Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MPG	23933	2023-02-23	2021-05-04	3.4	3.98	—	4.0	0.003	0.71	0.0	0.06	13.49	0.00	1.908	15.24	0.00	6.1	93.7	0.2	-1.25	0.57	0.67	1.15	3.9	0.004	0.76	0.0	0.05	16.43	0.01	2.104	15.81	0.43	5.4	94.4	0.2	-0.90	0.89	0.59	0.81	1.27	20366	2640	12	0	3	0	0	logfile
✔	7ZTD	14958	2023-02-25	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.003	0.68	0.0	0.04	13.92	0.00	2.049	9.84	0.00	4.9	95.1	0.0	0.37	10.50	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	7VAU	31864	2023-02-27	2021-08-30	3.3	2.83	3.35	3.2	0.007	0.69	0.0	0.05	13.63	0.00	1.966	5.17	0.00	2.6	97.4	0.0	0.84	0.60	0.81	2.86	3.1	0.004	0.59	0.0	0.04	16.36	0.00	1.965	6.66	0.52	2.8	97.2	0.0	0.21	1.12	0.63	0.85	2.44	29513	3787	14	0	4	0	0	logfile
✔	7VAT	31863	2023-02-27	2021-08-30	3.2	2.73	3.10	3.1	0.003	0.53	0.0	0.04	13.31	0.00	1.997	3.69	0.00	1.8	98.2	0.0	1.37	0.63	0.83	3.27	3.0	0.006	0.68	0.0	0.05	16.22	0.01	2.035	6.37	0.32	3.4	96.6	0.0	0.35	0.65	0.69	0.87	3.15	29520	3787	14	0	4	0	0	logfile
✔	7K0J	22599	2023-02-18	2020-09-04	3.1	3.65	—	3.6	0.006	0.71	0.0	0.05	13.14	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.004	0.52	0.0	0.04	14.55	0.00	2.216	5.15	0.12	2.6	97.4	0.0	1.07	0.40	0.63	0.80	3.33	7683	977	5	0	3	0	0	logfile
✔	7VAY	31871	2023-02-27	2021-08-30	3.3	2.93	3.28	3.2	0.005	0.59	0.0	0.04	13.52	0.00	1.949	6.21	0.00	2.6	97.4	0.0	1.07	0.63	0.77	3.23	3.1	0.006	0.65	0.0	0.05	16.18	0.01	1.933	8.94	0.32	2.9	97.1	0.0	0.22	1.06	0.72	0.86	3.30	29553	3788	16	0	5	0	0	logfile
✔	7Li8	23363	2023-02-17	2021-01-26	3.9	4.37	—	4.3	0.002	0.60	0.0	0.04	10.77	0.00	2.230	6.84	0.00	5.3	94.7	0.0	-3.23	0.62	0.72	1.26	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.202	10.39	0.16	7.1	92.9	0.0	-1.27	2.18	0.64	0.76	1.67	6181	767	5	0	14	0	0	logfile
✔	7MiS	23863	2023-02-25	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✘	8CSR	26968	2023-02-27	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✔	7FDB	31539	2023-02-24	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7K0Q	22608	2023-02-18	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	6VRL	21370	2023-02-17	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.56	0.0	0.04	14.02	0.00	2.159	10.57	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.003	0.71	0.0	0.04	16.18	0.00	2.038	17.54	0.46	6.6	93.4	0.0	-1.10	0.78	0.50	0.70	1.42	6141	764	4	0	4	0	0	logfile
✔	8DD8	27336	2023-02-19	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.30	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.53	0.0	0.04	16.75	0.00	2.198	10.11	0.00	4.0	96.0	0.0	0.42	1.22	0.83	0.84	1.99	10492	1272	2	0	0	0	0	logfile
✔	8E96	27957	2023-02-24	2022-08-26	3.38	2.51	—	2.0	0.003	0.55	0.0	0.04	14.27	0.00	2.149	8.15	0.00	6.5	93.4	0.1	-1.58	0.78	0.75	2.05	2.0	0.004	0.62	0.0	0.05	15.65	0.00	2.122	9.33	0.22	6.9	93.0	0.1	-1.20	0.92	0.79	0.78	1.71	21924	2838	8	0	6	0	0	logfile
✔	7KFT	22855	2023-02-20	2020-10-14	3.4	3.68	—	3.6	0.005	0.83	0.0	0.05	14.40	0.01	2.237	5.46	0.00	4.8	95.2	0.0	-0.99	0.69	0.79	2.73	3.6	0.004	0.60	0.0	0.04	16.08	0.00	2.148	7.42	0.24	4.8	95.2	0.0	0.49	0.40	0.69	0.80	2.11	11680	1427	5	0	0	0	0	logfile
✔	7V78	31762	2023-02-25	2021-08-21	3.4	3.85	—	3.7	0.004	0.55	0.0	0.05	14.31	0.00	2.142	6.37	0.00	5.4	94.5	0.1	-0.20	0.74	0.77	2.64	3.8	0.003	0.57	0.0	0.05	15.68	0.00	2.159	6.37	0.18	4.8	95.1	0.1	-0.29	0.37	0.79	0.83	2.42	25677	3123	41	0	90	0	0	logfile
✔	6VRH	21368	2023-02-17	2020-02-07	3.3	3.68	3.56	3.6	0.003	0.54	0.0	0.04	12.92	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.57	0.0	0.04	14.97	0.00	2.144	9.26	0.15	5.7	94.3	0.0	-0.69	0.59	0.50	0.74	1.56	6142	764	4	0	5	0	0	logfile
✔	6VRK	21369	2023-02-17	2020-02-07	4.1	4.22	4.47	4.2	0.003	0.61	0.0	0.04	13.76	0.00	2.245	10.65	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	4.2	0.003	0.68	0.0	0.04	13.78	0.00	2.130	14.83	0.00	7.0	93.0	0.0	-1.39	1.03	0.47	0.69	—	6141	764	4	0	4	0	0	logfile
✔	7Li7	23362	2023-02-17	2021-01-26	4.1	4.15	—	4.2	0.002	0.60	0.0	0.06	12.19	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.68	0.0	0.04	13.27	0.00	2.198	13.79	0.16	6.3	93.7	0.0	-1.48	0.97	0.66	0.78	—	6177	765	5	0	13	0	0	logfile
✘	7VAV	31866	2023-02-27	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile

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