Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZZ	20541	2021-08-09	2019-08-01	3.6	4.09	3.67	3.9	0.024	1.90	0.0	0.11	10.23	0.01	2.292	1.48	0.00	2.8	97.0	0.2	0.57	0.80	0.85	4.00	3.9	0.004	0.74	0.0	0.04	13.79	0.00	2.057	11.48	0.09	4.9	95.0	0.2	-0.30	1.64	0.79	0.85	3.06	19772	2464	16	0	48	0	0	logfile
✔	6UYE	20947	2021-08-08	2019-11-13	3.96	4.39	—	4.3	0.010	1.05	0.0	0.06	9.38	0.01	2.260	4.79	0.00	5.7	94.3	0.0	-3.06	0.77	0.81	2.44	4.3	0.006	0.85	0.0	0.05	14.84	0.01	2.169	14.58	0.49	5.7	94.3	0.0	-1.04	1.72	0.77	0.81	2.08	13692	1686	18	0	39	0	0	logfile
✔	6CE9	7462	2021-08-08	2018-02-11	4.3	4.83	—	4.4	0.007	1.01	0.0	0.06	9.85	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.003	0.70	0.0	0.05	10.94	0.00	2.281	13.09	0.00	9.2	90.8	0.0	-1.86	0.88	0.87	0.83	—	10782	1286	10	0	30	0	0	logfile
✔	6CEB	7463	2021-08-08	2018-02-11	4.7	5.92	—	4.7	0.006	0.98	0.0	0.06	9.53	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.004	0.72	0.0	0.05	10.86	0.00	2.127	21.94	0.00	11.0	89.0	0.0	-2.06	1.40	0.89	0.85	—	11722	1406	10	0	30	0	0	logfile
✔	6CBE	7452	2021-08-27	2018-02-02	2.78	2.88	—	3.9	0.010	0.81	0.0	0.05	9.59	0.01	2.147	9.53	0.00	1.9	98.1	0.0	-2.06	0.28	0.26	0.12	2.9	0.009	0.77	0.0	0.05	16.79	0.01	2.055	13.15	3.19	3.4	96.5	0.1	-0.87	3.92	0.69	0.88	4.49	248520	31080	60	0	0	0	0	logfile
✔	6V12	21010	2021-08-29	2019-11-19	3.08	3.47	—	3.4	0.011	0.79	0.0	0.05	8.52	0.00	2.086	9.56	0.00	1.9	98.1	0.0	-1.73	0.70	0.88	5.15	3.4	0.007	0.68	0.0	0.04	14.47	0.00	2.106	8.62	0.88	3.3	96.6	0.2	-0.68	0.57	0.69	0.88	4.44	248700	31260	60	0	0	0	0	logfile
✔	6SP2	10279	2021-08-08	2019-08-30	3.33	3.92	3.50	3.8	0.010	1.07	0.0	0.23	13.88	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.003	0.66	0.0	0.04	14.84	0.00	2.195	6.06	0.48	3.7	96.3	0.0	2.78	1.51	0.65	0.81	1.54	18498	2190	12	0	24	0	0	logfile
✘	5ooD	3837	2021-08-08	2017-08-07	3.7	3.73	3.79	3.7	0.016	1.63	0.0	0.07	12.61	0.02	1.149	7.23	0.00	5.5	92.0	2.5	-1.71	0.63	0.81	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile
✔	3JBS	6478	2021-08-07	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.67	0.0	0.04	17.78	0.00	2.328	6.55	1.97	1.7	98.3	0.0	1.16	1.33	0.21	0.80	3.51	1401	175	1	0	0	0	0	logfile
✔	6E7Y	9001	2021-08-08	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.18	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.6	0.003	0.71	0.0	0.04	14.43	0.00	2.337	5.69	0.35	5.0	95.0	0.0	-0.79	1.37	0.64	0.82	2.47	15508	1900	8	0	4	0	0	logfile
