Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XMU	33305	2023-04-23	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	7R47	14282	2023-04-25	2022-02-08	2.3	2.29	—	2.3	0.008	0.81	0.0	0.85	17.14	0.01	1.921	2.60	1.15	2.1	97.9	0.0	0.85	0.73	0.90	6.13	2.3	0.007	1.32	0.0	0.26	16.92	0.00	1.867	4.03	1.22	1.6	98.4	0.0	1.61	1.49	0.74	0.92	5.86	68578	8089	116	0	51	1836	0	logfile
✔	7UZU	26918	2023-04-20	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✔	8E3Y	27873	2023-04-21	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.54	0.0	0.04	15.61	0.00	2.222	8.10	0.42	1.9	98.1	0.0	1.94	0.80	0.74	0.88	4.23	8966	1139	8	0	0	14	0	logfile
✔	7RZU	24778	2023-04-19	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7MBQ	23741	2023-04-29	2021-04-01	2.3	3.00	—	2.6	0.003	0.59	0.0	0.04	15.27	0.01	2.246	6.69	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.7	0.004	0.55	0.0	0.04	15.48	0.00	2.211	5.51	1.39	2.9	97.1	0.0	2.59	0.36	0.77	0.92	3.79	30616	3984	12	0	20	16	0	logfile
✔	7QSM	14134	2023-04-26	2022-01-13	2.3	2.31	—	2.3	0.007	0.92	0.0	0.85	15.81	0.00	1.463	2.79	0.58	2.3	97.6	0.0	0.75	0.76	0.90	6.42	2.3	0.007	1.29	0.0	0.25	16.21	0.00	1.942	4.43	0.72	1.6	98.3	0.0	1.81	0.81	0.77	0.91	5.60	71640	8262	118	0	62	2774	0	logfile
✔	6KPK	0749	2023-04-22	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.004	0.73	1.0	0.13	14.36	0.00	1.954	5.48	0.66	3.8	96.2	0.0	0.92	0.75	0.83	0.89	4.27	62209	3936	24	0	24	0	31225	logfile
✔	7R41	14251	2023-04-26	2022-02-08	2.3	2.35	—	2.4	0.008	0.85	0.0	0.84	16.91	0.00	1.904	3.40	1.01	2.4	97.5	0.0	0.57	0.71	0.90	5.72	2.4	0.007	1.31	0.0	0.25	16.89	0.00	1.989	4.52	1.04	1.8	98.2	0.0	1.62	0.79	0.71	0.91	5.22	69138	8194	111	0	57	1307	0	logfile
✔	8E3X	27872	2023-04-21	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.003	0.53	0.0	0.04	15.31	0.00	2.206	5.61	0.84	2.1	97.9	0.0	1.71	0.97	0.75	0.89	3.61	8979	1140	8	0	0	11	0	logfile
✔	6ZK9	11241	2023-04-29	2020-06-30	2.3	2.55	—	2.4	0.008	1.05	0.0	1.58	10.47	0.01	2.257	5.07	0.07	3.2	96.8	0.0	-2.52	0.78	0.92	6.57	2.4	0.012	2.33	0.0	0.48	15.01	0.00	2.065	8.80	1.07	2.7	97.3	0.0	0.40	0.47	0.80	0.93	6.07	29587	3480	45	0	19	1472	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	8CXQ	27067	2023-04-20	2022-05-22	2.3	3.31	2.77	3.1	0.002	0.46	0.0	0.04	10.31	0.00	2.008	5.61	0.22	3.9	96.0	0.1	0.30	0.78	0.80	2.66	3.1	0.004	0.53	1.0	0.04	12.19	0.00	1.888	6.75	0.69	4.8	95.1	0.0	-0.13	0.39	0.73	0.76	2.52	56384	3666	6	0	0	0	27792	logfile
✔	7RXH	24731	2023-04-20	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.49	0.0	0.04	15.67	0.00	2.016	13.47	1.30	3.7	96.3	0.0	2.12	1.67	0.60	0.91	4.20	5631	626	1	0	18	24	48	logfile
✔	6Li9	0903	2023-04-24	2019-12-10	2.3	2.38	—	2.4	0.008	1.00	0.0	0.07	13.76	0.01	2.265	2.26	0.21	5.0	95.0	0.0	-4.31	0.63	0.75	4.03	2.4	0.003	0.78	0.0	0.05	16.26	0.00	2.101	7.08	1.27	3.8	96.2	0.0	0.04	1.68	0.69	0.84	3.89	17988	2164	22	0	26	246	0	logfile
✔	6KQ4	0750	2023-04-22	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.58	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.74	1.0	0.13	15.73	0.00	2.009	4.52	0.44	3.8	96.2	0.0	1.19	0.79	0.84	0.89	4.03	62206	3936	24	0	24	0	31222	logfile
✔	7SXT	25505	2023-04-27	2021-11-24	2.31	3.14	—	2.6	0.005	0.78	0.0	0.05	13.05	0.01	2.287	2.67	0.00	2.8	97.2	0.0	-0.67	0.84	0.83	2.91	2.6	0.005	0.63	0.0	0.05	14.73	0.00	2.176	7.33	0.80	2.4	97.6	0.0	0.49	1.18	0.85	0.87	3.08	25248	3120	24	0	60	0	0	logfile
✔	6VSA	21373	2023-04-21	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.59	0.0	0.04	17.37	0.00	2.166	11.48	1.74	0.4	99.5	0.1	1.16	1.15	0.93	0.90	4.49	9712	1175	10	0	0	42	0	logfile
✔	7SQ6	25377	2023-04-23	2021-11-04	2.32	2.12	—	2.3	0.006	0.78	0.0	0.06	16.59	0.00	2.408	4.99	0.00	2.8	97.2	0.0	1.57	0.69	0.88	4.86	2.3	0.003	0.56	0.0	0.04	16.68	0.00	2.225	3.43	2.57	1.6	98.4	0.0	2.19	0.92	0.70	0.90	4.55	15342	1868	16	0	14	12	0	logfile
✔	7UKH	26581	2023-04-22	2022-04-01	2.33	2.55	2.38	2.5	0.004	0.61	0.0	0.04	17.88	0.00	2.035	7.98	1.80	2.9	97.1	0.0	0.99	0.77	0.85	3.75	2.5	0.003	0.54	0.0	0.04	18.19	0.00	2.189	7.26	1.41	2.6	97.4	0.0	1.49	0.29	0.75	0.86	3.77	12340	1536	16	0	16	0	0	logfile

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