Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RPo	4979	2022-07-06	2019-05-14	2.39	2.44	—	2.4	0.006	0.92	0.0	0.05	15.02	0.01	2.326	7.31	0.00	3.7	95.8	0.5	-2.67	0.72	0.86	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101400	12060	60	0	0	0	0	logfile
✔	6X14	21988	2022-07-03	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	16.45	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.9	0.007	0.86	0.0	0.04	16.77	0.00	2.188	7.97	0.00	3.0	97.0	0.0	0.10	1.15	0.61	0.83	1.32	9486	1239	6	0	9	0	0	logfile
✔	7JSH	22454	2022-07-03	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	7D7M	30608	2022-07-03	2020-10-05	3.3	2.94	3.16	3.3	0.004	0.64	0.0	0.06	14.43	0.00	2.208	10.14	0.00	1.3	98.7	0.0	0.14	0.64	0.75	2.13	3.3	0.004	0.67	0.0	0.04	15.22	0.01	2.178	9.57	0.59	2.1	97.9	0.0	0.71	0.53	0.62	0.76	1.54	7326	1031	6	0	1	0	0	logfile
✔	7KHW	22881	2022-07-04	2020-10-22	3.4	3.56	—	3.6	0.008	0.97	0.0	0.05	13.30	0.00	1.645	21.96	0.00	11.6	88.4	0.0	-1.82	0.60	0.77	1.48	3.6	0.009	0.91	3.0	0.04	15.88	0.00	2.057	8.15	0.11	7.2	92.8	0.0	0.48	0.53	0.67	0.80	1.51	65550	8700	50	0	0	0	0	logfile
✔	6VE3	21153	2022-07-05	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.46	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	4.4	0.003	0.83	0.0	0.05	6.53	0.00	2.137	7.70	0.00	8.0	92.0	0.0	-2.25	1.88	0.81	0.81	—	22484	4578	14	0	0	0	0	logfile
✔	6WYL	21968	2022-07-03	2020-05-13	3.9	3.99	—	4.0	0.012	0.91	0.0	0.05	11.33	0.01	2.237	3.66	0.00	2.7	97.3	0.0	-1.66	0.65	0.82	1.94	3.9	0.004	0.78	0.0	0.04	15.51	0.01	2.090	10.88	0.21	3.6	96.4	0.0	2.21	1.29	0.66	0.81	1.40	8847	1194	6	0	0	0	0	logfile
✔	6VE2	21152	2022-07-06	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✘	7K65	22689	2022-07-03	2020-09-18	3.4	3.95	3.54	3.9	0.003	0.61	0.0	0.04	13.43	0.00	1.391	8.37	0.00	2.9	97.1	0.0	-1.91	0.54	0.76	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8796	1120	4	0	11	0	0	logfile
✔	6YBP	10770	2022-07-07	2020-03-17	3.48	3.86	—	3.8	0.038	1.47	0.0	0.05	16.07	0.01	1.664	9.56	0.00	6.4	93.6	0.0	-2.69	0.74	0.85	2.36	3.8	0.004	0.60	0.0	0.04	16.24	0.00	2.188	7.95	0.27	4.4	95.6	0.0	-0.91	0.40	0.74	0.86	2.06	36410	4702	24	0	12	0	0	logfile
✔	7K4C	22664	2022-07-04	2020-09-15	3.78	4.46	—	4.3	0.009	1.09	0.0	0.06	11.45	0.01	2.296	5.38	0.00	11.4	88.5	0.2	-5.34	0.74	0.80	1.36	4.3	0.003	0.86	0.0	0.04	14.78	0.00	2.200	15.01	0.61	9.0	90.9	0.1	-2.10	0.98	0.73	0.78	0.98	19744	2444	8	0	7	0	0	logfile
✔	6K3o	9910	2022-07-06	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.77	0.82	2.46	31508	3790	48	0	36	0	0	logfile
✔	6WL0	21814	2022-07-03	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	7KiP	22889	2022-07-06	2020-10-24	3.39	4.00	3.47	3.9	0.009	0.90	0.0	0.06	8.62	0.01	2.290	1.91	0.00	7.9	92.1	0.1	-4.05	0.83	0.84	3.42	3.9	0.005	0.63	0.0	0.05	11.35	0.00	2.153	4.34	0.13	8.5	91.4	0.0	-1.57	0.57	0.84	0.87	2.86	30612	3576	69	0	222	0	0	logfile
✔	6X33	22016	2022-07-04	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.34	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.004	0.70	0.0	0.04	11.86	0.00	2.017	10.82	0.09	4.4	95.6	0.0	-0.11	0.68	0.59	0.74	—	112372	14796	16	0	1436	0	0	logfile
✔	7CZ5	30505	2022-07-03	2020-09-07	2.6	2.89	—	2.9	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.39	0.00	3.3	96.7	0.0	-2.04	0.60	0.80	4.16	2.9	0.003	0.55	0.0	0.04	15.98	0.00	2.155	6.08	1.46	2.9	97.1	0.0	0.19	0.44	0.62	0.83	2.89	8336	1046	11	0	3	3	0	logfile
✔	7JY5	22521	2022-07-06	2020-08-28	2.89	3.63	2.89	3.1	0.009	0.67	0.0	0.05	13.96	0.00	1.883	10.04	0.00	3.8	96.2	0.0	-0.30	0.85	0.81	2.64	3.1	0.002	0.55	0.0	0.04	14.86	0.00	1.935	8.73	0.51	2.0	98.0	0.0	1.63	0.45	0.87	0.86	2.07	34728	4386	12	0	24	0	0	logfile
✔	6XSS	22305	2022-07-03	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✔	6X15	21989	2022-07-03	2020-05-18	3.05	3.20	—	3.2	0.009	1.26	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.47	0.00	2.196	6.17	0.00	2.9	97.1	0.0	1.69	0.44	0.73	0.88	2.53	10026	1260	9	0	51	9	0	logfile
✘	6X17	21991	2022-07-03	2020-05-18	3.66	3.75	—	3.7	0.007	1.05	0.0	0.05	15.45	0.01	2.284	4.19	0.00	3.4	96.6	0.0	-3.74	0.64	0.85	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9390	1245	9	0	3	3	0	logfile

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