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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6RPo | 4979 | 2022-07-06 | 2019-05-14 | 2.39 | 2.44 | — | 2.4 | 0.006 | 0.92 | 0.0 | 0.05 | 15.02 | 0.01 | 2.326 | 7.31 | 0.00 | 3.7 | 95.8 | 0.5 | -2.67 | 0.72 | 0.86 | 4.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101400 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X14 | 21988 | 2022-07-03 | 2020-05-18 | 3.71 | 3.82 | — | 3.8 | 0.008 | 1.10 | 0.0 | 0.05 | 16.45 | 0.01 | 2.282 | 6.68 | 0.00 | 3.2 | 96.8 | 0.0 | -4.81 | 0.62 | 0.83 | 1.45 | 3.9 | 0.007 | 0.86 | 0.0 | 0.04 | 16.77 | 0.00 | 2.188 | 7.97 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 1.15 | 0.61 | 0.83 | 1.32 | 9486 | 1239 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2022-07-03 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.004 | 1.19 | 0.0 | 0.04 | 13.17 | 0.00 | 1.948 | 19.40 | 0.00 | 27.4 | 72.5 | 0.2 | -5.14 | 6.11 | 0.74 | 0.62 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7D7M | 30608 | 2022-07-03 | 2020-10-05 | 3.3 | 2.94 | 3.16 | 3.3 | 0.004 | 0.64 | 0.0 | 0.06 | 14.43 | 0.00 | 2.208 | 10.14 | 0.00 | 1.3 | 98.7 | 0.0 | 0.14 | 0.64 | 0.75 | 2.13 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 15.22 | 0.01 | 2.178 | 9.57 | 0.59 | 2.1 | 97.9 | 0.0 | 0.71 | 0.53 | 0.62 | 0.76 | 1.54 | 7326 | 1031 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KHW | 22881 | 2022-07-04 | 2020-10-22 | 3.4 | 3.56 | — | 3.6 | 0.008 | 0.97 | 0.0 | 0.05 | 13.30 | 0.00 | 1.645 | 21.96 | 0.00 | 11.6 | 88.4 | 0.0 | -1.82 | 0.60 | 0.77 | 1.48 | 3.6 | 0.009 | 0.91 | 3.0 | 0.04 | 15.88 | 0.00 | 2.057 | 8.15 | 0.11 | 7.2 | 92.8 | 0.0 | 0.48 | 0.53 | 0.67 | 0.80 | 1.51 | 65550 | 8700 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VE3 | 21153 | 2022-07-05 | 2019-12-28 | 4.3 | 4.68 | 4.39 | 4.4 | 0.005 | 1.17 | 2.0 | 0.07 | 5.96 | 0.01 | 2.179 | 22.46 | 0.00 | 3.4 | 96.3 | 0.3 | -0.31 | 0.81 | 0.69 | — | 4.4 | 0.003 | 0.83 | 0.0 | 0.05 | 6.53 | 0.00 | 2.137 | 7.70 | 0.00 | 8.0 | 92.0 | 0.0 | -2.25 | 1.88 | 0.81 | 0.81 | — | 22484 | 4578 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WYL | 21968 | 2022-07-03 | 2020-05-13 | 3.9 | 3.99 | — | 4.0 | 0.012 | 0.91 | 0.0 | 0.05 | 11.33 | 0.01 | 2.237 | 3.66 | 0.00 | 2.7 | 97.3 | 0.0 | -1.66 | 0.65 | 0.82 | 1.94 | 3.9 | 0.004 | 0.78 | 0.0 | 0.04 | 15.51 | 0.01 | 2.090 | 10.88 | 0.21 | 3.6 | 96.4 | 0.0 | 2.21 | 1.29 | 0.66 | 0.81 | 1.40 | 8847 | 1194 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2022-07-06 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.007 | 1.24 | 0.0 | 0.05 | 10.04 | 0.01 | 2.049 | 33.59 | 0.00 | 21.9 | 77.6 | 0.6 | -4.75 | 1.35 | 0.89 | 0.76 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K65 | 22689 | 2022-07-03 | 2020-09-18 | 3.4 | 3.95 | 3.54 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 13.43 | 0.00 | 1.391 | 8.37 | 0.00 | 2.9 | 97.1 | 0.0 | -1.91 | 0.54 | 0.76 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8796 | 1120 | 4 | 0 | 11 | 0 | 0 | logfile |
