Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NK7	12432	2022-07-07	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.65	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.54	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.91	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7FEB	31551	2022-07-05	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.42	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.003	0.60	0.0	0.04	16.51	0.00	2.076	8.81	2.76	1.6	98.4	0.0	0.66	1.95	0.75	0.85	3.10	24075	3024	9	0	0	0	0	logfile
✔	7JFo	22308	2022-07-07	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.82	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.004	0.70	0.0	0.05	14.50	0.01	2.200	7.44	0.77	2.8	97.2	0.0	1.05	0.78	0.70	0.81	5.91	38958	4832	40	0	0	1198	0	logfile
✔	7RTB	24680	2022-07-03	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.54	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	16.87	0.00	2.263	5.54	2.21	2.5	97.5	0.0	1.23	0.67	0.68	0.82	3.94	8972	1169	7	0	0	1	0	logfile
✔	7S4H	24826	2022-07-07	2021-09-08	2.14	2.27	—	2.3	0.009	1.03	3.0	0.05	19.43	0.00	1.502	14.71	2.83	4.8	94.9	0.2	0.71	0.77	0.85	4.94	2.2	0.003	0.60	0.0	0.05	18.13	0.00	2.015	8.44	2.29	4.7	95.2	0.1	0.92	0.75	0.81	0.91	4.88	22889	2577	27	0	63	410	0	logfile
✔	7PK6	13466	2022-07-04	2021-08-25	2.15	2.27	2.23	2.3	0.006	0.64	0.0	0.05	17.09	0.00	1.864	4.63	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.005	0.64	0.0	0.04	17.43	0.00	1.686	7.61	2.16	2.4	97.6	0.0	1.35	0.87	0.78	0.88	5.07	120580	15100	20	0	0	0	0	logfile
✘	7Q4P	13812	2022-07-03	2021-11-01	2.15	2.69	2.22	2.5	0.011	1.85	41.0	0.13	17.16	0.01	1.225	3.61	1.95	2.6	97.4	0.0	-1.82	0.79	0.90	5.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13451	1535	17	45	5	241	0	logfile
✔	7S4J	24828	2022-07-07	2021-09-09	2.16	2.44	—	2.5	0.009	1.07	1.0	0.05	19.63	0.00	1.948	13.97	4.30	5.2	94.3	0.5	0.65	0.75	0.84	4.80	2.4	0.003	0.64	0.0	0.05	17.53	0.00	1.962	9.05	2.83	4.9	94.8	0.3	0.60	0.34	0.79	0.91	4.74	22780	2577	27	0	63	304	0	logfile
✘	6KQK	0753	2022-07-03	2019-08-18	2.17	3.14	—	2.8	0.018	1.16	12.0	0.06	14.67	0.00	1.260	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63373	3936	24	0	48	0	31225	logfile
✔	7NKJ	12441	2022-07-07	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7MXY	24076	2022-07-05	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.77	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.007	0.66	0.0	0.04	18.15	0.00	1.950	15.23	4.84	3.7	96.3	0.0	0.55	1.14	0.53	0.70	2.59	22265	1406	12	0	5	2	11129	logfile
✔	6WZ5	21970	2022-07-03	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.77	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.34	0.00	2.154	5.80	0.77	1.8	98.2	0.0	2.64	0.89	0.87	0.89	3.82	12443	774	10	306	0	0	0	logfile
✔	7oF0	12865	2022-07-06	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.50	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	2.8	0.006	0.68	0.0	0.04	16.28	0.01	1.769	10.68	1.38	3.0	97.0	0.0	1.10	0.47	0.85	0.87	3.48	99476	8446	62	1432	64	0	0	logfile
✔	6R7G	4740	2022-07-05	2019-03-28	2.2	2.28	—	2.3	0.006	0.85	0.0	0.05	13.63	0.01	1.880	1.89	3.05	4.3	95.7	0.0	-2.46	0.58	0.88	6.31	2.3	0.003	0.56	0.0	0.04	14.58	0.00	2.212	4.65	0.70	4.6	95.4	0.0	1.69	0.91	0.58	0.89	6.03	22012	2717	27	69	0	92	0	logfile
✘	7DRT	30827	2022-07-03	2020-12-29	2.2	2.32	—	2.3	0.011	1.31	9.0	0.09	12.83	0.01	1.414	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6849	830	7	0	7	10	0	logfile
✔	7QER	13938	2022-07-04	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.003	0.57	0.0	0.04	14.90	0.00	2.228	2.27	2.00	1.0	99.0	0.0	3.45	1.24	0.84	0.89	3.51	19097	2244	36	0	60	305	0	logfile
✘	5A1A	2984	2022-07-06	2015-04-29	2.2	2.04	2.58	2.5	0.008	1.21	0.0	0.04	13.01	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33696	4088	12	0	20	776	0	logfile
✘	6PJ6	20353	2022-07-11	2019-06-27	2.2	2.48	—	2.5	0.011	1.06	14.0	0.06	15.08	0.01	1.148	5.33	2.25	5.6	94.4	0.1	-2.65	0.62	0.85	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	154542	3356	67	3016	187	3897	59624	logfile
✔	7N06	24101	2022-07-04	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.31	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.55	0.0	0.05	16.62	0.00	2.075	4.07	0.92	1.6	98.4	0.0	0.41	1.11	0.84	0.89	6.20	17223	2082	21	18	0	555	0	logfile
✘	7W9K	32368	2022-07-04	2021-12-09	2.2	2.67	—	2.6	0.018	1.95	34.0	0.13	15.54	0.01	1.318	12.51	2.93	4.8	94.6	0.6	-1.65	0.67	0.78	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14933	1705	9	0	43	9	0	logfile

• ← previous
• Page 4 of 392
• next →