Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BC6	12140	2022-07-03	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.66	0.0	0.04	15.30	0.00	2.196	8.33	0.00	4.4	95.6	0.0	0.23	0.29	0.59	0.84	1.92	4178	549	2	0	0	0	0	logfile
✔	7TMP	25998	2022-07-06	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.96	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.57	0.0	0.04	14.08	0.00	1.893	8.93	0.25	3.2	96.7	0.0	1.23	0.29	0.80	0.85	3.02	32105	4805	16	0	2	0	0	logfile
✔	7V7F	31769	2022-07-05	2021-08-21	2.9	3.82	—	3.2	0.004	0.56	0.0	0.05	13.42	0.00	2.061	7.34	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.005	0.58	0.0	0.05	14.94	0.00	2.108	8.30	1.51	5.7	94.2	0.1	-0.14	0.29	0.89	0.87	2.25	25503	3114	42	0	84	0	0	logfile
✔	7E26	30952	2022-07-03	2021-02-04	2.29	2.97	—	2.9	0.009	0.93	0.0	0.06	14.05	0.01	2.312	3.09	1.19	1.5	98.5	0.0	-2.93	0.73	0.88	5.43	2.9	0.003	0.54	0.0	0.04	15.99	0.00	2.201	4.50	1.53	1.9	98.1	0.0	1.55	0.29	0.54	0.81	5.02	11360	1435	10	0	0	80	0	logfile
✔	7RTU	24689	2022-07-03	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.20	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile
✔	7T37	25650	2022-07-04	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.07	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.002	0.51	0.0	0.03	14.10	0.00	2.291	6.52	0.00	2.8	97.2	0.0	1.29	0.29	0.68	0.82	1.94	20176	2476	8	0	8	0	0	logfile
✔	7XNo	33321	2022-07-04	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.51	0.0	0.04	12.91	0.00	2.215	5.90	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.37	0.00	2.207	5.84	1.81	5.2	94.7	0.1	1.75	0.29	0.69	0.87	3.07	15888	2085	15	0	3	0	0	logfile
✔	7MU1	24001	2022-07-06	2021-05-14	3.3	3.26	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.19	0.43	3.4	96.6	0.0	0.09	0.86	0.88	3.31	3.2	0.004	0.56	0.0	0.04	15.32	0.00	2.284	7.25	0.34	4.7	95.3	0.0	0.93	0.29	0.87	0.91	3.10	132492	16104	61	0	61	0	0	logfile
✔	7V7S	31780	2022-07-05	2021-08-21	3.0	3.84	—	3.3	0.003	0.52	0.0	0.04	13.55	0.00	2.197	7.45	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.005	0.57	0.0	0.04	14.94	0.00	2.156	7.85	1.04	4.9	95.0	0.0	0.26	0.29	0.87	0.86	1.94	25255	3088	39	0	81	0	0	logfile
✔	7VD9	31911	2022-07-04	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7V7H	31771	2022-07-08	2021-08-21	3.2	4.02	—	3.7	0.002	0.54	0.0	0.05	13.43	0.00	2.162	7.30	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.003	0.53	0.0	0.05	14.75	0.00	2.175	7.29	0.07	4.6	95.4	0.0	-0.14	0.30	0.85	0.84	1.87	50949	6209	84	0	174	0	0	logfile
✔	7W3V	32294	2022-07-03	2021-11-26	3.11	2.33	3.12	2.1	0.003	0.55	0.0	0.05	14.21	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.004	0.61	0.0	0.05	15.88	0.00	2.196	8.44	0.62	6.8	93.2	0.0	-2.47	0.30	0.81	0.82	2.92	7480	918	8	0	24	0	0	logfile
✔	7oD3	12818	2022-07-05	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.58	0.0	0.05	13.89	0.00	1.953	2.61	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.004	0.64	0.0	0.05	16.15	0.00	2.180	3.12	1.97	4.4	95.6	0.0	-0.52	0.30	0.75	0.84	3.83	24222	3036	6	0	36	0	0	logfile
✔	7W02	32234	2022-07-03	2021-11-17	3.3	3.44	—	3.4	0.007	0.89	0.0	0.05	14.64	0.00	1.892	7.44	0.23	10.9	89.1	0.1	-3.18	0.68	0.87	2.65	3.4	0.003	0.65	0.0	0.04	15.94	0.00	1.939	6.06	0.16	8.1	91.9	0.1	-1.58	0.30	0.68	0.88	2.11	12326	1566	1	0	6	0	0	logfile
✔	7TL1	25983	2022-07-05	2022-01-18	3.5	3.79	3.47	3.6	0.003	0.66	0.0	0.05	11.12	0.01	2.302	3.36	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.003	0.51	0.0	0.04	12.50	0.00	2.169	6.50	0.07	3.3	96.7	0.0	0.39	0.30	0.85	0.84	2.49	25109	3138	11	0	38	0	0	logfile
✔	7V2M	31656	2022-07-03	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	16.39	0.00	2.232	6.28	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.006	0.70	0.0	0.04	16.83	0.00	2.073	10.96	0.29	5.8	94.1	0.1	-0.16	0.30	0.80	0.86	1.92	55229	2909	25	1486	2	0	0	logfile
✔	7NNP	12482	2022-07-03	2021-02-25	3.2	2.99	3.18	3.2	0.006	0.96	0.0	0.05	15.80	0.01	2.223	5.48	0.00	3.5	96.5	0.0	-0.72	0.67	0.82	2.17	3.2	0.003	0.56	0.0	0.04	15.88	0.00	2.199	9.72	0.18	3.0	97.0	0.0	0.80	0.30	0.70	0.85	1.86	11096	1456	6	0	11	0	0	logfile
✔	7ENN	31217	2022-07-04	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.33	0.00	2.127	8.12	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.005	0.61	0.0	0.04	26.14	0.00	2.079	6.13	0.73	4.5	95.5	0.0	1.03	0.30	0.84	0.89	3.43	16319	1300	12	292	2	0	0	logfile
✔	7EAZ	31047	2022-07-05	2021-03-08	3.5	4.16	—	4.0	0.003	0.60	0.0	0.05	13.88	0.00	2.146	8.32	0.00	5.3	94.7	0.0	-1.15	0.79	0.77	2.17	4.0	0.003	0.59	0.0	0.05	15.26	0.00	2.124	8.13	0.07	5.1	94.8	0.0	-0.76	0.30	0.81	0.79	2.00	24956	3051	38	0	82	0	0	logfile
✔	7WBL	32405	2022-07-03	2021-12-17	3.4	3.46	—	3.5	0.004	0.58	0.0	0.04	15.30	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.4	0.008	1.05	0.0	0.04	16.94	0.00	2.152	6.00	0.14	3.4	96.4	0.1	0.99	0.30	0.69	0.80	1.72	6484	791	3	0	5	0	0	logfile

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