Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PFE	13373	2023-11-16	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.84	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.67	0.0	0.04	29.52	0.00	2.116	16.48	0.00	2.9	97.1	0.0	0.80	1.61	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	6ZNN	11318	2023-11-17	2020-07-06	4.5	5.10	4.05	4.4	0.014	1.77	0.0	0.09	13.07	0.00	1.790	1.74	0.00	7.7	92.2	0.1	-3.13	0.78	0.72	—	4.4	0.003	0.72	0.0	0.04	12.89	0.00	2.134	15.08	0.00	5.1	94.8	0.1	-0.21	0.99	0.81	0.82	—	19457	2320	17	0	328	0	0	logfile
✔	8G0D	29654	2023-11-17	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	6.88	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.007	0.88	0.0	0.09	7.08	0.00	1.754	3.95	0.00	10.8	89.2	0.1	-0.16	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	5ooF	3839	2023-11-16	2017-08-07	3.4	3.53	3.41	3.5	0.015	1.53	0.0	0.08	11.81	0.02	2.010	3.30	0.00	6.3	91.0	2.7	-1.40	0.71	0.85	2.69	3.5	0.003	0.67	0.0	0.04	15.42	0.00	2.025	9.02	0.26	3.1	96.4	0.5	0.56	1.81	0.70	0.87	1.90	14640	1855	10	0	10	0	0	logfile
✔	8D4B	27180	2023-11-15	2022-06-01	2.92	3.58	2.96	3.3	0.005	0.70	0.0	0.04	13.61	0.00	1.942	5.37	0.00	2.2	97.8	0.0	-1.63	0.86	0.83	4.41	3.3	0.003	0.52	0.0	0.04	14.90	0.00	2.157	9.52	0.67	2.2	97.8	0.0	0.95	0.52	0.84	0.87	3.33	11010	1166	3	69	0	0	0	logfile
✔	7PF6	13369	2023-11-16	2021-08-11	4.0	4.89	—	3.7	0.006	0.99	0.0	0.06	29.66	0.01	2.268	7.80	0.00	1.9	98.1	0.0	-0.75	0.87	0.76	—	3.7	0.005	0.82	0.0	0.06	30.49	0.00	1.989	25.24	0.29	3.8	96.2	0.0	0.10	1.73	0.87	0.78	—	13470	843	11	334	0	0	0	logfile
✔	7N74	24219	2023-11-14	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.57	0.0	0.04	14.64	0.00	2.167	4.93	2.06	1.9	98.1	0.0	2.39	0.54	0.68	0.82	2.46	7859	1036	1	0	4	3	0	logfile
✔	7E23	30950	2023-11-13	2021-02-04	3.3	3.62	—	3.6	0.004	0.83	0.0	0.05	14.45	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.004	0.75	0.0	0.05	16.24	0.01	2.162	14.04	0.30	14.2	85.5	0.3	-3.04	1.16	0.71	0.80	1.62	3133	403	4	0	1	0	0	logfile
✔	6X32	22015	2023-11-15	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	7PFD	13372	2023-11-16	2021-08-11	4.4	7.91	—	3.8	0.006	0.92	0.0	0.05	29.97	0.01	2.245	6.72	0.00	2.1	97.9	0.0	-0.57	0.89	0.77	—	3.8	0.005	0.73	0.0	0.04	31.24	0.01	2.120	25.00	0.00	3.2	96.8	0.0	0.14	1.82	0.89	0.70	—	13675	843	11	344	0	0	0	logfile
