Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VXU	32188	2022-12-15	2021-11-13	2.8	2.93	—	3.3	0.006	0.69	0.0	0.05	16.30	0.01	2.193	10.77	1.34	3.2	96.8	0.0	0.49	0.72	0.87	3.33	3.3	0.003	0.54	0.0	0.04	16.61	0.00	2.183	8.85	1.97	3.3	96.7	0.0	0.61	0.27	0.71	0.87	3.08	27965	3488	27	0	16	0	0	logfile
✔	7RXB	24727	2022-12-12	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	14.60	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.53	0.0	0.04	14.50	0.00	2.378	2.10	0.25	5.3	94.7	0.0	-0.04	0.27	0.64	0.88	3.11	8506	1096	4	0	8	0	0	logfile
✔	7Z7T	14537	2022-12-19	2022-03-16	3.1	2.49	—	3.0	0.005	0.76	0.0	1.47	16.71	0.01	2.217	7.72	0.23	2.2	97.8	0.1	-0.38	0.79	0.87	2.91	3.0	0.012	2.18	0.0	0.44	16.79	0.00	2.132	12.24	0.29	2.4	97.6	0.0	0.85	0.27	0.79	0.86	3.09	37395	4721	23	0	23	0	0	logfile
✔	7V7R	31779	2022-12-15	2021-08-21	2.9	3.74	—	3.2	0.003	0.54	0.0	0.04	13.33	0.00	2.163	6.36	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.005	0.59	0.0	0.04	14.60	0.00	2.144	7.28	1.11	4.9	95.0	0.1	0.20	0.27	0.88	0.87	2.29	25362	3095	42	0	84	0	0	logfile
✔	7QUR	14152	2022-12-15	2022-01-18	2.27	2.80	—	2.7	0.004	0.62	0.0	0.05	15.55	0.00	2.145	5.02	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.004	0.57	0.0	0.05	15.47	0.00	2.064	4.00	1.11	4.2	95.6	0.2	-0.26	0.27	0.65	0.84	5.02	27174	3303	21	0	75	282	0	logfile
✔	7K5i	22681	2022-12-15	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.79	0.01	2.031	6.60	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	2.9	0.007	0.76	0.0	0.05	17.06	0.01	2.056	7.24	2.35	4.5	95.4	0.0	-0.64	0.27	0.79	0.84	3.14	74540	4881	40	1665	4	0	0	logfile
✔	7oP1	13011	2022-12-12	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.17	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.004	0.56	0.0	0.04	15.04	0.00	1.669	5.23	0.10	3.9	96.1	0.0	0.30	0.27	0.69	0.86	1.61	8744	1098	1	0	3	0	0	logfile
✔	8D8o	27253	2022-12-12	2022-06-08	3.35	3.59	3.31	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.80	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.006	0.63	0.0	0.05	16.24	0.00	2.124	8.77	0.47	6.8	93.2	0.0	-0.89	0.27	0.74	0.83	2.38	11819	1536	2	0	1	0	0	logfile
✔	7XSN	33428	2022-12-11	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.62	0.0	0.03	16.36	0.00	2.110	21.47	0.00	0.0	0.0	0.0	—	0.27	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7ZGQ	14711	2022-12-13	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.68	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.003	0.58	0.0	0.05	16.86	0.00	2.154	12.19	3.84	7.0	93.0	0.0	-1.22	0.27	0.77	0.85	3.24	13704	1749	4	0	0	0	0	logfile
✔	7UB6	26436	2022-12-15	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.64	0.0	0.05	13.00	0.01	2.229	3.41	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.006	0.57	0.0	0.04	13.96	0.00	2.105	5.62	0.11	4.1	95.9	0.0	0.08	0.27	0.85	0.87	2.98	24762	3105	10	0	36	0	0	logfile
✔	7SK4	25172	2022-12-13	2021-10-19	3.3	3.73	—	3.6	0.003	0.50	0.0	0.05	14.48	0.00	2.086	6.04	0.00	5.6	94.4	0.0	-0.26	0.68	0.79	1.76	3.6	0.003	0.51	0.0	0.04	15.46	0.00	2.075	7.55	0.00	5.9	94.1	0.0	0.04	0.27	0.68	0.80	1.68	13145	831	7	0	2	0	6489	logfile
✔	8AE1	15378	2022-12-14	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.004	0.56	0.0	0.05	14.06	0.00	2.163	4.08	0.14	3.6	96.4	0.0	-0.50	0.27	0.77	0.89	3.70	21504	2859	6	0	18	0	0	logfile
✔	7LYA	23590	2022-12-14	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.67	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.004	0.57	0.0	0.03	28.02	0.00	2.160	4.21	1.09	2.0	98.0	0.0	2.17	0.27	0.73	0.87	2.74	12098	767	10	293	0	0	0	logfile
✔	8CT2	26978	2022-12-11	2022-05-13	3.1	2.85	3.02	2.9	0.004	0.61	0.0	0.04	12.29	0.00	2.209	4.75	2.03	2.6	97.0	0.4	1.50	0.61	0.86	5.28	2.9	0.002	0.51	0.0	0.04	13.28	0.00	2.191	7.05	0.14	2.8	96.8	0.4	2.25	0.27	0.61	0.85	4.62	7464	988	6	0	4	0	0	logfile
✔	8E9G	27963	2022-12-19	2022-08-26	2.6	3.76	2.65	2.8	0.004	0.61	1.0	0.10	11.51	0.01	1.861	9.41	0.00	3.8	96.0	0.2	1.13	0.82	0.89	3.72	2.8	0.003	0.57	0.0	0.04	12.94	0.00	1.976	10.89	0.65	3.1	96.8	0.1	1.34	0.27	0.83	0.90	2.89	35941	5051	22	0	15	0	0	logfile
✔	7TMP	25998	2022-12-16	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.96	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.56	0.0	0.04	14.10	0.00	1.901	8.86	0.17	3.4	96.5	0.0	1.17	0.28	0.79	0.86	2.99	32105	4805	16	0	2	0	0	logfile
✔	8D0K	27107	2022-12-16	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.60	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.55	0.0	0.04	14.88	0.00	2.170	11.15	0.00	4.9	95.0	0.1	0.61	0.28	0.82	0.80	—	31011	3820	8	20	0	0	0	logfile
✔	7RQZ	24641	2022-12-18	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	17.06	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.003	0.45	0.0	0.03	16.29	0.00	2.107	5.24	0.00	3.8	96.2	0.0	1.03	0.28	0.60	0.76	1.54	32740	2128	8	0	20	0	15608	logfile
✔	7RTU	24689	2022-12-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.56	0.0	0.04	16.78	0.00	2.208	7.11	0.16	2.8	97.2	0.0	4.06	0.28	0.62	0.73	0.11	5962	754	6	0	12	0	0	logfile

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