Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DBG	27283	2023-04-23	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	7P8W	13256	2023-04-24	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	7UZS	26917	2023-04-21	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.1	0.004	0.58	0.0	0.04	17.92	0.00	2.030	4.15	2.15	2.2	97.8	0.0	1.03	0.31	0.64	0.87	6.34	10550	658	1	0	0	193	5183	logfile
✔	7TYF	26178	2023-04-21	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.45	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.64	0.0	0.04	16.18	0.00	2.202	6.55	1.26	2.3	97.7	0.0	0.96	0.50	0.66	0.86	4.67	10331	1266	12	0	16	83	0	logfile
✔	8G46	29714	2023-04-20	2023-02-08	2.2	2.34	2.28	2.4	0.009	0.98	0.0	0.06	15.92	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.003	0.65	0.0	0.04	16.36	0.00	2.128	5.78	1.27	2.7	97.3	0.0	0.07	0.27	0.62	0.83	4.26	8603	1064	7	0	2	110	0	logfile
✔	8EEP	28054	2023-04-20	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✔	7N06	24101	2023-04-24	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.52	0.0	0.05	16.56	0.00	2.105	3.80	0.92	1.5	98.5	0.0	0.44	1.11	0.84	0.90	6.25	17223	2082	21	18	0	555	0	logfile
✔	7DRT	30827	2023-04-20	2020-12-29	2.2	2.32	—	2.3	0.011	1.32	9.0	0.09	13.05	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.69	0.0	0.04	17.16	0.01	2.248	10.87	5.31	6.3	93.6	0.1	-0.26	1.11	0.64	0.77	2.68	6849	830	7	0	7	10	0	logfile
✔	6WZ5	21970	2023-04-22	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.31	0.00	2.156	6.07	1.08	1.7	98.3	0.0	2.65	0.90	0.87	0.89	3.95	12443	774	10	306	0	0	0	logfile
✔	7SNH	25226	2023-04-23	2021-10-28	2.2	2.26	—	2.2	0.006	0.75	0.0	0.05	19.52	0.01	2.213	6.69	1.32	1.7	98.3	0.0	0.45	0.76	0.86	4.93	2.2	0.004	0.59	0.0	0.04	18.78	0.01	2.187	7.08	1.98	2.0	98.0	0.0	0.43	0.33	0.78	0.89	4.85	15828	1904	8	0	8	0	0	logfile
✔	7BGL	12183	2023-04-26	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.70	0.0	0.08	19.34	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.002	0.59	0.0	0.04	17.17	0.00	2.143	8.93	3.27	7.1	92.9	0.0	-0.12	0.94	0.74	0.90	3.06	120484	15626	104	0	52	0	0	logfile
✔	7QER	13938	2023-04-25	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	8DBF	27282	2023-04-29	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile
✔	8GVK	32099	2023-04-20	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	8A2U	15107	2023-04-23	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✘	7Q3L	13793	2023-04-25	2021-10-28	2.21	2.93	2.31	2.6	0.008	1.50	26.0	0.12	15.22	0.01	1.876	2.99	2.50	3.2	96.8	0.0	-1.25	0.81	0.86	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20470	2440	16	41	4	180	0	logfile
✘	7VZR	32229	2023-04-25	2021-11-16	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21354	2266	22	0	117	6	0	logfile
✔	8A2S	15105	2023-04-23	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.003	0.60	0.0	0.05	16.41	0.00	1.907	4.99	0.84	1.4	98.6	0.0	0.79	0.82	0.72	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	8CZi	27098	2023-04-19	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	7XiB	33201	2023-04-20	2022-04-12	2.23	2.35	2.26	2.4	0.009	0.71	0.0	0.17	18.00	0.01	2.184	6.98	4.14	3.9	96.1	0.0	-1.86	0.65	0.81	5.40	2.4	0.003	0.71	0.0	0.07	18.52	0.00	2.215	7.05	3.29	3.1	96.9	0.0	0.12	0.94	0.65	0.82	4.45	7178	815	6	23	3	196	0	logfile

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