Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YHS	10809	2021-01-06	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.51	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.006	0.73	0.0	0.04	14.64	0.01	1.905	3.60	0.00	4.2	95.8	0.0	-0.97	0.25	0.79	0.88	4.27	83514	3069	34	2800	161	0	0	logfile
✔	6ZVH	11456	2021-01-06	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	15.50	0.01	1.992	4.93	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.005	0.66	0.0	0.04	15.21	0.00	1.926	8.93	0.02	8.5	91.4	0.2	-0.83	0.28	0.53	0.87	3.20	79014	5074	43	1815	33	0	0	logfile
✔	6WQ0	21867	2021-01-08	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.59	0.0	0.04	13.80	0.00	2.269	3.66	0.17	0.8	99.2	0.0	3.18	0.29	0.59	0.89	3.74	57467	6026	48	602	0	0	0	logfile
✔	6YPU	10869	2021-01-07	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	5.98	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.004	0.60	0.0	0.04	14.58	0.00	1.905	4.86	0.00	6.1	93.9	0.0	-0.79	0.31	0.78	0.84	2.99	33322	1496	17	1040	60	0	0	logfile
✔	6XEY	22156	2021-01-06	2020-06-14	3.25	3.61	2.92	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.59	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.003	0.55	0.0	0.04	12.56	0.00	2.143	6.78	0.00	4.8	95.2	0.1	-0.36	0.32	0.88	0.83	2.69	28482	3788	24	0	63	0	0	logfile
✔	6M54	30084	2021-01-07	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.003	0.62	0.0	0.04	16.75	0.00	2.345	0.80	0.17	4.0	96.0	0.0	3.90	0.33	0.81	0.89	3.74	33382	4104	38	0	6	8	0	logfile
✔	6WQQ	21873	2021-01-06	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	14.51	0.00	2.203	3.53	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.009	0.98	0.0	0.05	16.65	0.01	1.876	6.05	0.04	8.8	91.2	0.0	-3.19	0.34	0.74	0.81	3.33	81134	2671	28	2809	1	0	0	logfile
✔	6XS6	22301	2021-01-06	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.002	0.56	0.0	0.04	14.30	0.00	2.198	7.68	0.10	4.5	95.5	0.0	-0.81	0.34	0.57	0.58	2.03	18294	2357	3	0	0	0	0	logfile
✔	6U3Q	20630	2021-01-18	2019-08-22	2.46	3.11	—	2.8	0.009	0.61	0.0	0.04	12.86	0.00	2.189	3.45	4.15	3.1	96.9	0.0	-1.52	0.80	0.92	5.73	2.8	0.004	0.53	0.0	0.04	14.23	0.00	2.155	4.34	2.04	2.3	97.7	0.0	-0.37	0.35	0.80	0.92	5.20	248280	31140	60	0	0	0	0	logfile
✔	6o0Y	0584	2021-01-05	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	3.7	0.004	0.54	0.0	0.04	16.14	0.00	2.079	5.60	0.00	4.3	95.7	0.0	0.16	0.35	0.85	0.87	2.62	11828	1146	5	150	0	0	0	logfile
✔	6AZ3	7025	2021-01-08	2017-09-09	2.5	3.08	—	3.1	0.011	1.19	0.0	0.06	16.54	0.03	1.349	4.52	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.005	0.83	0.0	0.04	17.25	0.01	1.975	8.69	2.96	6.3	93.6	0.1	-1.37	0.35	0.55	0.79	3.81	126561	6390	91	3507	44	1019	0	logfile
✔	6YY0	11001	2021-01-08	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.69	0.0	0.04	15.27	0.00	1.847	8.05	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.004	0.57	0.0	0.04	15.04	0.00	1.772	6.19	0.00	5.0	95.0	0.0	0.32	0.35	0.73	0.84	2.80	61162	3926	25	0	11	17	30826	logfile
✔	6U48	20638	2021-01-06	2019-08-23	2.87	2.54	2.82	2.8	0.007	0.95	3.0	0.05	14.18	0.02	1.331	3.47	0.74	6.2	93.3	0.4	-3.65	0.49	0.75	3.87	2.8	0.005	0.75	3.0	0.04	14.30	0.01	2.026	7.50	0.04	7.0	92.7	0.2	-1.74	0.36	0.52	0.72	3.49	90950	3374	32	3016	4	0	0	logfile
✔	6TQF	10550	2021-01-05	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.002	0.57	0.0	0.04	13.86	0.00	2.054	2.29	0.00	2.8	97.2	0.0	-3.30	0.37	0.73	0.89	2.69	10426	1268	4	0	14	0	0	logfile
✔	6o0Z	0585	2021-01-05	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.47	0.0	0.03	15.73	0.00	2.149	4.26	0.00	5.3	94.7	0.0	0.13	0.37	0.85	0.87	3.52	11912	1288	4	135	0	0	0	logfile
✔	6ZG7	11195	2021-01-06	2020-06-18	3.49	3.18	3.39	3.4	0.006	0.64	0.0	0.04	14.31	0.00	2.002	9.98	0.00	4.8	95.2	0.0	-0.07	0.54	0.78	2.53	3.4	0.004	0.56	0.0	0.04	14.40	0.00	1.905	8.13	0.00	4.0	95.9	0.1	0.76	0.37	0.53	0.77	2.40	15587	1048	11	0	0	0	7852	logfile
✔	6V93	21115	2021-01-06	2019-12-13	3.1	3.37	—	3.3	0.006	0.74	0.0	0.75	12.61	0.00	2.117	5.76	0.00	7.0	93.0	0.0	-2.84	0.78	0.84	3.32	3.3	0.007	1.29	0.0	0.24	13.58	0.00	2.082	6.67	0.06	7.4	92.6	0.0	-0.31	0.38	0.79	0.84	3.45	18105	2198	14	26	4	220	0	logfile
✔	6CVM	7770	2021-01-07	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.93	0.0	0.07	10.11	0.01	2.053	3.57	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.003	0.58	0.0	0.04	13.78	0.00	2.040	6.14	0.60	2.6	97.4	0.0	0.70	0.38	0.84	0.92	6.84	37062	4084	12	0	20	4194	0	logfile
✔	6UPH	20839	2021-01-05	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.004	0.61	0.0	0.04	26.54	0.00	2.106	4.33	0.16	0.4	99.6	0.0	1.12	0.38	0.68	0.86	3.12	10677	732	10	238	0	0	0	logfile
✔	6LQM	0948	2021-01-11	2020-01-14	3.09	3.18	—	3.1	0.016	1.27	3.0	0.07	17.29	0.03	1.296	4.28	1.60	7.4	92.4	0.2	-3.93	0.83	0.85	3.33	3.1	0.011	1.03	0.0	0.05	17.12	0.01	1.177	9.26	0.07	8.1	91.8	0.1	-1.91	0.38	0.83	0.86	3.48	139464	7108	53	3808	251	0	0	logfile

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