Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7CoY	30420	2021-12-01	2020-08-05	2.5	2.41	2.54	2.5	0.017	1.68	5.0	0.10	14.30	0.01	1.106	11.55	0.90	5.6	94.3	0.1	-3.23	0.57	0.80	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57966	6096	66	0	279	84	0	logfile
✔	7P6C	13225	2021-12-01	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.72	0.0	0.05	17.16	0.00	2.203	5.95	0.86	3.5	96.5	0.0	-2.59	0.96	0.44	0.89	7.28	8120	1080	10	0	0	0	0	logfile
✔	7D6V	30594	2021-12-01	2020-10-02	2.53	2.74	—	2.7	0.031	1.56	2.0	0.50	14.77	0.01	2.186	9.51	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.013	1.22	1.0	0.06	16.25	0.01	1.800	7.67	1.55	7.9	92.0	0.1	-0.22	0.33	0.72	0.89	4.03	8793	1104	6	0	7	0	0	logfile
✔	7JZ6	22530	2021-12-02	2020-09-01	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20842	2646	12	0	4	18	0	logfile
✔	7S8M	24897	2021-12-01	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.45	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.56	0.0	0.04	15.00	0.00	2.213	6.39	1.95	4.2	95.8	0.0	1.25	0.33	0.80	0.82	3.88	8346	1102	6	0	0	0	0	logfile
✘	7CUB	30471	2021-12-01	2020-08-22	2.55	2.79	—	2.7	0.008	0.85	0.0	0.05	14.60	0.01	1.245	4.03	4.63	3.8	95.9	0.3	-3.84	0.73	0.89	4.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9842	1199	7	0	9	13	0	logfile
✔	6TH6	10503	2021-12-01	2019-11-18	2.55	2.57	—	2.6	0.010	0.95	2.0	0.06	15.77	0.03	0.662	5.11	0.03	7.5	92.5	0.0	-2.85	0.76	0.85	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	161508	7742	119	4518	16	2129	0	logfile
✔	7JZ3	22529	2021-12-01	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.50	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.50	0.66	1.40	8142	1038	3	0	0	0	0	logfile
✔	7D4F	30572	2021-12-01	2020-09-23	2.57	2.76	—	2.7	0.011	0.98	0.0	0.06	13.80	0.01	1.326	5.95	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.51	0.0	0.04	16.07	0.00	2.216	5.79	1.81	1.7	98.3	0.0	0.46	0.44	0.75	0.88	3.47	9534	1181	4	0	4	0	0	logfile
✔	7S8o	24899	2021-12-01	2021-09-18	2.58	2.12	2.59	1.9	0.008	0.79	0.0	0.05	13.16	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.008	0.99	0.0	0.04	15.83	0.00	2.222	3.55	1.61	4.2	95.8	0.0	0.97	0.38	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7PiU	13453	2021-12-01	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	2.0	0.09	14.44	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.003	0.55	2.0	0.04	16.30	0.00	2.151	5.74	1.46	2.2	97.8	0.0	2.04	1.92	0.70	0.89	4.47	7788	974	12	0	3	88	0	logfile
✔	6VSC	21376	2021-12-01	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.75	0.0	0.05	18.24	0.01	2.083	17.03	3.77	0.2	99.7	0.1	0.63	1.23	0.87	0.84	3.28	9670	1175	5	0	0	0	0	logfile
✔	7S8P	24900	2021-12-01	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.83	0.83	4.19	8093	1089	5	0	1	0	0	logfile
✘	7K0K	22600	2021-12-01	2020-09-04	2.6	2.96	—	2.9	0.006	0.71	0.0	0.05	12.70	0.00	1.915	7.43	0.00	2.2	97.8	0.0	0.53	0.68	0.84	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7615	964	4	0	2	0	0	logfile
✔	6SKi	10225	2021-12-01	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.66	0.86	4.48	4434	569	2	0	0	0	0	logfile
✔	7LY0	23581	2021-12-01	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.009	0.82	0.0	0.04	15.47	0.01	2.156	8.66	2.50	2.1	97.9	0.0	0.63	1.63	0.70	0.76	4.04	2805	354	5	0	6	0	0	logfile
✔	7CM7	30403	2021-12-02	2020-07-25	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39216	4960	16	0	8	0	0	logfile
✔	3J9S	6272	2021-12-01	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	24.94	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.64	0.0	0.04	17.34	0.00	1.152	8.77	1.52	1.9	98.1	0.0	1.29	1.91	0.70	0.89	3.42	9813	1191	3	0	15	315	0	logfile
✔	7DW9	30877	2021-12-01	2021-01-15	2.6	3.41	—	3.1	0.006	0.77	0.0	0.10	12.06	0.01	2.306	1.39	0.09	2.4	97.6	0.0	-0.01	0.73	0.86	4.80	3.1	0.005	0.74	0.0	0.04	14.84	0.01	2.178	6.22	1.58	2.2	97.8	0.0	0.93	0.54	0.73	0.87	3.13	10105	1283	8	0	4	0	0	logfile
✔	6X9o	22106	2021-12-02	2020-06-03	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20899	2669	2	0	0	0	0	logfile

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