Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ST9	25422	2022-04-09	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	16.91	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.009	0.65	0.0	0.04	17.52	0.00	1.698	4.13	1.39	1.3	98.7	0.0	2.04	2.70	0.82	0.86	3.70	46553	2802	25	36	9	423	22930	logfile
✔	7BGL	12183	2022-04-07	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.65	0.0	0.08	19.44	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.003	0.61	0.0	0.05	17.04	0.00	2.156	8.45	3.24	7.7	92.3	0.0	-0.14	0.93	0.74	0.90	3.10	120484	15626	104	0	52	0	0	logfile
✔	7P8W	13256	2022-04-06	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.39	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.62	0.0	0.04	15.61	0.00	2.221	3.19	0.46	2.9	97.1	0.0	0.56	1.15	0.86	0.91	6.13	17668	2008	12	0	8	1110	0	logfile
✔	7P6B	13224	2022-04-04	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	5A1A	2984	2022-04-08	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.005	0.78	0.0	0.05	17.68	0.01	1.924	12.32	3.18	3.0	96.9	0.1	-0.70	0.61	0.54	0.79	3.98	33696	4088	12	0	20	776	0	logfile
✔	6X8M	22094	2022-04-08	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.48	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.005	0.73	0.0	0.05	16.05	0.01	2.097	4.08	1.07	3.3	96.7	0.0	-0.12	0.62	0.77	0.88	5.81	133440	16800	60	0	0	0	0	logfile
✔	7LXY	23579	2022-04-08	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.21	0.0	0.07	11.01	0.01	2.182	1.50	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.65	0.0	0.05	14.30	0.00	2.026	5.29	1.39	1.8	98.2	0.0	0.93	0.52	0.77	0.84	4.56	33987	4446	36	0	69	729	0	logfile
✔	7oF0	12865	2022-04-09	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.29	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	2.8	0.006	0.68	0.0	0.04	16.28	0.01	1.769	10.43	1.38	3.0	97.0	0.0	1.10	0.47	0.85	0.87	3.48	99476	8446	62	1432	64	0	0	logfile
✔	7TYF	26178	2022-04-05	2022-02-13	2.2	2.16	2.13	2.2	0.004	0.57	0.0	0.04	14.43	0.00	2.234	4.82	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.002	0.60	0.0	0.05	15.92	0.00	2.183	6.50	1.36	1.5	98.5	0.0	0.75	0.50	0.66	0.84	4.40	10331	1266	12	0	16	83	0	logfile
✔	7DRT	30827	2022-04-04	2020-12-29	2.2	2.32	—	2.3	0.011	1.32	9.0	0.09	12.92	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.004	0.73	0.0	0.04	17.38	0.01	2.204	10.65	5.87	6.8	93.1	0.1	-0.60	1.11	0.65	0.77	2.98	6849	830	7	0	7	10	0	logfile
✔	6M3X	30073	2022-04-05	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.006	0.74	0.0	0.05	16.80	0.01	2.314	5.98	1.12	3.2	96.8	0.0	-0.02	0.41	0.80	0.92	6.65	62387	7440	72	0	24	2243	0	logfile
✘	7SA3	24943	2022-04-05	2021-09-22	2.25	1.86	—	2.2	0.022	2.28	0.0	0.08	20.01	0.01	1.206	11.57	4.04	3.7	96.0	0.2	-1.16	0.78	0.84	4.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15960	1644	19	0	79	230	0	logfile
✔	7TEY	25855	2022-04-06	2022-01-06	2.25	2.88	—	2.7	0.004	0.78	0.0	0.06	12.97	0.01	2.293	3.31	0.00	2.0	98.0	0.0	0.06	0.77	0.83	3.44	2.7	0.004	0.58	0.0	0.05	14.91	0.00	2.126	6.66	0.93	2.0	98.0	0.0	0.68	1.16	0.76	0.84	3.54	21867	2703	24	0	56	0	0	logfile
✔	7VFD	31949	2022-04-05	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.49	0.0	0.05	15.37	0.00	2.246	3.23	0.47	2.1	97.9	0.0	0.43	1.13	0.80	0.88	5.42	13262	1623	6	0	0	350	0	logfile
✔	7VDA	31912	2022-04-06	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.003	0.60	0.0	0.04	18.09	0.00	2.073	9.03	3.21	2.5	97.5	0.0	0.92	0.42	0.66	0.83	4.25	23292	2976	6	0	0	0	0	logfile
✔	7DDE	30652	2022-04-09	2020-10-28	2.26	3.31	—	3.0	0.009	1.14	10.0	0.07	14.34	0.01	2.042	8.45	1.16	5.0	94.9	0.0	-2.84	0.71	0.85	3.66	3.0	0.003	0.65	0.0	0.05	16.03	0.00	1.969	13.61	1.01	6.2	93.8	0.0	-0.22	1.17	0.69	0.85	3.23	51171	6300	36	0	48	1911	0	logfile
✔	7VLK	32023	2022-04-07	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.32	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.56	0.0	0.04	17.13	0.00	2.162	6.42	2.98	2.6	97.4	0.0	1.39	0.27	0.77	0.86	3.26	28774	3698	12	0	0	0	0	logfile
✔	7QK6	14039	2022-04-04	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.57	0.0	0.05	15.85	0.00	2.385	4.06	0.69	5.8	94.2	0.0	-2.20	1.44	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7N00	24095	2022-04-04	2021-05-24	2.27	3.74	2.49	3.3	0.004	0.55	0.0	0.05	12.23	0.00	2.138	5.26	3.44	2.9	97.1	0.0	-1.01	0.78	0.78	4.22	3.4	0.006	0.86	0.0	0.05	14.89	0.01	1.993	10.78	2.07	3.1	96.9	0.0	-0.53	1.02	0.74	0.88	3.67	5817	806	4	0	0	0	0	logfile
✔	7DYR	30923	2022-04-05	2021-01-22	2.28	2.34	—	2.5	0.008	0.77	0.0	0.05	15.40	0.01	2.205	6.01	3.56	7.2	92.5	0.3	0.10	0.68	0.76	2.43	2.4	0.003	0.60	0.0	0.04	15.90	0.01	2.208	5.71	2.40	5.5	94.4	0.2	1.78	0.54	0.83	0.89	2.33	13326	1791	12	0	3	0	0	logfile

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