Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B3J	15830	2023-07-03	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.57	0.0	0.04	16.23	0.00	2.139	6.53	0.00	6.9	93.1	0.0	-2.36	0.23	0.44	0.87	2.72	5688	718	3	0	0	0	0	logfile
✔	7ZGR	14712	2023-07-07	2022-04-04	2.6	3.01	2.54	2.8	0.003	0.56	0.0	0.05	14.68	0.00	2.181	8.43	1.24	5.7	94.1	0.2	-0.53	0.82	0.92	4.71	2.8	0.002	0.56	0.0	0.05	15.46	0.00	2.192	8.78	2.36	5.9	93.9	0.2	-0.75	0.23	0.82	0.92	4.54	14505	1819	7	4	2	0	0	logfile
✔	7ZD6	14637	2023-07-07	2022-03-29	3.16	3.35	—	3.2	0.006	0.80	0.0	1.03	15.78	0.01	2.184	4.32	0.27	3.1	96.9	0.0	-0.24	0.93	0.91	2.61	3.2	0.008	1.56	0.0	0.31	15.86	0.00	2.070	6.34	0.13	3.1	96.9	0.0	1.17	0.23	0.92	0.90	2.50	66748	8160	63	0	38	0	0	logfile
✔	7A7C	11677	2023-07-05	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.53	0.0	0.04	14.65	0.00	2.119	6.63	0.11	4.2	95.8	0.0	-0.08	0.24	0.82	0.88	3.29	9387	1226	2	0	1	0	0	logfile
✔	8ADi	15363	2023-07-11	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✔	7NL0	12453	2023-07-06	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.61	0.0	0.03	29.99	0.00	2.219	10.71	0.00	3.0	97.0	0.0	2.21	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	6YT9	10914	2023-07-15	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.52	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.007	0.66	0.0	0.04	16.18	0.00	1.828	7.37	5.31	6.3	93.7	0.0	-0.54	0.24	0.84	0.90	2.79	33279	1496	17	1040	56	0	0	logfile
✔	7Y12	33554	2023-07-04	2022-06-06	3.1	2.87	3.11	3.0	0.003	0.58	1.0	0.04	15.81	0.00	2.086	9.89	0.22	3.4	96.6	0.0	0.86	0.62	0.78	2.84	3.0	0.003	0.56	1.0	0.04	16.38	0.00	2.105	10.90	0.45	3.5	96.5	0.0	0.76	0.24	0.61	0.79	2.71	8501	1110	6	0	3	0	0	logfile
✔	7V2L	31655	2023-07-03	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.003	0.56	0.0	0.03	16.73	0.00	2.080	8.24	0.32	7.0	92.9	0.1	-0.28	0.24	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	7RZT	24777	2023-07-03	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7T4N	25681	2023-07-04	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7UWM	26836	2023-07-04	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	18.27	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.57	0.0	0.04	18.46	0.00	2.122	7.90	4.39	3.5	96.5	0.0	-0.58	0.24	0.80	0.79	2.46	7972	967	9	0	9	0	0	logfile
✔	7K3W	22658	2023-07-17	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✔	7UPD	26662	2023-07-08	2022-04-14	2.4	2.56	2.38	2.5	0.003	0.57	0.0	0.05	15.86	0.00	2.222	1.74	1.18	1.7	98.3	0.0	0.86	0.78	0.89	5.05	2.5	0.003	0.60	0.0	0.05	16.61	0.00	2.105	2.06	2.09	1.8	98.2	0.0	0.82	0.24	0.78	0.90	4.97	15801	2016	12	0	12	0	0	logfile
✔	7YSU	34082	2023-07-06	2022-08-13	3.2	3.84	3.33	3.7	0.005	0.94	0.0	0.22	16.45	0.01	2.065	11.09	0.31	6.4	93.6	0.0	-2.08	0.73	0.76	2.52	3.7	0.003	0.62	0.0	0.04	16.94	0.00	1.990	12.28	0.31	6.7	93.3	0.0	-1.49	0.24	0.74	0.78	2.53	12430	1521	7	0	12	0	0	logfile
✔	7SZi	25567	2023-07-04	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	7ZZ6	15036	2023-07-04	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.004	0.61	0.0	0.04	17.09	0.00	1.999	8.27	3.14	3.0	97.0	0.0	0.69	0.24	0.93	0.92	4.82	8257	1017	6	0	6	157	0	logfile
✔	7UZQ	26916	2023-07-10	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.32	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	7NJS	12417	2023-07-12	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.675	4.83	1.64	2.6	97.4	0.0	1.82	0.24	0.86	0.90	4.19	74642	4932	31	0	11	16	37346	logfile
✔	8GH9	40038	2023-07-12	2023-03-09	3.8	4.28	4.07	4.2	0.004	0.75	0.0	0.05	17.39	0.00	2.171	9.31	0.37	7.1	92.9	0.0	-1.54	0.70	0.80	0.97	4.2	0.005	0.72	0.0	0.04	17.50	0.00	2.075	13.87	0.70	8.7	91.3	0.0	-1.22	0.24	0.71	0.81	1.30	27066	3389	4	0	0	0	0	logfile

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