Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZZ1	15031	2023-04-20	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.21	0.01	2.159	3.90	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.003	0.60	0.0	0.04	17.94	0.00	2.116	8.71	2.87	2.6	97.4	0.0	1.09	1.10	0.91	0.90	4.07	4958	618	5	0	4	55	0	logfile
✔	7R06	14220	2023-04-22	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.85	6.0	0.06	20.28	0.01	2.153	12.58	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.008	0.74	0.0	0.05	19.63	0.01	2.143	7.49	3.03	1.6	98.3	0.2	0.51	0.52	0.78	0.85	4.66	31320	3588	12	66	0	0	0	logfile
✔	7N00	24095	2023-04-20	2021-05-24	2.27	3.74	2.49	3.3	0.004	0.55	0.0	0.05	12.23	0.00	2.138	5.26	3.44	2.9	97.1	0.0	-1.01	0.78	0.78	4.22	3.4	0.004	0.80	0.0	0.05	14.90	0.00	2.031	10.25	1.89	2.6	97.4	0.0	-0.51	1.02	0.73	0.87	3.43	5817	806	4	0	0	0	0	logfile
✔	7RXG	24730	2023-04-22	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	17.95	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.005	0.64	0.0	0.04	17.08	0.01	2.010	16.49	0.89	3.3	96.7	0.0	1.26	0.91	0.66	0.87	5.46	11380	1300	6	0	26	48	96	logfile
✔	7BCV	12144	2023-04-24	2020-12-21	2.28	2.56	—	2.5	0.008	0.96	0.0	0.06	14.30	0.01	2.371	4.21	0.47	3.0	97.0	0.0	-2.14	0.85	0.88	5.31	2.5	0.005	0.61	0.0	0.05	16.39	0.00	2.186	6.34	1.28	3.5	96.5	0.0	0.60	0.50	0.81	0.90	5.07	120960	15960	60	0	0	0	0	logfile
✔	7U5M	26355	2023-04-21	2022-03-02	2.28	2.36	2.38	2.4	0.008	0.96	0.0	0.07	12.19	0.00	2.296	4.95	1.87	3.6	96.4	0.0	-0.13	0.74	0.83	6.21	2.4	0.003	0.56	0.0	0.05	15.42	0.00	2.213	5.39	1.31	2.3	97.7	0.0	-0.23	0.33	0.75	0.84	5.46	10627	1328	12	0	4	399	0	logfile
✔	7DYR	30923	2023-04-22	2021-01-22	2.28	2.34	—	2.5	0.008	0.78	0.0	0.05	15.45	0.01	2.205	6.01	3.56	7.2	92.5	0.3	0.10	0.68	0.76	2.43	2.4	0.004	0.64	0.0	0.04	15.99	0.01	2.203	5.01	3.05	6.4	93.5	0.2	1.48	0.54	0.83	0.89	2.30	13326	1791	12	0	3	0	0	logfile
✔	8D1K	27133	2023-04-23	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.004	0.58	0.0	0.04	17.05	0.00	2.240	5.19	1.59	0.9	99.1	0.0	1.18	0.37	0.66	0.89	4.00	16305	1880	10	0	45	0	0	logfile
✔	7E27	30953	2023-04-22	2021-02-04	2.29	2.55	—	2.6	0.007	0.91	0.0	0.06	14.59	0.01	2.322	2.20	0.42	1.4	98.6	0.0	-2.60	0.63	0.86	4.69	2.5	0.004	0.63	0.0	0.05	15.83	0.00	2.192	3.34	2.03	1.1	98.9	0.0	1.34	0.40	0.64	0.87	4.68	11475	1435	15	0	5	90	0	logfile
✘	7P13	13154	2023-04-22	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	7E26	30952	2023-04-22	2021-02-04	2.29	2.97	—	2.9	0.009	0.93	0.0	0.06	14.05	0.01	2.312	2.69	1.19	1.5	98.5	0.0	-2.93	0.73	0.88	5.43	2.9	0.003	0.51	0.0	0.04	15.93	0.00	2.189	4.06	1.69	1.8	98.2	0.0	1.72	0.32	0.57	0.83	4.90	11360	1435	10	0	0	80	0	logfile
✔	7VD9	31911	2023-04-24	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7MBQ	23741	2023-04-29	2021-04-01	2.3	3.00	—	2.6	0.003	0.59	0.0	0.04	15.27	0.01	2.246	6.69	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.7	0.004	0.55	0.0	0.04	15.48	0.00	2.211	5.51	1.39	2.9	97.1	0.0	2.59	0.36	0.77	0.92	3.79	30616	3984	12	0	20	16	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	7UZU	26918	2023-04-20	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✘	7SQV	25396	2023-04-20	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4471	573	5	0	0	7	0	logfile
✔	6UVA	20906	2023-04-21	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✔	7XMU	33305	2023-04-23	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	8E3X	27872	2023-04-21	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.003	0.53	0.0	0.04	15.31	0.00	2.206	5.61	0.84	2.1	97.9	0.0	1.71	0.97	0.75	0.89	3.61	8979	1140	8	0	0	11	0	logfile
✔	7RXH	24731	2023-04-20	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.49	0.0	0.04	15.67	0.00	2.016	13.47	1.30	3.7	96.3	0.0	2.12	1.67	0.60	0.91	4.20	5631	626	1	0	18	24	48	logfile

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