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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XoJ | 33349 | 2023-12-07 | 2022-05-01 | 2.8 | 3.84 | 2.82 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 13.28 | 0.00 | 2.189 | 10.04 | 0.00 | 0.9 | 99.1 | 0.0 | 2.28 | 0.88 | 0.87 | 2.08 | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 14.86 | 0.00 | 2.086 | 12.37 | 0.44 | 1.4 | 98.6 | 0.0 | 2.09 | 0.29 | 0.88 | 0.88 | 1.95 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7C | 28902 | 2023-12-10 | 2022-11-18 | 3.92 | 4.16 | 3.93 | 4.2 | 0.002 | 0.52 | 0.0 | 0.04 | 13.95 | 0.00 | 1.675 | 4.95 | 0.00 | 3.2 | 96.8 | 0.0 | 0.02 | 0.64 | 0.82 | 2.00 | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 15.82 | 0.00 | 2.139 | 5.01 | 0.48 | 2.8 | 97.2 | 0.0 | 1.25 | 0.40 | 0.66 | 0.82 | 1.78 | 15925 | 2009 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGD | 26487 | 2023-12-08 | 2022-03-24 | 2.95 | 3.61 | 2.95 | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 11.38 | 0.00 | 2.005 | 2.21 | 0.00 | 0.7 | 99.3 | 0.0 | 0.34 | 0.49 | 0.84 | 3.05 | 3.5 | 0.004 | 0.58 | 0.0 | 0.04 | 14.29 | 0.00 | 2.225 | 3.80 | 0.31 | 0.2 | 99.8 | 0.0 | 2.52 | 0.45 | 0.49 | 0.85 | 2.12 | 3079 | 415 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-12-07 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-12-07 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoK | 33350 | 2023-12-07 | 2022-05-01 | 2.7 | 3.82 | 2.75 | 3.2 | 0.003 | 0.50 | 0.0 | 0.04 | 13.15 | 0.00 | 2.160 | 10.61 | 0.00 | 1.1 | 98.9 | 0.0 | 2.23 | 0.87 | 0.86 | 1.97 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 14.79 | 0.00 | 2.108 | 12.44 | 0.34 | 1.0 | 99.0 | 0.0 | 2.10 | 0.30 | 0.87 | 0.86 | 1.75 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CR2 | 16802 | 2023-12-08 | 2023-03-07 | 4.2 | 4.42 | 4.19 | 5.1 | 0.004 | 1.07 | 1.0 | 0.06 | 13.24 | 0.01 | 1.914 | 20.12 | 0.00 | 5.8 | 94.2 | 0.0 | -3.18 | 0.41 | 0.29 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.05 | 14.17 | 0.00 | 2.226 | 13.97 | 0.00 | 4.0 | 96.0 | 0.0 | 0.32 | 2.03 | 0.64 | 0.68 | — | 6838 | 855 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EJE | 28179 | 2023-12-08 | 2022-09-16 | 3.69 | 3.95 | 3.70 | 3.9 | 0.023 | 2.14 | 0.0 | 0.16 | 10.94 | 0.01 | 2.317 | 2.39 | 0.00 | 6.0 | 94.0 | 0.0 | -0.11 | 0.82 | 0.79 | 2.65 | 3.8 | 0.004 | 0.93 | 0.0 | 0.05 | 15.15 | 0.00 | 1.993 | 14.63 | 0.32 | 8.9 | 91.0 | 0.1 | -0.65 | 1.06 | 0.81 | 0.78 | 2.15 | 9426 | 1068 | 33 | 0 | 66 | 0 | 0 | logfile |
✔ | 7UGX | 26498 | 2023-12-08 | 2022-03-25 | 2.96 | 3.60 | 2.95 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 10.61 | 0.00 | 2.234 | 3.61 | 0.00 | 1.5 | 98.5 | 0.0 | 1.81 | 0.48 | 0.83 | 2.71 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.34 | 0.00 | 2.184 | 6.27 | 0.62 | 2.2 | 97.8 | 0.0 | 2.70 | 0.98 | 0.49 | 0.88 | 1.91 | 3108 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7XUM | 33474 | 2023-12-08 | 2022-05-19 | 3.8 | 3.49 | 3.48 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 13.82 | 0.00 | 1.938 | 6.52 | 0.00 | 3.7 | 96.3 | 0.0 | -0.15 | 0.56 | 0.76 | 1.43 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 2.119 | 9.07 | 0.44 | 4.1 | 95.9 | 0.0 | 0.17 | 0.35 | 0.57 | 0.76 | 0.69 | 6155 | 816 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8D7R | 27231 | 2023-12-09 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 15.03 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | 4.0 | 0.004 | 0.77 | 0.0 | 0.05 | 14.70 | 0.00 | 1.942 | 12.76 | 0.76 | 11.5 | 88.5 | 0.0 | -2.04 | 0.86 | 0.65 | 0.65 | 1.30 | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 8i0Q | 35106 | 2023-12-08 | 2023-01-11 | 4.45 | 4.83 | 5.07 | 4.4 | 0.003 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 2.167 | 9.44 | 0.00 | 5.1 | 94.9 | 0.0 | -1.41 | 0.82 | 0.81 | — | 4.4 | 0.002 | 0.59 | 0.0 | 0.04 | 13.14 | 0.00 | 2.202 | 8.97 | 0.00 | 4.9 | 95.1 | 0.0 | -0.72 | 0.47 | 0.82 | 0.82 | — | 8842 | 1192 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WP1 | 32666 | 2023-12-07 | 2022-01-22 | 3.77 | 3.91 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 14.46 | 0.02 | 2.338 | 3.88 | 0.00 | 12.2 | 87.5 | 0.2 | -5.40 | 0.64 | 0.78 | 2.71 | 3.9 | 0.004 | 0.81 | 0.0 | 0.05 | 16.23 | 0.00 | 2.060 | 13.65 | 1.70 | 13.4 | 86.6 | 0.0 | -3.76 | 0.97 | 0.64 | 0.79 | 2.18 | 3305 | 423 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XoL | 33351 | 2023-12-07 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.73 | 0.00 | 2.100 | 12.34 | 0.11 | 1.1 | 98.9 | 0.0 | 2.20 | 0.25 | 0.90 | 0.90 | 1.60 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CKZ | 16707 | 2023-12-10 | 2023-02-16 | 3.07 | 3.27 | 3.09 | 3.2 | 0.005 | 0.90 | 0.0 | 0.05 | 12.35 | 0.01 | 1.966 | 3.43 | 0.00 | 1.1 | 98.9 | 0.0 | -1.16 | 0.50 | 0.80 | 4.33 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 16.14 | 0.00 | 2.066 | 8.92 | 0.34 | 1.0 | 99.0 | 0.0 | 1.65 | 1.10 | 0.52 | 0.82 | 3.89 | 13910 | 1800 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BUZ | 7293 | 2023-12-09 | 2017-12-11 | 3.92 | 4.51 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 27.46 | 0.01 | 2.308 | 8.08 | 0.00 | 5.6 | 94.4 | 0.0 | -5.03 | 0.85 | 0.86 | 3.06 | 4.2 | 0.005 | 0.77 | 0.0 | 0.04 | 28.45 | 0.00 | 2.062 | 22.00 | 0.65 | 5.4 | 94.6 | 0.0 | -0.18 | 1.28 | 0.85 | 0.86 | 1.69 | 12509 | 878 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7NS6 | 12561 | 2023-12-09 | 2021-03-05 | 3.18 | 4.09 | — | 3.2 | 0.004 | 0.85 | 25.0 | 0.06 | 13.26 | 0.00 | 2.006 | 12.56 | 0.00 | 2.3 | 97.6 | 0.1 | 0.71 | 0.87 | 0.81 | 1.73 | 3.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.111 | 10.70 | 0.21 | 3.2 | 96.8 | 0.0 | 0.28 | 1.52 | 0.89 | 0.86 | 2.03 | 55899 | 7109 | 20 | 0 | 52 | 0 | 0 | logfile |
✔ | 8S92 | 40235 | 2023-12-09 | 2023-03-27 | 4.06 | 4.32 | 4.09 | 4.3 | 0.004 | 0.68 | 0.0 | 0.04 | 14.72 | 0.01 | 2.043 | 6.52 | 0.00 | 13.5 | 86.1 | 0.4 | -2.24 | 0.74 | 0.80 | — | 4.3 | 0.003 | 0.63 | 0.0 | 0.04 | 14.65 | 0.00 | 2.276 | 6.56 | 0.00 | 13.4 | 86.2 | 0.4 | -2.29 | 0.38 | 0.75 | 0.81 | — | 12714 | 1590 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGV | 26497 | 2023-12-07 | 2022-03-25 | 2.94 | 3.59 | 2.94 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 9.13 | 0.00 | 2.111 | 3.29 | 0.00 | 0.7 | 99.3 | 0.0 | 2.34 | 0.50 | 0.85 | 4.24 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 12.67 | 0.00 | 2.212 | 5.33 | 0.93 | 0.7 | 99.3 | 0.0 | 3.03 | 1.30 | 0.51 | 0.87 | 2.79 | 3107 | 418 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7UH3 | 26504 | 2023-12-07 | 2022-03-25 | 2.99 | 3.63 | 2.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 10.05 | 0.00 | 1.909 | 4.09 | 0.00 | 2.0 | 98.0 | 0.0 | 0.91 | 0.48 | 0.84 | 2.83 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 13.54 | 0.00 | 2.188 | 8.97 | 1.24 | 2.2 | 97.8 | 0.0 | 1.59 | 1.02 | 0.50 | 0.86 | 1.53 | 3096 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |