘	7W9K	32368	2023-02-21	2021-12-09	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14933	1705	9	0	43	9	0	logfile
✔	7SNH	25226	2023-02-21	2021-10-28	2.2	2.26	—	2.2	0.006	0.75	0.0	0.05	19.52	0.01	2.213	6.69	1.32	1.7	98.3	0.0	0.45	0.76	0.86	4.93	2.2	0.004	0.59	0.0	0.04	18.78	0.01	2.187	7.08	1.98	2.0	98.0	0.0	0.43	0.33	0.78	0.89	4.85	15828	1904	8	0	8	0	0	logfile
✔	8GVK	32099	2023-02-17	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	7P6B	13224	2023-02-17	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	7YAT	33719	2023-02-17	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.81	0.0	0.05	15.27	0.01	2.285	11.34	0.00	4.5	95.5	0.0	-4.89	0.41	0.64	0.91	7.20	4129	600	45	0	0	25	0	logfile
✔	7DRT	30827	2023-02-18	2020-12-29	2.2	2.32	—	2.3	0.011	1.32	9.0	0.09	13.07	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.69	0.0	0.04	17.23	0.01	2.243	10.80	5.31	6.3	93.6	0.1	-0.40	1.11	0.64	0.77	2.65	6849	830	7	0	7	10	0	logfile
✔	7QER	13938	2023-02-23	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.56	0.0	0.04	14.85	0.00	2.246	2.38	1.90	1.2	98.8	0.0	3.52	1.24	0.84	0.89	3.41	19097	2244	36	0	60	305	0	logfile
✔	6WZ5	21970	2023-02-20	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.31	0.00	2.156	6.07	1.08	1.7	98.3	0.0	2.65	0.90	0.87	0.89	3.95	12443	774	10	306	0	0	0	logfile

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