Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5US7	8604	2021-01-16	2017-02-13	2.8	3.07	—	3.9	0.010	1.15	0.0	0.07	10.63	0.01	1.998	25.45	0.00	15.6	82.1	2.4	-3.94	0.36	0.29	-0.07	3.0	0.005	0.99	0.0	0.05	12.73	0.01	2.006	19.42	0.02	15.7	82.2	2.1	-2.54	0.92	0.72	0.84	4.06	242340	30360	60	0	0	0	0	logfile
✔	6E7C	8998	2021-01-05	2018-07-25	3.65	3.83	3.42	3.8	0.008	0.81	0.0	0.05	12.42	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.003	0.69	0.0	0.04	14.13	0.00	2.049	15.31	0.00	3.9	96.1	0.0	-1.59	1.38	0.50	0.76	2.46	6780	854	4	0	4	0	0	logfile
✔	3J9G	2699	2021-01-10	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	1.93	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.85	3.1	0.004	0.68	0.0	0.04	14.32	0.01	2.084	9.80	0.06	2.9	96.9	0.1	0.63	1.20	0.42	0.80	2.54	132930	16710	60	0	0	0	0	logfile
✔	6SP2	10279	2021-01-06	2019-08-30	3.33	3.92	3.50	3.8	0.011	1.07	0.0	0.23	14.00	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.002	0.61	0.0	0.04	13.29	0.00	2.316	5.90	0.00	4.1	95.9	0.0	2.83	1.51	0.62	0.78	1.55	18498	2190	12	0	24	0	0	logfile
✔	6N1R	9318	2021-01-07	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.74	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.003	0.60	0.0	0.04	11.08	0.00	2.152	13.22	0.00	5.2	94.8	0.0	0.86	0.84	0.81	0.75	—	46044	5796	12	0	0	0	0	logfile
✔	6Q2R	20578	2021-01-06	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.78	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.003	0.71	0.0	0.04	11.68	0.00	2.067	18.55	0.00	6.4	93.6	0.0	-1.65	2.77	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	6KiX	0694	2021-01-06	2019-07-20	4.1	4.17	—	4.1	0.006	0.83	0.0	0.05	22.57	0.01	2.219	3.30	0.00	8.6	91.4	0.0	-3.74	0.71	0.73	—	4.1	0.003	0.58	0.0	0.04	22.97	0.00	2.190	9.38	0.00	4.1	95.9	0.0	-1.17	0.88	0.71	0.72	—	19900	1763	15	290	1	0	0	logfile
✔	6GC6	4381	2021-01-08	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.84	0.0	0.04	16.32	0.01	1.996	37.74	0.00	10.2	89.8	0.0	-2.55	2.23	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6H05	0108	2021-01-07	2018-07-06	2.9	3.15	—	3.5	0.016	1.10	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.74	0.0	0.04	11.30	0.00	2.037	11.92	0.13	3.4	96.6	0.0	-1.16	2.11	0.57	0.46	0.87	44544	5664	24	0	0	0	0	logfile
✔	6CVM	7770	2021-01-07	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.93	0.0	0.07	10.11	0.01	2.053	3.57	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.003	0.58	0.0	0.04	13.78	0.00	2.040	6.14	0.60	2.6	97.4	0.0	0.70	0.38	0.84	0.92	6.84	37062	4084	12	0	20	4194	0	logfile
✔	6KiW	0693	2021-01-06	2019-07-20	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	22.54	0.01	2.182	4.29	0.00	9.1	90.9	0.0	-3.96	0.70	0.74	—	4.0	0.003	0.64	0.0	0.04	23.05	0.00	2.102	11.74	0.00	7.6	92.4	0.0	-1.21	0.78	0.70	0.73	—	20225	1809	16	289	1	0	0	logfile
✔	6KiU	9998	2021-01-06	2019-07-20	3.2	3.29	—	3.2	0.007	0.85	0.0	0.05	21.97	0.01	2.178	3.22	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.004	0.61	0.0	0.04	23.03	0.00	2.104	7.81	0.00	5.8	94.2	0.0	-1.34	1.27	0.72	0.79	2.09	20503	1839	16	290	1	0	0	logfile
✔	5ooF	3839	2021-01-05	2017-08-07	3.4	3.53	3.41	3.5	0.015	1.54	0.0	0.08	11.80	0.02	2.010	2.86	0.00	6.3	91.0	2.7	-1.40	0.71	0.85	2.69	3.5	0.007	0.79	0.0	0.05	13.83	0.00	2.004	8.67	0.00	4.3	95.1	0.5	-0.19	2.16	0.70	0.86	2.58	14640	1855	10	0	10	0	0	logfile
✔	5FTL	3297	2021-01-07	2016-01-14	3.3	2.96	—	2.9	0.010	1.13	0.0	0.06	10.70	0.01	2.214	16.93	0.00	6.1	93.2	0.7	-4.22	0.69	0.81	2.28	2.9	0.004	0.79	0.0	0.05	14.77	0.01	2.008	10.58	0.00	7.0	92.8	0.1	-0.65	2.31	0.68	0.77	1.63	34278	4338	12	0	12	0	0	logfile
✔	6KiV	9999	2021-01-06	2019-07-20	4.0	4.16	—	4.0	0.007	0.89	0.0	0.05	22.53	0.01	2.263	5.16	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.63	0.0	0.04	23.13	0.00	2.097	11.88	0.06	5.6	94.4	0.0	-1.33	1.39	0.75	0.74	—	20719	1865	16	290	1	0	0	logfile
✔	6HRF	0260	2021-01-05	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.006	0.80	0.0	0.05	14.46	0.00	2.270	6.57	0.25	6.7	93.3	0.0	-3.47	3.76	0.37	0.77	3.84	3522	462	6	0	0	0	0	logfile
✔	5ooE	3838	2021-01-05	2017-08-07	3.6	3.72	3.50	3.7	0.016	1.60	0.0	0.07	11.01	0.02	1.939	3.24	0.00	4.8	93.2	2.0	-1.39	0.68	0.85	2.69	3.7	0.003	0.63	0.0	0.04	13.43	0.00	2.065	9.27	0.00	3.3	96.7	0.0	0.75	2.67	0.68	0.85	2.85	14310	1810	10	0	10	0	0	logfile
✔	6CoZ	7545	2021-01-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.004	0.88	0.0	0.04	6.14	0.00	2.319	9.28	0.00	17.9	82.1	0.0	-2.45	1.69	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6E7Y	9001	2021-01-06	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.12	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.6	0.003	0.64	0.0	0.04	12.73	0.00	2.295	6.08	0.00	5.7	94.3	0.0	-0.78	0.86	0.64	0.82	2.97	15508	1900	8	0	4	0	0	logfile
✔	5US9	8605	2021-01-16	2017-02-13	3.0	3.25	—	3.2	0.010	1.37	0.0	0.07	10.63	0.01	1.898	35.47	0.00	16.6	80.6	2.8	-4.40	0.71	0.83	4.39	3.2	0.004	1.05	38.0	0.06	12.84	0.01	2.046	22.16	0.03	17.8	79.2	3.0	-3.06	1.21	0.67	0.81	3.49	244620	30480	60	0	0	0	0	logfile

• Page 1 of 179
• next →