Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U16	26279	2022-11-29	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.37	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	6YN5	10849	2022-11-29	2020-04-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56994	7110	10	0	0	0	0	logfile
✔	8CSV	26972	2022-11-29	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	3.83	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.003	0.52	0.0	0.04	15.83	0.00	2.176	6.42	0.26	2.7	97.1	0.2	2.09	0.60	0.58	0.88	4.74	3712	483	3	0	0	48	0	logfile
✔	6MST	9232	2022-11-29	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5172	648	12	0	0	0	0	logfile
✔	7QEU	13941	2022-11-29	2021-12-03	2.7	3.39	—	3.0	0.009	0.68	0.0	0.04	13.62	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.59	0.0	0.04	15.00	0.00	2.243	3.99	1.24	2.3	97.7	0.0	3.28	0.49	0.78	0.87	2.55	3002	359	6	0	6	7	0	logfile
✔	7V0M	26944	2022-11-29	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	4.65	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.48	0.0	0.04	18.25	0.00	2.193	6.29	2.58	3.3	96.7	0.0	1.93	0.24	0.56	0.88	4.32	3724	483	4	0	0	60	0	logfile
✔	8CSY	26975	2022-11-29	2022-05-13	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4638	584	4	0	0	19	0	logfile
✔	7QiG	13989	2022-11-29	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.69	0.00	2.142	6.24	0.87	10.0	90.0	0.0	-4.21	0.62	0.38	0.87	5.81	3213	396	3	0	0	0	0	logfile
✔	7P65	13218	2022-11-29	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.48	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.007	0.70	0.0	0.05	15.71	0.00	2.309	5.67	1.26	3.3	96.7	0.0	-2.84	0.47	0.48	0.88	5.48	4145	550	5	0	0	0	0	logfile
✔	6LNi	0931	2022-11-29	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4920	600	10	0	0	0	0	logfile
✔	7QWM	14189	2022-11-29	2022-01-25	2.76	2.21	2.43	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.62	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.004	0.70	0.0	0.05	18.21	0.00	2.103	9.84	0.53	6.8	93.2	0.0	-2.77	0.60	0.38	0.82	6.27	3255	405	3	0	0	0	0	logfile
✔	7LXW	23577	2022-11-29	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.003	0.60	0.0	0.05	15.32	0.00	2.264	9.35	1.90	1.7	98.3	0.0	0.52	0.70	0.71	0.82	5.23	2524	317	5	0	5	0	0	logfile
✔	7BX7	30235	2022-11-29	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6oUC	20202	2022-11-29	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.004	0.63	0.0	0.05	14.84	0.01	2.172	3.88	1.68	3.5	96.5	0.0	-0.43	1.18	0.64	0.90	3.76	3899	483	1	0	1	124	0	logfile
✔	7UiU	26553	2022-11-29	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	4.19	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.95	0.0	0.04	17.47	0.00	2.262	11.74	1.67	6.0	94.0	0.0	-1.79	1.38	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	6oSJ	20183	2022-11-29	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.52	0.80	4.30	4210	610	10	0	0	0	0	logfile
✔	6HU7	0273	2022-11-29	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.36	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4890	609	7	0	0	0	0	logfile
✔	7QKK	14045	2022-11-29	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.69	0.0	0.05	17.34	0.00	2.154	11.04	1.52	6.3	93.7	0.0	-3.55	2.17	0.34	0.78	3.12	3537	228	3	0	0	0	1803	logfile
✔	7UL4	26591	2022-11-29	2022-04-03	2.8	2.99	2.86	3.0	0.010	1.08	0.0	0.06	12.51	0.01	2.222	2.52	0.00	2.1	97.9	0.0	1.05	0.65	0.80	4.17	3.1	0.003	0.59	0.0	0.04	14.90	0.00	2.270	2.73	1.38	1.2	98.8	0.0	2.14	0.42	0.61	0.81	3.26	2524	351	3	0	1	4	0	logfile
✔	6MRT	9212	2022-11-29	2018-10-15	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26868	3420	12	0	0	0	0	logfile

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