✘	6E7C	8998	2021-08-07	2018-07-25	3.65	3.83	3.42	3.8	0.008	0.86	0.0	0.04	12.40	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6780	854	4	0	4	0	0	logfile
✔	5US7	8604	2021-08-23	2017-02-13	2.8	3.07	—	3.9	0.010	1.15	0.0	0.07	10.63	0.01	1.998	25.45	0.00	15.6	82.1	2.4	-3.94	0.36	0.29	-0.07	3.0	0.007	1.14	2.0	0.05	16.87	0.01	1.775	21.84	2.73	15.5	82.5	2.0	-2.68	1.89	0.72	0.85	3.78	242340	30360	60	0	0	0	0	logfile
✔	5US9	8605	2021-08-24	2017-02-13	3.0	3.25	—	3.2	0.010	1.37	0.0	0.07	10.63	0.01	1.898	35.47	0.00	16.6	80.6	2.8	-4.40	0.71	0.83	4.39	3.2	0.006	1.11	0.0	0.06	16.92	0.01	2.013	22.26	3.26	18.8	78.5	2.7	-3.31	1.81	0.68	0.83	3.42	244620	30480	60	0	0	0	0	logfile
✔	6Q2R	20578	2021-08-10	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.78	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.74	0.0	0.04	11.58	0.00	2.019	20.71	0.00	7.3	92.7	0.0	-1.64	2.78	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	5FTL	3297	2021-08-10	2016-01-14	3.3	2.96	—	2.9	0.010	1.13	0.0	0.06	10.70	0.01	2.214	16.93	0.00	6.1	93.2	0.7	-4.22	0.69	0.81	2.28	2.9	0.004	0.76	0.0	0.05	16.13	0.01	2.132	10.78	0.30	5.8	94.0	0.1	-0.59	2.20	0.70	0.80	1.34	34278	4338	12	0	12	0	0	logfile
✔	6H05	0108	2021-08-11	2018-07-06	2.9	3.15	—	3.5	0.016	1.10	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.2	0.008	1.06	0.0	0.05	15.53	0.01	1.620	23.84	1.82	5.3	94.7	0.0	-1.71	2.15	0.62	0.54	1.19	44544	5664	24	0	0	0	0	logfile
✔	6F0K	4165	2021-08-11	2017-11-20	3.87	3.98	—	3.9	0.013	1.12	0.0	0.37	12.00	0.01	1.943	8.73	0.00	14.2	85.8	0.0	-5.22	0.65	0.72	1.34	3.9	0.005	0.75	0.0	0.07	15.35	0.00	1.893	16.33	0.53	11.0	89.0	0.0	-2.63	1.52	0.66	0.74	1.08	39868	2504	10	0	10	0	19577	logfile
✔	6MB3	9065	2021-08-08	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.28	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.004	0.69	0.0	0.04	14.00	0.00	2.193	7.32	0.17	5.9	94.0	0.0	-0.18	1.28	0.74	0.87	3.86	16423	2178	19	0	0	0	0	logfile
✔	6FHS	4264	2021-08-09	2018-01-15	3.754	3.89	—	3.8	0.005	0.85	0.0	0.05	9.73	0.01	2.249	4.25	0.00	6.5	93.5	0.0	-4.29	0.79	0.84	2.40	3.8	0.003	0.66	0.0	0.04	14.04	0.00	2.186	8.54	0.24	5.0	95.0	0.0	-0.98	0.76	0.81	0.85	1.73	27383	3510	17	0	7	0	0	logfile
✔	5TCP	8398	2021-08-10	2016-09-15	4.3	3.93	—	4.0	0.013	1.39	0.0	0.07	9.90	0.01	2.479	0.74	0.00	3.5	95.5	1.1	-0.87	0.77	0.79	—	4.0	0.006	0.69	0.0	0.04	13.02	0.00	2.215	7.24	0.00	3.7	96.1	0.3	1.45	0.92	0.81	0.85	—	72888	9072	48	0	0	0	0	logfile

• Page 1 of 276
• next →