✔	7PSD	13612	2023-11-14	2021-09-22	3.0	3.33	2.96	3.2	0.015	1.12	0.0	0.07	14.39	0.01	2.146	7.65	0.00	5.5	94.5	0.0	-1.38	0.70	0.87	2.60	3.2	0.003	0.61	0.0	0.04	15.97	0.00	2.263	9.84	1.77	2.7	97.3	0.0	1.97	0.45	0.62	0.85	2.41	9032	1160	2	0	0	0	0	logfile
✔	5VN8	8717	2023-11-17	2017-04-28	3.6	3.72	3.44	3.6	0.007	1.18	0.0	0.07	8.19	0.01	2.246	5.66	0.00	12.4	86.9	0.6	-4.89	0.72	0.77	1.93	3.6	0.003	0.74	0.0	0.05	14.61	0.00	2.213	11.13	0.38	8.6	91.3	0.1	-2.21	1.57	0.74	0.80	1.86	20589	2427	51	0	114	0	0	logfile
✔	7PFF	13374	2023-11-16	2021-08-11	4.3	7.61	—	3.8	0.006	0.92	0.0	0.05	30.38	0.01	2.286	8.26	0.00	1.6	98.4	0.0	-0.07	0.90	0.79	—	3.7	0.006	0.74	0.0	0.04	31.51	0.01	2.152	29.89	0.00	4.5	95.5	0.0	0.49	1.84	0.90	0.82	—	12935	768	10	334	0	0	0	logfile
✔	5ooE	3838	2023-11-16	2017-08-07	3.6	3.72	3.50	3.7	0.016	1.64	0.0	0.07	10.52	0.02	1.939	3.56	0.00	4.8	93.2	2.0	-1.39	0.68	0.85	2.69	3.7	0.004	0.65	0.0	0.04	15.30	0.00	1.995	10.22	0.20	3.2	96.8	0.0	0.43	2.68	0.68	0.85	2.43	14310	1810	10	0	10	0	0	logfile
✔	7P03	13142	2023-11-18	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.004	0.57	0.0	0.04	15.79	0.00	1.838	7.61	0.17	4.4	95.6	0.0	0.48	0.89	0.64	0.78	1.93	21149	1333	1	0	0	0	10498	logfile
✔	7LPA	23474	2023-11-17	2021-02-11	3.37	3.43	3.23	3.5	0.009	0.88	0.0	0.05	17.79	0.00	2.201	7.90	0.00	4.1	95.9	0.0	-0.82	0.56	0.75	2.45	3.5	0.005	0.60	0.0	0.04	16.54	0.00	2.244	6.93	0.84	3.7	96.3	0.0	0.50	0.36	0.62	0.75	2.08	18634	2392	8	0	30	0	0	logfile
✔	7K2T	22644	2023-11-15	2020-09-09	3.6	3.72	—	3.7	0.005	0.78	0.0	0.04	13.98	0.00	1.955	9.52	0.00	4.4	95.6	0.0	-3.30	0.69	0.84	2.63	3.7	0.003	0.64	0.0	0.04	16.25	0.00	1.912	9.68	0.45	3.7	96.3	0.0	-0.65	0.68	0.69	0.84	1.98	10275	1249	6	0	4	0	0	logfile
✔	7N70	24214	2023-11-14	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.73	0.0	0.05	13.21	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.57	0.0	0.04	15.15	0.00	1.920	7.56	1.15	1.5	98.5	0.0	1.67	0.46	0.63	0.78	2.06	7953	1032	1	0	4	0	0	logfile
✔	7RLD	24526	2023-11-21	2021-07-23	3.4	3.68	—	3.1	0.002	0.66	0.0	0.04	14.57	0.00	1.692	7.65	0.00	3.8	96.0	0.1	-1.35	0.87	0.78	1.31	3.2	0.006	0.76	0.0	0.05	15.23	0.00	2.020	13.20	0.24	5.2	94.8	0.0	-0.58	1.63	0.90	0.87	2.08	34854	4410	12	0	12	0	0	logfile
✔	7N78	24223	2023-11-14	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.96	0.0	0.06	12.83	0.01	1.930	8.14	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.003	0.61	0.0	0.04	13.79	0.00	2.008	6.24	1.09	1.9	98.1	0.0	2.24	0.43	0.64	0.76	1.67	7669	1030	1	0	11	3	0	logfile

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