Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DRV	8908	2023-07-15	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	3.99	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.004	0.73	0.0	0.05	16.34	0.00	2.161	6.53	1.28	2.7	97.2	0.0	0.28	1.48	0.74	0.89	5.92	32888	4096	4	0	0	0	0	logfile
✔	7QER	13938	2023-07-09	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	7P8W	13256	2023-07-08	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	8DBF	27282	2023-07-14	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile
✔	7UZS	26917	2023-07-05	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.1	0.004	0.58	0.0	0.04	17.92	0.00	2.030	4.15	2.15	2.2	97.8	0.0	1.03	0.31	0.64	0.87	6.34	10550	658	1	0	0	193	5183	logfile
✔	5A1A	2984	2023-07-15	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.15	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.66	0.0	0.04	17.63	0.00	1.961	10.92	2.75	2.3	97.6	0.1	-0.56	1.09	0.53	0.79	3.86	33696	4088	12	0	20	776	0	logfile
✔	8GVK	32099	2023-07-03	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	7N06	24101	2023-07-08	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.52	0.0	0.05	16.56	0.00	2.105	3.80	0.92	1.5	98.5	0.0	0.44	1.11	0.84	0.90	6.25	17223	2082	21	18	0	555	0	logfile
✔	7ST9	25422	2023-07-19	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	16.91	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.010	0.65	0.0	0.04	17.49	0.00	1.694	4.39	1.35	1.4	98.6	0.0	2.03	2.70	0.82	0.86	3.68	46553	2802	25	36	9	423	22930	logfile
✘	7RiG	24479	2023-07-15	2021-07-19	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32804	4128	12	0	22	278	0	logfile
✔	7ZP8	14850	2023-07-15	2022-04-26	2.2	3.37	2.30	2.5	0.008	1.05	2.0	0.11	19.16	0.00	1.813	5.05	1.68	4.7	95.1	0.2	-0.45	0.78	0.87	4.53	2.5	0.006	0.60	0.0	0.04	15.32	0.00	2.067	7.69	1.33	4.7	95.2	0.1	0.15	1.62	0.80	0.93	4.07	90951	3145	32	3095	0	0	0	logfile
✔	8DBH	27284	2023-07-13	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	15.18	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.49	0.0	0.05	15.66	0.00	1.961	5.07	1.78	3.7	96.3	0.0	1.16	0.91	0.74	0.90	5.57	28884	3708	36	0	60	24	0	logfile
✔	7TYF	26178	2023-07-05	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.45	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.64	0.0	0.04	16.18	0.00	2.202	6.55	1.26	2.3	97.7	0.0	0.96	0.50	0.66	0.86	4.67	10331	1266	12	0	16	83	0	logfile
✔	8oUZ	17206	2023-07-07	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	15.86	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.56	0.0	0.04	16.21	0.00	1.752	5.24	2.00	3.8	96.2	0.0	0.75	0.47	0.73	0.79	4.31	14822	924	11	0	6	142	7373	logfile
✔	6WZ5	21970	2023-07-06	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.31	0.00	2.156	6.07	1.08	1.7	98.3	0.0	2.65	0.90	0.87	0.89	3.95	12443	774	10	306	0	0	0	logfile
✔	8G5C	29739	2023-07-07	2023-02-12	2.2	2.30	2.19	2.3	0.046	1.77	0.0	0.04	18.34	0.01	1.577	13.99	1.04	2.3	97.7	0.0	1.38	0.73	0.85	4.82	2.3	0.006	0.79	0.0	0.05	17.68	0.00	2.004	14.88	1.17	2.4	97.6	0.0	1.02	0.52	0.79	0.90	4.97	14873	1869	12	0	11	59	0	logfile
✘	7Q3L	13793	2023-07-10	2021-10-28	2.21	2.93	2.31	2.6	0.008	1.50	26.0	0.12	15.22	0.01	1.876	2.99	2.50	3.2	96.8	0.0	-1.25	0.81	0.86	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20470	2440	16	41	4	180	0	logfile
✔	7UW1	26822	2023-07-13	2022-05-02	2.21	2.62	—	2.4	0.011	0.64	1.0	0.04	15.45	0.02	1.976	4.30	1.92	2.1	97.7	0.2	0.86	0.92	0.93	4.76	2.4	0.008	0.71	0.0	0.05	15.56	0.01	1.822	4.35	2.83	2.8	97.1	0.2	0.75	0.74	0.92	0.94	4.71	137191	5510	57	4369	14	5	0	logfile
✔	7UVZ	26821	2023-07-14	2022-05-02	2.21	2.55	—	2.3	0.010	0.65	1.0	0.04	15.50	0.02	1.876	4.65	2.03	2.1	97.7	0.2	0.93	0.92	0.93	4.69	2.3	0.008	0.74	0.0	0.05	15.64	0.01	1.737	4.58	2.85	2.9	97.0	0.2	0.89	0.20	0.92	0.94	4.69	138943	5512	59	4453	13	5	0	logfile
✔	8A2U	15107	2023-07-07	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile

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