✔ | 6YBP | 10770 | 2022-07-07 | 2020-03-17 | 3.48 | 3.86 | — | 3.8 | 0.038 | 1.47 | 0.0 | 0.05 | 16.07 | 0.01 | 1.664 | 9.56 | 0.00 | 6.4 | 93.6 | 0.0 | -2.69 | 0.74 | 0.85 | 2.36 | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 16.24 | 0.00 | 2.188 | 7.95 | 0.27 | 4.4 | 95.6 | 0.0 | -0.91 | 0.40 | 0.74 | 0.86 | 2.06 | 36410 | 4702 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 7K4C | 22664 | 2022-07-04 | 2020-09-15 | 3.78 | 4.46 | — | 4.3 | 0.009 | 1.09 | 0.0 | 0.06 | 11.45 | 0.01 | 2.296 | 5.38 | 0.00 | 11.4 | 88.5 | 0.2 | -5.34 | 0.74 | 0.80 | 1.36 | 4.3 | 0.003 | 0.86 | 0.0 | 0.04 | 14.78 | 0.00 | 2.200 | 15.01 | 0.61 | 9.0 | 90.9 | 0.1 | -2.10 | 0.98 | 0.73 | 0.78 | 0.98 | 19744 | 2444 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 6K3o | 9910 | 2022-07-06 | 2019-05-21 | 3.4 | 3.86 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 14.46 | 0.00 | 1.077 | 16.09 | 0.00 | 3.8 | 96.2 | 0.0 | -1.52 | 0.79 | 0.82 | 3.15 | 3.8 | 0.004 | 0.73 | 0.0 | 0.03 | 17.05 | 0.00 | 1.627 | 5.96 | 0.75 | 2.1 | 97.9 | 0.0 | 3.83 | 0.50 | 0.77 | 0.82 | 2.46 | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 6WL0 | 21814 | 2022-07-03 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.005 | 0.97 | 0.0 | 0.04 | 14.48 | 0.00 | 2.146 | 21.73 | 0.09 | 0.4 | 99.6 | 0.0 | 0.45 | 1.67 | 0.79 | 0.85 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KiP | 22889 | 2022-07-06 | 2020-10-24 | 3.39 | 4.00 | 3.47 | 3.9 | 0.009 | 0.90 | 0.0 | 0.06 | 8.62 | 0.01 | 2.290 | 1.91 | 0.00 | 7.9 | 92.1 | 0.1 | -4.05 | 0.83 | 0.84 | 3.42 | 3.9 | 0.005 | 0.63 | 0.0 | 0.05 | 11.35 | 0.00 | 2.153 | 4.34 | 0.13 | 8.5 | 91.4 | 0.0 | -1.57 | 0.57 | 0.84 | 0.87 | 2.86 | 30612 | 3576 | 69 | 0 | 222 | 0 | 0 | logfile |
✔ | 6X33 | 22016 | 2022-07-04 | 2020-05-21 | 4.2 | 4.35 | — | 4.3 | 0.001 | 0.37 | 0.0 | 0.03 | 9.39 | 0.00 | 2.304 | 3.34 | 0.00 | 1.9 | 98.1 | 0.0 | -4.22 | 0.55 | 0.69 | — | 4.3 | 0.004 | 0.70 | 0.0 | 0.04 | 11.86 | 0.00 | 2.017 | 10.82 | 0.09 | 4.4 | 95.6 | 0.0 | -0.11 | 0.68 | 0.59 | 0.74 | — | 112372 | 14796 | 16 | 0 | 1436 | 0 | 0 | logfile |
✔ | 7CZ5 | 30505 | 2022-07-03 | 2020-09-07 | 2.6 | 2.89 | — | 2.9 | 0.004 | 0.69 | 0.0 | 0.05 | 13.25 | 0.00 | 2.186 | 6.39 | 0.00 | 3.3 | 96.7 | 0.0 | -2.04 | 0.60 | 0.80 | 4.16 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 15.98 | 0.00 | 2.155 | 6.08 | 1.46 | 2.9 | 97.1 | 0.0 | 0.19 | 0.44 | 0.62 | 0.83 | 2.89 | 8336 | 1046 | 11 | 0 | 3 | 3 | 0 | logfile |
✔ | 7JY5 | 22521 | 2022-07-06 | 2020-08-28 | 2.89 | 3.63 | 2.89 | 3.1 | 0.009 | 0.67 | 0.0 | 0.05 | 13.96 | 0.00 | 1.883 | 10.04 | 0.00 | 3.8 | 96.2 | 0.0 | -0.30 | 0.85 | 0.81 | 2.64 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 14.86 | 0.00 | 1.935 | 8.73 | 0.51 | 2.0 | 98.0 | 0.0 | 1.63 | 0.45 | 0.87 | 0.86 | 2.07 | 34728 | 4386 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6XSS | 22305 | 2022-07-03 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.015 | 1.65 | 1.0 | 0.04 | 17.18 | 0.01 | 2.065 | 21.16 | 0.36 | 1.6 | 98.4 | 0.0 | 2.61 | 1.33 | 0.75 | 0.80 | 0.22 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X15 | 21989 | 2022-07-03 | 2020-05-18 | 3.05 | 3.20 | — | 3.2 | 0.009 | 1.26 | 0.0 | 0.05 | 19.04 | 0.01 | 2.281 | 3.63 | 0.00 | 3.1 | 96.9 | 0.0 | -3.80 | 0.73 | 0.87 | 2.90 | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 15.47 | 0.00 | 2.196 | 6.17 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.44 | 0.73 | 0.88 | 2.53 | 10026 | 1260 | 9 | 0 | 51 | 9 | 0 | logfile |
✘ | 6X17 | 21991 | 2022-07-03 | 2020-05-18 | 3.66 | 3.75 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.05 | 15.45 | 0.01 | 2.284 | 4.19 | 0.00 | 3.4 | 96.6 | 0.0 | -3.74 | 0.64 | 0.85 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9390 | 1245 | 9 | 0 | 3 | 3 | 0 | logfile |