Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VQQ	32092	2022-04-04	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.49	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	6YN5	10849	2022-04-04	2020-04-10	2.7	2.87	2.79	2.8	0.007	0.80	0.0	0.05	11.66	0.01	2.247	3.71	0.03	1.9	98.1	0.0	-0.33	0.84	0.88	4.96	2.8	0.004	0.55	0.0	0.04	13.63	0.00	2.168	6.08	0.95	1.5	98.5	0.0	0.82	0.28	0.85	0.90	4.35	56994	7110	10	0	0	0	0	logfile
✔	7NWT	12635	2022-04-13	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	14.15	0.02	1.145	4.87	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.003	0.66	0.0	0.04	15.21	0.01	1.109	7.18	2.74	3.3	96.7	0.0	0.04	0.28	0.86	0.86	3.54	149932	6355	74	4641	439	2	0	logfile
✔	6YT9	10914	2022-04-08	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.52	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.006	0.62	0.0	0.04	16.03	0.00	1.843	7.59	4.41	6.2	93.8	0.0	-0.19	0.28	0.83	0.88	2.66	33279	1496	17	1040	56	0	0	logfile
✔	7V7G	31770	2022-04-07	2021-08-21	3.1	3.93	—	3.3	0.003	0.55	0.0	0.05	13.62	0.00	2.168	7.81	0.04	5.6	94.3	0.1	-0.14	0.87	0.85	2.49	3.3	0.003	0.53	0.0	0.05	15.09	0.00	2.198	8.13	0.15	4.7	95.2	0.1	-0.05	0.28	0.87	0.85	2.07	25461	3114	39	0	81	0	0	logfile
✔	7LYC	23592	2022-04-06	2021-03-06	2.94	3.08	2.92	3.1	0.006	0.65	0.0	0.04	25.88	0.00	1.314	6.99	0.10	2.2	97.8	0.0	-0.02	0.73	0.82	3.48	3.1	0.004	0.57	0.0	0.04	26.45	0.00	2.178	7.55	1.18	2.8	97.2	0.0	1.50	0.29	0.73	0.84	3.20	15475	1188	12	293	0	0	0	logfile
✔	7VD9	31911	2022-04-05	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.24	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7VBM	31882	2022-04-05	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.60	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.92	0.00	2.190	6.74	0.00	1.8	98.2	0.0	2.72	0.29	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7BC6	12140	2022-04-04	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.66	0.0	0.04	15.30	0.00	2.196	8.33	0.00	4.4	95.6	0.0	0.23	0.29	0.59	0.84	1.92	4178	549	2	0	0	0	0	logfile
✔	7K0P	22606	2022-04-06	2020-09-04	3.1	3.68	—	3.6	0.005	0.71	0.0	0.04	13.66	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.008	0.62	0.0	0.04	14.95	0.00	2.065	4.97	0.16	2.2	97.8	0.0	1.28	0.29	0.70	0.84	2.70	18572	2342	14	0	15	0	0	logfile
✔	6ZVK	11459	2022-04-25	2020-07-24	3.49	3.88	—	3.8	0.006	0.85	1.0	0.04	18.19	0.01	1.992	15.96	0.67	10.6	89.2	0.2	-3.43	0.66	0.79	2.06	3.8	0.007	0.80	3.0	0.04	18.45	0.01	1.565	15.17	0.22	9.9	89.9	0.2	-2.46	0.29	0.66	0.80	1.48	228291	11850	91	6218	6	0	0	logfile
✔	7MR2	23954	2022-04-05	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.71	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.57	0.0	0.04	14.89	0.00	2.164	9.67	0.00	4.6	95.4	0.0	0.12	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7E8D	31015	2022-04-05	2021-03-01	2.8	3.12	—	3.0	0.011	0.72	0.0	0.05	28.84	0.00	2.070	7.62	1.95	5.1	94.8	0.1	-0.71	0.83	0.87	3.74	2.9	0.003	0.61	0.0	0.04	29.13	0.00	2.106	8.78	1.22	3.6	96.4	0.0	1.02	0.29	0.85	0.89	3.21	14852	983	11	344	4	0	0	logfile
✔	7RYH	24740	2022-04-08	2021-08-25	2.43	1.94	—	2.2	0.005	0.63	0.0	0.07	15.90	0.02	1.844	3.77	2.55	2.2	97.7	0.1	1.17	0.77	0.74	2.99	1.6	0.005	0.78	0.0	0.05	16.18	0.01	1.851	5.53	4.94	2.7	97.1	0.1	0.53	0.29	0.78	0.76	3.01	135829	5499	53	4328	8	0	0	logfile
✔	7E26	30952	2022-04-05	2021-02-04	2.29	2.97	—	2.9	0.009	0.93	0.0	0.06	14.05	0.01	2.312	2.69	1.19	1.5	98.5	0.0	-2.93	0.73	0.88	5.43	2.9	0.003	0.54	0.0	0.04	15.99	0.00	2.201	4.15	1.53	1.9	98.1	0.0	1.55	0.29	0.54	0.81	5.02	11360	1435	10	0	0	80	0	logfile
✔	7V7S	31780	2022-04-07	2021-08-21	3.0	3.84	—	3.3	0.003	0.52	0.0	0.04	13.55	0.00	2.197	7.39	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.005	0.57	0.0	0.04	14.94	0.00	2.156	7.79	1.04	4.9	95.0	0.0	0.26	0.29	0.87	0.86	1.94	25255	3088	39	0	81	0	0	logfile
✔	7V7F	31769	2022-04-07	2021-08-21	2.9	3.82	—	3.2	0.004	0.56	0.0	0.05	13.42	0.00	2.061	7.24	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.005	0.58	0.0	0.05	14.94	0.00	2.108	8.16	1.51	5.7	94.2	0.1	-0.14	0.29	0.89	0.87	2.25	25503	3114	42	0	84	0	0	logfile
✔	7S8P	24900	2022-04-04	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.84	0.84	4.19	8093	1089	5	0	1	0	0	logfile
✔	7MR3	23955	2022-04-06	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.39	0.01	2.250	5.31	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.003	0.60	0.0	0.04	17.80	0.00	2.195	9.30	0.21	6.3	93.7	0.0	0.14	0.29	0.83	0.83	1.50	23615	2854	5	40	0	0	0	logfile
✔	7RTU	24689	2022-04-04	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.03	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.11	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile

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