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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YBQ | 10771 | 2024-03-22 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.039 | 1.58 | 0.0 | 0.05 | 15.03 | 0.01 | 1.550 | 5.79 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | 2.0 | 0.003 | 0.70 | 0.0 | 0.05 | 15.85 | 0.00 | 2.125 | 5.50 | 0.70 | 2.5 | 97.5 | 0.0 | 0.14 | 0.45 | 0.85 | 0.90 | 6.02 | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✔ | 8AYE | 15712 | 2024-03-20 | 2022-09-02 | 1.96 | 2.01 | 1.96 | 2.0 | 0.008 | 0.94 | 0.0 | 0.05 | 23.14 | 0.02 | 1.743 | 4.42 | 1.25 | 2.6 | 97.3 | 0.1 | 0.33 | 0.76 | 0.89 | 6.01 | 2.0 | 0.005 | 0.76 | 0.0 | 0.04 | 22.88 | 0.01 | 1.790 | 4.80 | 1.70 | 2.6 | 97.3 | 0.1 | 0.65 | 0.84 | 0.76 | 0.91 | 5.98 | 140205 | 5587 | 67 | 4475 | 311 | 0 | 0 | logfile |
✔ | 7VD8 | 31910 | 2024-03-23 | 2021-09-06 | 1.96 | 1.42 | 2.01 | 1.7 | 0.002 | 0.54 | 0.0 | 0.04 | 16.17 | 0.00 | 2.013 | 2.67 | 0.03 | 2.2 | 97.8 | 0.0 | 5.39 | 0.75 | 0.80 | 7.92 | 1.7 | 0.003 | 0.57 | 0.0 | 0.04 | 16.51 | 0.00 | 1.985 | 2.08 | 0.56 | 1.2 | 98.8 | 0.0 | 5.31 | 0.23 | 0.74 | 0.80 | 8.07 | 38201 | 4128 | 72 | 0 | 329 | 2472 | 0 | logfile |
✔ | 7TFC | 25869 | 2024-03-25 | 2022-01-06 | 1.96 | 2.13 | — | 2.1 | 0.002 | 0.53 | 0.0 | 0.04 | 17.59 | 0.00 | 1.913 | 6.13 | 1.74 | 4.1 | 95.9 | 0.0 | 0.82 | 0.43 | 0.60 | 5.65 | 2.1 | 0.003 | 0.67 | 4.0 | 0.04 | 17.30 | 0.00 | 1.719 | 17.16 | 1.39 | 4.2 | 95.8 | 0.0 | 1.22 | 0.98 | 0.72 | 0.83 | 6.08 | 50456 | 6356 | 42 | 0 | 28 | 0 | 140 | logfile |
✘ | 7FiX | 31605 | 2024-03-16 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✔ | 7MiJ | 23853 | 2024-03-19 | 2021-04-17 | 1.98 | 1.95 | — | 2.0 | 0.010 | 1.38 | 4.0 | 0.05 | 20.53 | 0.01 | 2.320 | 3.08 | 0.18 | 2.8 | 97.2 | 0.0 | -3.96 | 0.75 | 0.81 | 5.48 | 2.0 | 0.003 | 0.59 | 0.0 | 0.04 | 18.64 | 0.00 | 2.163 | 5.38 | 1.40 | 3.1 | 96.9 | 0.0 | 0.91 | 1.08 | 0.77 | 0.84 | 4.95 | 23010 | 2556 | 12 | 0 | 38 | 328 | 0 | logfile |
