Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FTJ	3295	2021-10-06	2016-01-14	2.3	2.04	—	2.0	0.010	1.35	0.0	0.18	14.83	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.005	0.87	0.0	0.05	17.87	0.01	2.079	14.43	2.33	6.6	93.3	0.1	-0.60	1.24	0.47	0.68	1.56	34602	4338	18	0	18	120	0	logfile
✔	7MBQ	23741	2021-10-06	2021-04-01	2.3	3.00	—	2.6	0.019	0.70	0.0	0.09	15.29	0.01	2.246	6.68	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.7	0.005	0.60	0.0	0.04	15.36	0.00	2.263	6.81	1.63	3.0	97.0	0.0	2.13	0.38	0.78	0.92	4.06	30616	3984	12	0	20	16	0	logfile
✔	7oNJ	12996	2021-10-04	2021-05-25	2.3	2.52	2.24	2.5	0.019	1.53	0.0	0.06	21.26	0.01	2.155	8.28	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.47	0.0	0.04	18.14	0.00	2.192	7.92	0.47	0.9	99.1	0.0	2.25	1.56	0.77	0.89	4.33	16947	1834	21	0	63	266	0	logfile
✔	7LGU	23329	2021-10-03	2021-01-21	2.3	2.77	—	2.7	0.011	0.60	0.0	0.26	14.23	0.00	2.197	8.08	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.003	0.67	0.0	0.09	14.77	0.00	2.174	6.90	1.15	1.5	98.5	0.0	1.40	0.71	0.65	0.85	5.59	11597	1360	6	0	110	111	0	logfile
✔	6SK0	10219	2021-10-03	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.70	0.0	0.05	17.22	0.00	2.142	10.94	0.81	3.9	96.1	0.0	-1.31	1.50	0.79	0.89	6.82	5826	792	3	0	0	0	0	logfile
✔	6Li9	0903	2021-10-04	2019-12-10	2.3	2.38	—	2.4	0.007	1.00	0.0	0.07	13.94	0.01	2.265	2.26	0.21	5.0	95.0	0.0	-4.31	0.63	0.75	4.03	2.4	0.003	0.71	0.0	0.05	16.19	0.01	2.131	6.60	1.95	4.3	95.7	0.0	0.18	1.61	0.73	0.85	3.65	17988	2164	22	0	26	246	0	logfile
✔	6KPK	0749	2021-10-04	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.74	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.003	0.72	1.0	0.13	14.32	0.00	1.999	4.52	0.75	3.6	96.4	0.0	1.17	0.77	0.85	0.89	4.11	62209	3936	24	0	24	0	31225	logfile
✔	6WZG	21972	2021-10-03	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.80	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.62	0.0	0.04	16.35	0.00	2.108	5.66	1.76	1.9	98.1	0.0	1.50	1.00	0.73	0.86	4.95	8939	1165	6	0	0	0	0	logfile
✔	6UVA	20906	2021-10-03	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.152	8.98	2.88	4.3	95.7	0.0	0.24	1.31	0.66	0.78	3.06	9561	1199	7	0	0	0	0	logfile
✔	6KQ4	0750	2021-10-04	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.60	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.73	1.0	0.13	15.81	0.00	2.003	4.84	0.19	3.8	96.2	0.0	1.26	0.79	0.86	0.90	4.28	62206	3936	24	0	24	0	31222	logfile
✔	7N8H	24236	2021-10-06	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.59	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.004	0.66	0.0	0.05	14.36	0.00	1.997	4.16	1.26	1.9	98.1	0.0	0.60	0.99	0.76	0.84	4.73	32921	4356	36	0	60	771	0	logfile
✔	6VSA	21373	2021-10-03	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	12.84	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.006	0.64	0.0	0.04	17.43	0.00	2.161	11.01	1.45	0.3	99.6	0.1	1.39	1.15	0.93	0.90	4.43	9712	1175	10	0	0	42	0	logfile
✔	7RK9	24495	2021-10-20	2021-07-22	2.32	2.78	—	2.8	0.008	0.68	0.0	0.05	15.89	0.01	2.150	7.34	0.69	2.9	97.1	0.0	-0.56	0.69	0.89	5.05	2.8	0.006	0.62	0.0	0.05	16.55	0.01	2.124	7.59	1.83	3.0	97.0	0.0	-0.37	0.30	0.59	0.85	4.93	247500	31380	60	0	0	0	0	logfile
✔	6L3T	0825	2021-10-04	2019-10-15	2.34	2.41	2.27	2.4	0.012	1.03	0.0	0.05	16.76	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.60	0.0	0.04	16.25	0.00	1.907	2.49	1.41	1.0	99.0	0.0	2.66	1.61	0.67	0.87	4.33	19722	1206	18	0	6	204	9588	logfile
✘	6KMW	0726	2021-10-04	2019-08-01	2.35	2.41	—	2.4	0.026	2.46	0.0	0.08	20.20	0.02	1.212	6.36	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✘	6K61	9918	2021-10-07	2019-05-31	2.37	2.37	—	2.4	0.010	1.31	0.0	0.08	17.20	0.01	1.219	7.96	0.96	3.1	96.7	0.1	-2.65	0.60	0.88	5.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49283	4542	44	0	259	0	0	logfile
✔	6U2J	20620	2021-10-05	2019-08-20	2.37	2.47	2.57	2.4	0.007	0.89	0.0	0.06	10.08	0.01	2.320	4.16	0.41	4.8	95.2	0.0	-3.36	0.79	0.83	4.12	2.4	0.003	0.67	0.0	0.04	14.64	0.00	2.247	7.17	2.41	3.8	96.2	0.0	0.12	0.68	0.81	0.85	3.85	71744	9200	32	0	48	0	0	logfile
✘	6LY5	30012	2021-10-06	2020-02-13	2.38	2.52	—	2.4	0.014	1.78	14.0	0.30	20.95	0.01	1.178	37.27	9.67	7.7	91.6	0.6	-4.28	0.74	0.81	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81344	6510	76	0	723	153	0	logfile
✔	7DoP	30796	2021-10-07	2020-12-15	2.38	2.46	—	2.5	0.005	0.78	0.0	0.05	16.24	0.01	1.895	5.35	2.21	3.7	96.3	0.0	-1.87	0.65	0.82	3.09	2.5	0.003	0.62	0.0	0.05	16.32	0.00	2.012	4.28	1.67	2.4	97.6	0.0	0.23	0.38	0.70	0.86	2.59	41700	5352	24	0	12	0	0	logfile
✔	6ZXA	11516	2021-10-03	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	9.45	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.026	2.78	0.0	0.05	21.30	0.01	2.229	12.30	2.38	12.5	87.5	0.0	0.94	0.32	0.75	0.87	4.36	8442	791	28	0	35	0	0	logfile

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