Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R6L	24281	2022-07-03	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.64	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7NKJ	12441	2022-07-07	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7K3W	22658	2022-07-07	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.63	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.97	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7PX8	13691	2022-07-05	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.79	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.009	0.95	0.0	0.04	13.83	0.01	2.211	3.96	0.18	2.7	97.3	0.0	-0.21	0.19	0.79	0.87	3.68	21409	2798	4	0	0	0	0	logfile
✔	7R6M	24282	2022-07-03	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7ZGP	14710	2022-07-04	2022-04-04	2.7	2.79	2.57	2.8	0.003	0.58	0.0	0.05	14.54	0.00	2.175	10.64	0.96	6.3	93.5	0.2	-0.84	0.79	0.91	5.10	2.8	0.003	0.55	0.0	0.05	15.54	0.00	2.108	9.78	1.61	7.1	92.9	0.0	-1.14	0.21	0.80	0.91	4.73	14055	1767	6	4	2	0	0	logfile
✔	7NSB	12563	2022-07-03	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.37	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.011	1.14	1.0	0.04	14.74	0.01	1.921	11.58	0.07	13.6	86.2	0.1	-1.91	0.21	0.74	0.82	2.32	13474	1775	4	0	0	0	0	logfile
✔	6YHS	10809	2022-07-05	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.64	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.005	0.63	0.0	0.04	15.44	0.00	1.885	3.92	4.76	4.3	95.7	0.0	-0.63	0.21	0.79	0.88	3.62	83514	3069	34	2800	161	0	0	logfile
✔	7MGM	23829	2022-07-05	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	6.13	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.43	0.0	0.04	14.90	0.00	1.981	5.99	0.07	1.8	98.2	0.0	1.66	0.21	0.87	0.90	2.25	24079	2964	4	0	6	0	0	logfile
✔	8D0B	27104	2022-07-06	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.50	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.003	0.51	0.0	0.04	15.95	0.00	2.167	6.18	0.06	3.8	96.1	0.0	1.28	0.21	0.87	0.83	1.73	29367	3630	8	15	0	0	0	logfile
✔	7NK7	12432	2022-07-07	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.65	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.54	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.91	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7LGU	23329	2022-07-03	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.32	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.002	0.45	0.0	0.04	14.54	0.00	2.136	5.26	0.71	1.8	98.2	0.0	1.55	0.22	0.64	0.85	5.47	11597	1360	6	0	110	111	0	logfile
✔	7DD9	30650	2022-07-07	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.82	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.004	0.64	0.0	0.05	16.22	0.00	1.945	9.56	2.10	6.2	93.8	0.0	-0.98	0.22	0.80	0.88	4.84	37149	4516	12	0	12	949	0	logfile
✔	7VD8	31910	2022-07-07	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7ZGR	14712	2022-07-04	2022-04-04	2.6	3.01	2.54	2.8	0.003	0.56	0.0	0.05	14.68	0.00	2.181	8.81	1.24	5.7	94.1	0.2	-0.53	0.82	0.92	4.71	2.8	0.003	0.57	0.0	0.05	15.46	0.00	2.181	9.16	2.42	6.1	93.8	0.2	-0.82	0.23	0.82	0.92	4.70	14505	1819	7	4	2	0	0	logfile
✔	7UB0	26433	2022-07-05	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7NKH	12439	2022-07-07	2021-02-18	2.78	2.86	—	2.8	0.002	0.50	0.0	0.04	14.54	0.00	2.013	3.97	0.00	2.1	97.8	0.1	1.32	0.84	0.88	4.82	2.8	0.004	0.51	0.0	0.04	15.32	0.00	1.731	4.04	0.21	2.1	97.9	0.1	1.28	0.23	0.84	0.89	4.67	45277	2959	18	0	11	16	22565	logfile
✔	7A7C	11677	2022-07-03	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.79	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.005	0.55	0.0	0.04	14.63	0.00	2.108	6.90	0.11	5.1	94.9	0.0	-0.29	0.24	0.83	0.89	3.27	9387	1226	2	0	1	0	0	logfile
✔	7NJS	12417	2022-07-05	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.15	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.664	4.77	1.59	2.5	97.5	0.0	1.80	0.24	0.86	0.90	4.20	74642	4932	31	0	11	16	37346	logfile
✔	7RZT	24777	2022-07-02	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.82	3.03	2451	324	6	0	0	0	0	logfile

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