✘ | 7Z18 | 14444 | 2024-03-23 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.45 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✔ | 6YL3 | 10835 | 2024-03-27 | 2020-04-06 | 1.98 | 2.04 | 1.99 | 2.0 | 0.067 | 3.60 | 246.0 | 0.36 | 16.31 | 0.02 | 1.877 | 4.50 | 2.74 | 5.3 | 94.4 | 0.4 | -2.46 | 0.78 | 0.83 | 6.40 | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 16.13 | 0.01 | 1.767 | 5.13 | 1.70 | 3.8 | 96.0 | 0.1 | -0.04 | 0.82 | 0.81 | 0.86 | 6.97 | 150156 | 9552 | 84 | 0 | 24 | 3672 | 73044 | logfile |
✔ | 8E2E | 27833 | 2024-03-20 | 2022-08-15 | 1.98 | 2.09 | 2.04 | 2.1 | 0.007 | 0.74 | 0.0 | 0.04 | 14.15 | 0.01 | 2.114 | 9.86 | 1.48 | 3.7 | 96.3 | 0.0 | -0.81 | 0.69 | 0.86 | 6.40 | 2.1 | 0.004 | 0.62 | 0.0 | 0.04 | 14.40 | 0.00 | 2.037 | 8.26 | 1.42 | 1.3 | 98.7 | 0.0 | 2.18 | 0.28 | 0.69 | 0.86 | 6.22 | 26633 | 1654 | 4 | 0 | 0 | 377 | 13332 | logfile |
✔ | 8G17 | 29664 | 2024-03-14 | 2023-02-01 | 1.98 | 1.88 | 1.96 | 2.0 | 0.004 | 0.64 | 0.0 | 0.05 | 15.70 | 0.00 | 2.172 | 5.82 | 0.76 | 3.3 | 96.7 | 0.0 | 0.61 | 0.51 | 0.71 | 6.43 | 2.0 | 0.003 | 0.68 | 0.0 | 0.05 | 16.03 | 0.01 | 2.250 | 1.96 | 2.08 | 3.2 | 96.8 | 0.0 | 0.42 | 1.22 | 0.72 | 0.87 | 6.85 | 10016 | 1336 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E3o | 27869 | 2024-03-12 | 2022-08-17 | 1.99 | 2.75 | 2.52 | 2.6 | 0.006 | 0.41 | 0.0 | 0.05 | 23.68 | 0.02 | 1.955 | 2.37 | 0.74 | 4.6 | 95.1 | 0.3 | -2.75 | 0.70 | 0.88 | 5.93 | 2.5 | 0.006 | 0.63 | 0.0 | 0.04 | 23.60 | 0.01 | 1.944 | 3.94 | 2.23 | 5.2 | 94.7 | 0.2 | 0.03 | 1.00 | 0.69 | 0.88 | 5.74 | 115702 | 1179 | 11 | 3015 | 2 | 0 | 41809 | logfile |
✔ | 8AB6 | 15312 | 2024-03-22 | 2022-07-04 | 2.0 | 1.80 | 1.92 | 1.9 | 0.010 | 1.60 | 28.0 | 0.11 | 17.51 | 0.01 | 2.091 | 3.07 | 1.89 | 2.3 | 97.7 | 0.0 | -0.82 | 0.68 | 0.86 | 6.61 | 1.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.78 | 0.00 | 2.059 | 3.63 | 0.74 | 1.7 | 98.3 | 0.0 | 2.05 | 0.95 | 0.72 | 0.86 | 6.21 | 32914 | 3878 | 53 | 0 | 30 | 1326 | 0 | logfile |
✔ | 8PPo | 17806 | 2024-03-10 | 2023-07-07 | 2.0 | 2.30 | 1.95 | 2.2 | 0.008 | 1.20 | 1.0 | 0.07 | 13.41 | 0.01 | 2.625 | 0.29 | 0.00 | 6.7 | 93.3 | 0.0 | 0.71 | 0.58 | 0.84 | 6.50 | 2.2 | 0.004 | 0.53 | 0.0 | 0.06 | 14.00 | 0.00 | 2.289 | 0.29 | 0.52 | 0.0 | 100.0 | 0.0 | 1.18 | 0.37 | 0.50 | 0.88 | 5.44 | 1696 | 240 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FoZ | 29357 | 2024-03-19 | 2023-01-03 | 2.0 | 2.03 | 2.09 | 2.0 | 0.009 | 0.91 | 0.0 | 0.06 | 15.79 | 0.01 | 2.238 | 2.94 | 1.31 | 0.5 | 99.5 | 0.0 | 0.22 | 0.80 | 0.91 | 7.15 | 2.0 | 0.002 | 0.51 | 0.0 | 0.04 | 15.74 | 0.00 | 2.290 | 3.01 | 1.23 | 1.4 | 98.6 | 0.0 | 0.78 | 0.24 | 0.79 | 0.91 | 6.99 | 23648 | 3072 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 6WX6 | 21951 | 2024-03-14 | 2020-05-09 | 2.0 | 2.11 | 2.08 | 2.1 | 0.006 | 0.69 | 0.0 | 0.04 | 14.94 | 0.00 | 2.277 | 0.00 | 0.00 | 1.2 | 98.8 | 0.0 | 1.60 | 0.77 | 0.88 | 7.70 | 2.1 | 0.003 | 0.51 | 0.0 | 0.03 | 16.14 | 0.00 | 2.032 | 2.91 | 0.69 | 1.2 | 98.8 | 0.0 | 4.80 | 0.56 | 0.79 | 0.90 | 7.39 | 68332 | 4128 | 56 | 0 | 8 | 2420 | 32664 | logfile |
✔ | 8F0J | 28758 | 2024-03-14 | 2022-11-03 | 2.0 | 1.77 | 1.94 | 1.9 | 0.005 | 0.61 | 1.0 | 0.05 | 15.42 | 0.00 | 2.246 | 4.03 | 0.40 | 1.1 | 98.9 | 0.0 | -1.49 | 0.53 | 0.75 | 5.18 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 17.18 | 0.00 | 2.218 | 5.84 | 1.72 | 2.3 | 97.7 | 0.0 | 1.49 | 0.83 | 0.54 | 0.78 | 5.65 | 9678 | 1157 | 11 | 0 | 18 | 25 | 0 | logfile |
✔ | 7QEY | 13944 | 2024-03-14 | 2021-12-03 | 2.0 | 2.46 | — | 2.2 | 0.005 | 0.85 | 0.0 | 0.03 | 10.53 | 0.00 | 2.199 | 3.57 | 2.35 | 1.7 | 98.3 | 0.0 | 1.74 | 0.77 | 0.90 | 5.27 | 2.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.32 | 0.00 | 2.154 | 4.43 | 2.66 | 2.4 | 97.6 | 0.0 | 2.99 | 0.55 | 0.78 | 0.93 | 4.39 | 9467 | 1092 | 18 | 0 | 30 | 281 | 0 | logfile |
✔ | 8F2B | 28812 | 2024-03-15 | 2022-11-07 | 2.0 | 1.79 | 2.02 | 1.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.23 | 0.00 | 2.278 | 5.13 | 1.32 | 1.0 | 99.0 | 0.0 | -2.02 | 0.54 | 0.74 | 4.60 | 1.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.172 | 6.20 | 1.98 | 2.6 | 97.4 | 0.0 | 1.21 | 0.96 | 0.55 | 0.75 | 5.08 | 10360 | 1273 | 12 | 0 | 16 | 31 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-03-10 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 7oAE | 12775 | 2024-03-15 | 2021-04-19 | 2.0 | 2.65 | — | 2.2 | 0.008 | 0.53 | 0.0 | 0.05 | 9.44 | 0.00 | 2.440 | 0.99 | 0.00 | 2.6 | 97.4 | 0.0 | 0.22 | 0.77 | 0.91 | 6.46 | 2.2 | 0.002 | 0.51 | 0.0 | 0.04 | 14.93 | 0.00 | 2.243 | 6.08 | 0.61 | 1.5 | 98.5 | 0.0 | 0.51 | 2.66 | 0.78 | 0.93 | 6.29 | 12768 | 1680 | 42 | 0 | 0 | 0 | 0 | logfile |