Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FGW	29073	2023-07-18	2022-12-12	3.7	3.39	2.51	2.0	0.003	0.54	0.0	0.04	12.36	0.00	2.078	10.57	0.00	4.2	95.8	0.0	0.55	0.83	0.76	1.74	2.0	0.002	0.53	0.0	0.04	14.05	0.00	2.081	10.40	0.13	3.9	96.1	0.0	0.94	0.28	0.84	0.78	1.47	43527	5564	9	0	5	0	0	logfile
✔	8EUi	24423	2023-07-09	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	7QPC	14117	2023-07-06	2022-01-03	3.44	3.64	3.38	3.7	0.003	1.07	0.0	0.04	14.77	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.54	0.0	0.03	15.30	0.00	2.115	7.87	0.00	3.1	96.9	0.0	1.53	0.28	0.58	0.80	1.35	10830	654	6	0	4	62	5540	logfile
✔	7QiA	13985	2023-07-03	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.004	0.65	0.0	0.04	14.55	0.00	2.212	12.04	0.40	7.7	92.3	0.0	-0.31	0.28	0.62	0.80	1.49	4843	639	4	0	0	3	0	logfile
✔	7ASM	11900	2023-07-14	2020-10-27	2.48	2.98	—	2.8	0.010	0.84	0.0	0.05	14.78	0.01	2.012	5.42	0.65	7.3	92.3	0.4	-3.05	0.89	0.91	4.54	2.8	0.004	0.65	0.0	0.04	15.01	0.01	2.062	5.39	2.37	6.5	93.4	0.1	-0.91	0.28	0.85	0.92	3.85	86149	3036	30	2949	1	0	0	logfile
✔	7UTN	26782	2023-07-04	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	18.52	0.00	2.158	8.00	0.58	1.8	98.2	0.0	0.95	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	6M54	30084	2023-07-15	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.005	0.68	0.0	0.05	16.60	0.00	2.395	0.48	0.90	4.0	96.0	0.0	3.36	0.28	0.81	0.91	3.74	33382	4104	38	0	6	8	0	logfile
✔	7XNP	33322	2023-07-05	2022-04-29	2.9	2.50	2.96	2.9	0.005	0.75	0.0	0.04	27.32	0.01	2.297	2.36	0.00	2.1	97.9	0.0	-0.95	0.72	0.77	3.05	2.9	0.003	0.60	0.0	0.04	28.32	0.00	2.176	6.43	1.78	2.3	97.7	0.0	2.13	0.28	0.72	0.80	2.91	10943	746	10	246	0	0	0	logfile
✔	6YPU	10869	2023-07-15	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	6.04	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.005	0.66	0.0	0.04	15.94	0.00	1.855	5.17	6.81	6.7	93.3	0.0	-0.87	0.28	0.79	0.87	2.40	33322	1496	17	1040	60	0	0	logfile
✔	7NNT	12483	2023-07-04	2021-02-25	3.4	3.53	3.51	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.004	0.55	0.0	0.04	15.65	0.00	2.225	8.18	0.36	2.1	97.9	0.0	0.34	0.28	0.68	0.84	2.10	7666	979	4	0	0	0	0	logfile
✔	7QUR	14152	2023-07-12	2022-01-18	2.27	2.80	—	2.7	0.005	0.68	0.0	0.05	15.81	0.00	2.145	4.96	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.003	0.57	0.0	0.05	15.74	0.00	2.089	4.41	1.08	3.7	96.1	0.2	-0.29	0.28	0.69	0.86	4.97	27174	3303	21	0	75	282	0	logfile
✔	7V2R	31647	2023-07-09	2021-08-09	2.6	2.62	—	2.6	0.007	0.91	13.0	0.06	17.82	0.01	1.360	8.98	1.24	3.6	96.2	0.1	1.07	0.78	0.87	3.78	2.6	0.003	0.55	0.0	0.04	17.30	0.00	2.179	6.52	1.45	3.8	96.2	0.0	1.20	0.28	0.79	0.89	3.44	68260	8270	68	0	47	0	0	logfile
✔	7ZZ4	15034	2023-07-03	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	17.04	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.54	0.0	0.04	17.07	0.00	1.948	10.15	1.59	3.7	96.3	0.0	0.70	0.28	0.87	0.85	3.99	3682	463	1	0	3	11	0	logfile
✔	8H4K	34479	2023-07-04	2022-10-10	3.1	2.32	3.10	3.1	0.006	0.76	0.0	0.05	13.50	0.00	2.061	4.14	0.00	5.5	94.5	0.0	0.17	0.77	0.81	3.47	3.1	0.004	0.62	0.0	0.04	14.95	0.00	2.080	4.33	0.12	4.0	96.0	0.0	1.05	0.28	0.77	0.83	2.83	8078	1055	5	0	1	0	0	logfile
✔	8BVQ	16268	2023-07-12	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.002	0.48	0.0	0.04	16.24	0.00	2.051	7.03	0.39	5.0	95.0	0.0	-0.40	0.28	0.60	0.81	1.87	23125	1518	6	0	0	0	11250	logfile
✔	7CKB	30384	2023-07-06	2020-07-16	3.24	3.29	—	3.2	0.008	0.88	0.0	0.05	16.33	0.01	2.160	6.96	1.05	4.0	96.0	0.0	-0.87	0.85	0.88	2.17	3.2	0.006	0.72	0.0	0.05	17.10	0.00	2.145	7.26	1.43	2.5	97.5	0.0	-0.14	0.28	0.85	0.90	2.74	114840	15840	180	0	0	0	0	logfile
✔	7NWT	12635	2023-07-26	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	14.14	0.02	1.145	4.87	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.002	0.65	0.0	0.04	15.17	0.01	1.149	8.11	2.80	3.2	96.8	0.0	0.13	0.28	0.87	0.88	3.51	149932	6355	74	4641	439	2	0	logfile
✔	8DXQ	27773	2023-07-05	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	8G6X	29787	2023-07-16	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	2.1	0.005	0.81	0.0	0.04	15.23	0.01	1.777	6.96	3.37	3.9	96.0	0.1	-0.33	0.28	0.69	0.85	5.14	93873	3177	72	3037	252	3462	0	logfile
✔	7ZVT	14986	2023-07-04	2022-05-17	2.74	3.38	2.78	3.2	0.004	0.57	0.0	0.04	19.17	0.00	2.192	7.49	2.94	1.6	98.4	0.0	1.55	0.83	0.89	3.04	3.2	0.003	0.55	0.0	0.04	19.22	0.00	2.088	8.00	2.50	1.4	98.6	0.0	1.63	0.28	0.82	0.90	2.75	8842	1022	4	30	1	0	0	logfile

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