Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RCV	24407	2023-11-14	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✔	8Q27	18070	2023-11-14	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✘	7F4V	31455	2023-11-16	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	7o6P	12739	2023-11-14	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✘	8CRS	26957	2023-11-17	2022-05-11	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17888	1998	12	0	12	1692	0	logfile
✔	8GHE	40042	2023-11-18	2023-03-09	2.05	2.65	2.15	2.5	0.006	0.73	0.0	0.05	12.12	0.01	2.229	4.10	0.04	1.7	98.3	0.0	-0.85	0.83	0.91	5.79	2.4	0.003	0.58	0.0	0.04	14.50	0.00	2.155	9.80	0.92	1.4	98.6	0.0	1.63	0.46	0.82	0.91	5.44	22193	2648	12	0	5	830	0	logfile
✔	8E49	27884	2023-11-15	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.76	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.6	0.005	0.60	0.0	0.04	13.62	0.01	1.890	2.36	1.17	5.2	94.8	0.1	0.08	0.21	0.70	0.92	5.87	115871	1179	11	3016	1	0	41885	logfile
✔	8F6A	28878	2023-11-21	2022-11-16	2.06	3.05	2.14	2.7	0.004	0.69	0.0	0.05	17.55	0.01	2.320	4.08	3.21	3.1	96.9	0.0	1.20	0.80	0.76	4.28	2.7	0.004	0.54	0.0	0.04	16.39	0.00	2.057	2.38	0.63	3.6	96.4	0.0	1.60	0.85	0.81	0.91	4.52	93058	5950	28	0	0	0	47110	logfile
✘	7oY2	13108	2023-11-14	2021-06-23	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	8CA7	16520	2023-11-17	2023-01-24	2.06	1.61	1.93	1.9	0.012	1.53	0.0	0.14	14.84	0.03	1.726	0.60	0.71	3.0	96.8	0.1	-1.46	0.62	0.75	4.98	1.9	0.004	0.78	0.0	0.05	15.37	0.01	1.755	8.56	1.56	2.2	97.7	0.1	1.22	0.46	0.68	0.78	4.87	18093	848	19	502	42	543	0	logfile
✔	8E2D	27832	2023-11-15	2022-08-15	2.07	2.27	2.16	2.3	0.003	0.56	0.0	0.04	15.75	0.00	1.968	6.49	0.85	2.0	98.0	0.0	1.44	0.63	0.82	4.02	2.3	0.003	0.53	0.0	0.04	15.83	0.00	1.974	6.71	1.02	2.3	97.7	0.0	1.97	0.39	0.64	0.83	3.91	62460	3936	2	0	0	0	31562	logfile
✔	8P5V	17454	2023-11-13	2023-05-24	2.07	2.90	2.14	2.5	0.009	1.09	0.0	0.06	14.19	0.02	2.018	1.82	0.53	2.7	97.3	0.0	0.06	0.90	0.95	6.07	2.6	0.003	0.64	0.0	0.04	14.85	0.00	1.913	3.53	0.58	2.0	98.0	0.0	1.33	0.88	0.86	0.93	5.49	54248	6726	18	0	24	1280	0	logfile
✔	7QKL	14046	2023-11-13	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✔	8D1G	27129	2023-11-16	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.006	0.68	0.0	0.05	17.43	0.01	2.142	7.81	0.52	1.3	98.7	0.0	1.57	0.91	0.71	0.86	5.67	16201	1735	15	0	61	620	0	logfile
✔	7KJR	22898	2023-11-13	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.53	0.0	0.04	16.24	0.00	2.088	9.90	0.99	2.1	97.9	0.0	1.24	0.40	0.66	0.87	4.76	3840	448	8	0	2	122	0	logfile
✔	8iJX	35502	2023-11-15	2023-02-28	2.08	2.24	2.11	2.3	0.007	0.93	0.0	0.05	15.21	0.01	2.024	5.04	1.50	1.7	98.3	0.0	1.40	0.64	0.84	6.06	2.3	0.004	0.64	0.0	0.05	17.04	0.01	1.969	5.14	1.69	1.8	98.2	0.0	1.05	0.80	0.69	0.87	5.82	10545	1251	6	0	12	373	0	logfile
✔	7ZYL	15026	2023-11-13	2022-05-25	2.08	2.56	2.12	2.4	0.010	0.62	0.0	0.05	18.82	0.00	2.104	14.15	0.00	0.8	99.2	0.0	0.55	0.77	0.89	6.49	2.4	0.004	0.70	0.0	0.05	19.02	0.00	2.270	6.95	1.43	0.8	99.2	0.0	0.39	0.29	0.79	0.91	6.52	3992	484	12	0	12	0	0	logfile
✔	7RZQ	24774	2023-11-13	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	8E43	27878	2023-11-15	2022-08-17	2.09	2.88	2.49	2.6	0.006	0.57	0.0	0.03	12.79	0.02	1.945	2.00	1.06	4.9	94.8	0.3	-2.82	0.73	0.90	5.55	2.6	0.005	0.58	0.0	0.04	13.92	0.01	1.922	3.36	1.38	5.8	93.8	0.3	-0.17	0.38	0.72	0.90	5.17	115905	1179	11	3015	1	0	41874	logfile
✔	8G6Y	29788	2023-11-21	2023-02-16	2.09	1.85	2.01	1.9	0.007	0.89	0.0	0.05	14.74	0.03	1.446	5.72	3.72	3.5	96.3	0.2	-1.60	0.73	0.86	6.08	2.0	0.006	0.90	0.0	0.04	14.99	0.01	1.690	5.64	2.72	3.7	96.2	0.1	-0.27	1.19	0.73	0.89	5.97	93683	3175	69	3037	250	3460	0	logfile

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