Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	7PF1	13364	2022-12-21	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✔	7QET	13940	2022-12-14	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.004	0.56	0.0	0.04	14.36	0.00	2.189	3.28	1.98	1.2	98.8	0.0	3.48	0.38	0.82	0.92	3.56	19205	2256	36	0	60	305	0	logfile
✔	6PXM	20521	2022-12-18	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32736	4080	24	0	0	0	0	logfile
✔	7QEW	13943	2022-12-12	2021-12-03	2.1	2.62	—	2.2	0.009	0.60	0.0	0.03	11.35	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.63	0.00	2.197	5.67	1.29	2.9	97.1	0.0	2.91	1.06	0.79	0.92	3.45	9702	1128	18	0	30	234	0	logfile
✔	7SCA	25031	2022-12-11	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.53	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.54	0.0	0.04	16.62	0.00	2.126	8.47	0.98	0.9	99.1	0.0	2.90	1.09	0.79	0.85	5.23	55437	6836	116	0	54	1325	0	logfile
✔	6XZ7	10655	2022-12-17	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.42	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.004	0.75	0.0	0.04	14.76	0.01	1.301	5.96	2.37	2.3	97.5	0.1	0.29	0.92	0.72	0.90	5.25	94915	3351	45	3169	179	528	0	logfile
✔	8DQX	27663	2022-12-21	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.17	0.00	1.878	5.03	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.004	0.54	0.0	0.04	16.98	0.00	1.713	4.30	1.04	1.3	98.7	0.0	1.86	0.65	0.80	0.89	4.52	43173	2598	26	27	8	866	21143	logfile
✔	6X19	21993	2022-12-12	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	13.22	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.77	0.0	0.04	16.73	0.00	2.115	6.69	1.28	2.1	97.9	0.0	1.13	1.01	0.72	0.88	4.61	10277	1258	9	0	1	136	0	logfile
✔	7NK7	12432	2022-12-21	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.65	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.54	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.90	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7RZV	24779	2022-12-11	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7FEB	31551	2022-12-15	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.42	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.003	0.59	0.0	0.04	16.48	0.00	2.130	9.01	2.35	1.6	98.4	0.0	0.69	1.95	0.75	0.85	3.08	24075	3024	9	0	0	0	0	logfile
✔	7SQ9	25380	2022-12-13	2021-11-04	2.11	2.06	—	2.1	0.009	0.83	0.0	0.41	16.58	0.00	2.223	5.68	0.00	2.2	97.8	0.0	1.70	0.70	0.88	5.56	2.1	0.003	0.56	0.0	0.04	16.23	0.00	2.145	3.81	1.61	2.3	97.7	0.0	1.84	1.22	0.71	0.90	5.39	15810	1876	16	0	18	16	0	logfile
✔	8D1L	27134	2022-12-13	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.56	0.00	2.222	4.22	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.53	0.0	0.04	16.70	0.00	2.260	5.47	0.94	1.6	98.4	0.0	1.82	1.70	0.63	0.87	4.36	16306	1880	10	0	46	0	0	logfile
✘	7ZYY	15028	2022-12-18	2022-05-25	2.12	2.40	2.14	2.1	0.007	0.89	0.0	0.05	17.24	0.00	2.008	4.54	1.19	2.4	97.6	0.0	-0.65	0.91	0.89	4.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33924	4224	12	0	28	324	0	logfile
✔	7TF7	25864	2022-12-20	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	2.3	0.003	0.58	0.0	0.04	16.47	0.01	2.223	5.04	1.77	3.6	96.4	0.0	1.12	0.49	0.71	0.87	5.91	39976	4980	12	0	0	0	0	logfile
✔	7JFo	22308	2022-12-20	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.82	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.003	0.59	0.0	0.04	14.54	0.00	2.211	7.06	1.03	2.2	97.8	0.0	1.32	0.79	0.70	0.81	5.75	38958	4832	40	0	0	1198	0	logfile
✔	7S4H	24826	2022-12-21	2021-09-08	2.14	2.27	—	2.3	0.009	1.03	3.0	0.05	19.43	0.00	1.502	14.71	2.83	4.8	94.9	0.2	0.71	0.77	0.85	4.94	2.2	0.003	0.60	0.0	0.05	18.13	0.00	2.015	8.48	2.29	4.7	95.2	0.1	0.92	0.75	0.81	0.91	4.88	22889	2577	27	0	63	410	0	logfile
✔	7RTB	24680	2022-12-12	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.54	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	16.87	0.00	2.263	5.54	2.21	2.5	97.5	0.0	1.23	0.67	0.68	0.82	3.94	8972	1169	7	0	0	1	0	logfile
✔	8DR1	27668	2022-12-21	2022-07-20	2.14	2.91	2.21	2.7	0.008	0.57	0.0	0.04	17.93	0.00	1.946	2.77	0.74	1.4	98.6	0.0	1.79	0.80	0.77	4.33	2.7	0.004	0.53	0.0	0.04	17.89	0.00	1.718	3.30	1.00	1.4	98.6	0.0	1.91	1.06	0.78	0.88	4.67	43630	2608	21	64	8	12	21631	logfile

• ← previous
• Page 4 of 443
• next →