Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R6L	24281	2023-08-10	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7PM4	13520	2023-08-13	2021-09-01	2.49	2.26	—	2.5	0.003	0.55	0.0	0.04	16.98	0.00	2.237	4.75	1.06	4.9	95.1	0.0	0.76	0.79	0.88	5.85	2.5	0.003	0.53	0.0	0.04	16.71	0.00	2.255	3.88	1.33	5.4	94.6	0.0	0.82	0.12	0.80	0.90	5.93	14288	1724	12	0	8	60	0	logfile
✔	7T2E	25611	2023-08-09	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	8H2T	34443	2023-08-13	2022-10-07	2.59	3.14	2.68	3.0	0.003	0.59	0.0	0.04	16.32	0.00	2.043	5.51	1.52	3.0	96.9	0.1	0.43	0.76	0.86	4.68	3.0	0.004	0.60	0.0	0.04	16.57	0.00	2.010	5.76	1.45	3.2	96.7	0.2	0.41	0.14	0.76	0.86	4.70	14370	1776	9	0	9	0	0	logfile
✔	8GCC	29930	2023-08-17	2023-03-01	2.94	3.15	2.96	3.1	0.007	1.04	0.0	0.04	19.90	0.00	1.942	4.30	2.54	3.6	96.4	0.0	1.52	0.73	0.85	3.48	3.1	0.004	0.74	0.0	0.04	19.97	0.00	1.934	4.52	2.74	3.9	96.1	0.0	1.51	0.14	0.69	0.83	3.35	22336	1414	6	48	2	0	10631	logfile
✔	7Y15	33557	2023-08-10	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.002	0.52	0.0	0.04	16.54	0.00	2.250	8.35	3.26	1.8	98.2	0.0	1.41	0.16	0.67	0.85	3.38	8495	1109	6	0	3	0	0	logfile
✔	7UZE	26886	2023-08-14	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	15.32	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.88	6.32	2.3	0.002	0.51	0.0	0.04	14.96	0.00	2.086	5.01	0.95	3.2	96.4	0.4	1.42	0.16	0.65	0.87	6.36	14969	988	12	0	4	113	7392	logfile
✔	7YGA	33813	2023-08-10	2022-07-11	2.35	3.08	2.44	2.8	0.008	0.62	0.0	0.04	15.23	0.01	1.779	10.87	0.00	0.0	0.0	0.0	—	0.89	0.87	—	2.8	0.007	0.60	0.0	0.04	15.25	0.00	1.826	12.63	0.00	0.0	0.0	0.0	—	0.16	0.89	0.88	—	8692	0	3	407	8	0	0	logfile
✔	7XY9	33514	2023-08-12	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.67	0.0	0.05	17.41	0.01	1.873	5.07	1.95	4.2	95.8	0.0	-0.09	0.16	0.75	0.87	5.58	10962	1376	12	0	12	574	0	logfile
✔	8AoV	15553	2023-08-25	2022-08-08	2.48	2.62	2.54	2.6	0.003	0.57	0.0	0.04	16.27	0.00	2.044	8.08	2.01	3.0	97.0	0.0	-0.35	0.74	0.84	3.85	2.6	0.002	0.52	0.0	0.04	16.42	0.00	2.070	7.50	2.65	2.5	97.5	0.0	-0.06	0.17	0.73	0.82	3.77	42900	5352	36	0	24	228	0	logfile
✔	7UVY	26820	2023-08-22	2022-05-02	2.39	2.77	—	2.6	0.011	0.70	0.0	0.04	15.79	0.02	1.926	4.93	2.41	2.5	97.2	0.2	0.67	0.92	0.93	4.40	2.6	0.006	0.67	0.0	0.04	15.67	0.01	1.760	4.88	2.92	3.0	96.8	0.2	0.70	0.17	0.92	0.94	4.27	138881	5512	60	4447	14	5	0	logfile
✔	8G0L	29657	2023-08-10	2023-01-31	3.39	4.48	3.47	3.9	0.003	0.48	0.0	0.03	16.92	0.00	2.289	5.58	0.10	2.0	98.0	0.0	3.32	0.93	0.90	2.06	3.9	0.002	0.48	0.0	0.03	17.10	0.00	2.248	5.69	0.10	2.0	98.0	0.0	3.31	0.18	0.93	0.90	2.07	8872	1088	3	0	1	0	0	logfile
✔	7UZU	26918	2023-08-10	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✔	7T6E	25714	2023-08-09	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	125.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	134.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	7ZZ0	15030	2023-08-09	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.72	0.00	2.106	5.73	1.96	1.5	98.5	0.0	1.21	0.19	0.92	0.91	4.56	4387	541	1	0	2	84	0	logfile
✔	7TYJ	26181	2023-08-09	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.4	0.002	0.57	0.0	0.04	16.76	0.00	2.272	7.32	0.15	9.4	90.5	0.1	-1.74	0.19	0.67	0.82	2.95	6338	808	2	0	0	0	0	logfile
✔	7R6M	24282	2023-08-10	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7PX8	13691	2023-08-16	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.50	0.0	0.04	13.58	0.00	2.215	3.84	0.27	2.6	97.4	0.0	0.04	0.19	0.80	0.88	3.41	21409	2798	4	0	0	0	0	logfile
✔	8EPX	28534	2023-08-14	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.02	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.003	0.52	0.0	0.04	23.72	0.00	2.168	6.87	0.36	5.7	94.3	0.0	0.33	0.20	0.79	0.84	0.96	15457	1672	14	144	2	0	0	logfile
✔	7Y6P	33645	2023-08-21	2022-06-21	3.3	3.20	3.21	3.3	0.005	0.66	0.0	0.04	15.54	0.00	1.892	8.44	0.00	2.3	97.7	0.0	3.78	0.77	0.89	3.18	3.3	0.005	0.69	0.0	0.03	16.67	0.00	2.091	3.58	0.36	2.0	98.0	0.0	4.44	0.20	0.76	0.90	2.29	31428	3772	48	0	60	0	0	logfile

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