Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MU1	24001	2022-05-16	2021-05-14	3.3	3.26	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.19	0.43	3.4	96.6	0.0	0.09	0.86	0.88	3.31	3.2	0.003	0.54	0.0	0.04	15.31	0.00	2.274	7.34	0.00	4.4	95.6	0.0	1.01	0.29	0.87	0.91	2.98	132492	16104	61	0	61	0	0	logfile
✔	7LYC	23592	2022-05-14	2021-03-06	2.94	3.08	2.92	3.1	0.006	0.65	0.0	0.04	25.88	0.00	1.314	7.06	0.10	2.2	97.8	0.0	-0.02	0.73	0.82	3.48	3.1	0.004	0.57	0.0	0.04	26.45	0.00	2.178	7.58	1.18	2.8	97.2	0.0	1.50	0.29	0.73	0.84	3.20	15475	1188	12	293	0	0	0	logfile
✔	7VBM	31882	2022-05-13	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.60	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.92	0.00	2.190	6.74	0.00	1.8	98.2	0.0	2.72	0.29	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7VD9	31911	2022-05-14	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7RYH	24740	2022-05-16	2021-08-25	2.43	1.94	—	2.2	0.005	0.63	0.0	0.07	15.90	0.02	1.844	3.81	2.55	2.2	97.7	0.1	1.17	0.77	0.74	2.99	1.6	0.005	0.78	0.0	0.05	16.18	0.01	1.851	5.60	4.94	2.7	97.1	0.1	0.53	0.29	0.78	0.76	3.01	135829	5499	53	4328	8	0	0	logfile
✔	7BC6	12140	2022-05-12	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.66	0.0	0.04	15.30	0.00	2.196	8.33	0.00	4.4	95.6	0.0	0.23	0.29	0.59	0.84	1.92	4178	549	2	0	0	0	0	logfile
✔	7E8D	31015	2022-05-13	2021-03-01	2.8	3.12	—	3.0	0.011	0.72	0.0	0.05	28.84	0.00	2.070	7.70	1.95	5.1	94.8	0.1	-0.71	0.83	0.87	3.74	2.9	0.003	0.61	0.0	0.04	29.13	0.00	2.106	8.89	1.22	3.6	96.4	0.0	1.02	0.29	0.85	0.89	3.21	14852	983	11	344	4	0	0	logfile
✔	7TMP	25998	2022-05-16	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.96	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.57	0.0	0.04	14.08	0.00	1.893	8.93	0.25	3.2	96.7	0.0	1.23	0.29	0.80	0.85	3.02	32105	4805	16	0	2	0	0	logfile
✔	7RTU	24689	2022-05-12	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.20	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile
✔	7V7S	31780	2022-05-15	2021-08-21	3.0	3.84	—	3.3	0.003	0.52	0.0	0.04	13.55	0.00	2.197	7.45	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.005	0.57	0.0	0.04	14.94	0.00	2.156	7.85	1.04	4.9	95.0	0.0	0.26	0.29	0.87	0.86	1.94	25255	3088	39	0	81	0	0	logfile
✔	7M1P	23617	2022-05-13	2021-03-14	3.6	3.93	—	3.8	0.003	0.58	0.0	0.04	13.50	0.00	2.226	8.22	0.00	9.4	90.4	0.2	-0.96	0.68	0.74	1.70	3.9	0.010	1.10	1.0	0.04	15.12	0.01	2.166	9.57	0.27	9.5	90.4	0.1	-1.05	0.30	0.68	0.75	1.22	13511	1938	5	0	13	1	0	logfile
✔	7EU7	31308	2022-05-14	2021-05-16	3.5	3.93	—	3.5	0.003	0.62	0.0	0.05	13.10	0.01	2.172	16.47	2.99	5.0	94.8	0.1	-0.02	0.83	0.83	2.68	3.4	0.002	0.53	0.0	0.04	13.49	0.00	2.183	7.75	0.00	4.7	95.3	0.0	0.13	0.30	0.84	0.85	2.39	21773	3134	8	0	25	0	0	logfile
✔	7M4Y	23670	2022-05-17	2021-03-22	2.5	1.72	—	1.5	0.008	0.60	2.0	0.05	16.30	0.02	1.783	3.52	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.005	0.79	0.0	0.04	16.55	0.01	1.670	4.79	3.79	3.1	96.7	0.1	0.33	0.30	0.79	0.77	3.89	139817	5511	80	4453	200	1044	0	logfile
✔	7ENN	31217	2022-05-14	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.33	0.00	2.127	8.12	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.005	0.61	0.0	0.04	26.14	0.00	2.079	6.13	0.73	4.5	95.5	0.0	1.03	0.30	0.84	0.89	3.43	16319	1300	12	292	2	0	0	logfile
✔	7TL1	25983	2022-05-15	2022-01-18	3.5	3.79	3.47	3.6	0.003	0.66	0.0	0.05	11.12	0.01	2.302	3.36	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.003	0.51	0.0	0.04	12.50	0.00	2.169	6.50	0.07	3.3	96.7	0.0	0.39	0.30	0.85	0.84	2.49	25109	3138	11	0	38	0	0	logfile
✔	7ASM	11900	2022-05-16	2020-10-27	2.48	2.98	—	2.8	0.010	0.84	0.0	0.05	14.78	0.01	2.012	5.47	0.65	7.3	92.3	0.4	-3.05	0.89	0.91	4.54	2.8	0.005	0.65	0.0	0.04	15.00	0.01	2.064	5.40	2.29	6.6	93.3	0.1	-0.90	0.30	0.85	0.92	3.87	86149	3036	30	2949	1	0	0	logfile
✔	7V7H	31771	2022-05-18	2021-08-21	3.2	4.02	—	3.7	0.002	0.54	0.0	0.05	13.43	0.00	2.162	7.30	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.003	0.53	0.0	0.05	14.75	0.00	2.175	7.29	0.07	4.6	95.4	0.0	-0.14	0.30	0.85	0.84	1.87	50949	6209	84	0	174	0	0	logfile
✔	7NNP	12482	2022-05-13	2021-02-25	3.2	2.99	3.18	3.2	0.006	0.96	0.0	0.05	15.80	0.01	2.223	5.48	0.00	3.5	96.5	0.0	-0.72	0.67	0.82	2.17	3.2	0.003	0.56	0.0	0.04	15.88	0.00	2.199	9.72	0.18	3.0	97.0	0.0	0.80	0.30	0.70	0.85	1.86	11096	1456	6	0	11	0	0	logfile
✔	7oD3	12818	2022-05-15	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.58	0.0	0.05	13.89	0.00	1.953	2.61	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.004	0.64	0.0	0.05	16.15	0.00	2.180	3.12	1.97	4.4	95.6	0.0	-0.52	0.30	0.75	0.84	3.83	24222	3036	6	0	36	0	0	logfile
✔	7RHK	24464	2022-05-13	2021-07-17	3.27	2.87	—	3.1	0.010	0.76	0.0	0.05	14.48	0.00	2.260	6.58	0.00	2.8	97.2	0.0	0.46	0.63	0.83	1.80	3.1	0.002	0.50	0.0	0.04	15.87	0.00	2.195	10.99	0.19	2.5	97.5	0.0	1.87	0.30	0.63	0.86	1.99	14682	1776	8	0	5	0	0	logfile

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