Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K3V	22657	2021-05-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.004	0.80	0.0	0.04	14.89	0.01	2.009	2.36	0.00	1.2	98.8	0.0	4.04	0.21	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	6YHS	10809	2021-05-04	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.51	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.004	0.63	0.0	0.04	15.48	0.00	1.926	3.81	4.50	4.7	95.3	0.0	-0.75	0.22	0.79	0.89	3.72	83514	3069	34	2800	161	0	0	logfile
✔	7A7C	11677	2021-05-03	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.52	0.0	0.04	14.73	0.00	2.067	6.79	0.11	4.4	95.6	0.0	-0.07	0.25	0.82	0.87	3.17	9387	1226	2	0	1	0	0	logfile
✔	7D77	30603	2021-05-03	2020-10-03	2.9	3.25	—	3.2	0.041	1.24	0.0	0.24	13.60	0.01	2.107	8.37	0.21	3.7	96.3	0.0	-2.58	0.62	0.80	4.03	3.2	0.004	0.87	0.0	0.06	15.74	0.00	2.089	13.17	0.64	3.3	96.6	0.1	-1.62	0.25	0.61	0.80	3.79	8785	1105	7	0	7	1	0	logfile
✔	6YT9	10914	2021-05-06	2020-04-24	2.7	2.80	2.64	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.48	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.003	0.55	0.0	0.03	15.95	0.00	1.914	7.84	4.71	5.3	94.7	0.0	-0.07	0.26	0.83	0.88	2.81	33279	1496	17	1040	56	0	0	logfile
✔	7K5i	22681	2021-05-04	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.78	0.01	2.031	6.50	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.006	0.74	0.0	0.05	17.09	0.01	2.050	7.08	2.38	4.4	95.5	0.0	-0.52	0.27	0.78	0.85	3.13	74540	4881	40	1665	4	0	0	logfile
✔	6S3Q	10094	2021-05-03	2019-06-25	3.34	3.45	3.28	3.4	0.049	1.89	0.0	0.29	13.97	0.01	2.383	2.50	0.57	4.3	95.4	0.2	-4.53	0.66	0.86	2.79	3.4	0.004	0.95	0.0	0.08	15.59	0.00	2.314	10.97	0.00	3.3	96.7	0.0	-1.17	0.27	0.65	0.85	2.14	10290	1290	6	0	21	0	0	logfile
✔	6YPU	10869	2021-05-06	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	5.98	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.004	0.60	0.0	0.04	15.86	0.00	1.909	4.95	7.92	6.2	93.8	0.0	-0.91	0.28	0.79	0.88	2.34	33322	1496	17	1040	60	0	0	logfile
✔	7K0i	22598	2021-05-04	2020-09-04	3.3	3.75	—	3.7	0.006	0.63	0.0	0.05	13.11	0.00	2.222	6.19	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.004	0.55	0.0	0.04	14.34	0.00	2.238	5.80	0.37	4.0	96.0	0.0	0.40	0.29	0.71	0.81	2.36	15366	1954	10	0	6	0	0	logfile
✔	6UZA	20954	2021-05-05	2019-11-14	3.08	3.47	—	3.4	0.052	1.85	0.0	0.34	15.95	0.01	2.338	2.59	0.00	4.1	95.9	0.0	-3.92	0.70	0.87	3.55	3.4	0.004	1.04	0.0	0.10	17.18	0.01	2.333	11.70	0.35	4.3	95.7	0.0	-2.47	0.29	0.70	0.88	3.44	23284	2936	8	0	20	0	0	logfile
✔	6PCT	20307	2021-05-04	2019-06-18	2.8	3.01	—	2.9	0.015	0.62	2.0	0.03	12.90	0.02	1.891	2.94	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.68	0.0	0.03	14.20	0.01	1.984	8.43	2.76	5.7	94.1	0.2	-1.72	0.31	0.67	0.88	4.45	72198	964	8	3015	1	0	0	logfile
✔	6K7L	9939	2021-05-04	2019-06-07	2.83	2.93	2.81	2.9	0.030	1.43	0.0	0.18	15.52	0.01	1.976	4.79	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	2.9	0.004	0.86	0.0	0.06	16.62	0.01	2.032	11.84	0.35	7.0	92.9	0.2	-2.01	0.31	0.65	0.87	3.32	10615	1317	4	0	8	0	0	logfile
✔	6K7i	9934	2021-05-04	2019-06-07	3.22	3.34	3.11	3.3	0.031	1.58	0.0	0.18	15.17	0.01	2.253	6.02	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.005	0.92	0.0	0.06	16.28	0.01	2.167	12.80	0.43	8.4	91.4	0.2	-2.97	0.31	0.64	0.86	3.51	10590	1310	4	0	7	0	0	logfile
✔	7K0P	22606	2021-05-04	2020-09-04	3.1	3.68	—	3.6	0.006	0.77	0.0	0.04	14.41	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.002	0.48	0.0	0.04	15.17	0.00	2.165	5.19	0.21	2.0	98.0	0.0	1.57	0.31	0.69	0.82	2.59	18572	2342	14	0	15	0	0	logfile
✔	6X16	21990	2021-05-03	2020-05-18	3.39	3.34	—	3.4	0.005	0.98	0.0	0.05	15.14	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.003	0.57	0.0	0.04	15.55	0.00	2.188	8.60	0.21	3.6	96.4	0.0	0.73	0.31	0.40	0.73	1.41	9438	1248	6	0	6	0	0	logfile
✔	6o0Y	0584	2021-05-04	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	3.7	0.003	0.54	0.0	0.04	16.89	0.00	2.087	6.10	0.00	4.6	95.4	0.0	-0.13	0.31	0.85	0.88	2.48	11828	1146	5	150	0	0	0	logfile
✔	7D6V	30594	2021-05-03	2020-10-02	2.53	2.74	—	2.7	0.008	1.14	2.0	0.08	14.79	0.01	2.186	9.22	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.003	0.61	1.0	0.04	16.28	0.01	2.195	7.55	1.32	8.4	91.5	0.1	-0.03	0.31	0.71	0.88	4.03	8793	1104	6	0	7	0	0	logfile
✔	7JRG	22445	2021-05-06	2020-08-12	3.2	3.47	3.19	3.3	0.009	0.85	0.0	0.23	14.73	0.00	2.045	10.03	0.09	6.8	93.1	0.1	0.25	0.79	0.88	2.78	3.3	0.003	0.59	0.0	0.04	15.70	0.00	2.106	7.40	0.06	5.4	94.6	0.0	1.13	0.31	0.77	0.88	1.95	32930	3983	30	0	37	0	0	logfile
✔	6M54	30084	2021-05-06	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.68	0.0	0.04	16.69	0.00	2.353	0.97	0.48	3.8	96.2	0.0	3.75	0.32	0.75	0.87	3.59	33382	4104	38	0	6	8	0	logfile
✔	6K7H	9932	2021-05-04	2019-06-07	3.22	3.37	3.03	3.3	0.029	1.41	0.0	0.18	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.006	0.97	0.0	0.06	16.64	0.01	2.220	12.15	0.52	6.6	93.4	0.0	-2.84	0.32	0.65	0.87	3.14	10577	1312	2	0	6	0	0	logfile

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