Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y9A	10734	2021-05-03	2020-03-06	4.2	5.61	—	5.7	0.004	0.82	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.45	—	5.6	0.003	0.79	0.0	0.05	13.42	0.01	2.175	17.52	0.00	5.9	94.1	0.0	-0.14	1.50	0.56	0.67	—	5948	776	4	0	0	0	0	logfile
✔	6ZNN	11318	2021-05-04	2020-07-06	4.5	5.10	4.05	4.4	0.014	1.77	0.0	0.09	13.07	0.00	1.790	1.72	0.00	7.7	92.2	0.1	-3.13	0.78	0.72	—	4.4	0.003	0.70	0.0	0.04	12.92	0.00	2.079	16.34	0.05	5.9	94.0	0.1	-0.29	1.06	0.81	0.82	—	19457	2320	17	0	328	0	0	logfile
✔	6XDG	22137	2021-05-03	2020-06-10	3.9	4.70	—	4.4	0.004	0.68	0.0	0.04	12.89	0.00	2.127	18.92	0.00	9.8	89.8	0.4	-3.87	0.86	0.76	1.61	4.4	0.003	0.79	0.0	0.04	15.61	0.01	2.160	16.38	0.45	7.5	92.2	0.3	-1.71	0.76	0.87	0.78	1.10	8004	1043	6	0	4	0	0	logfile
✔	6LT0	0966	2021-05-04	2020-01-21	3.2	3.27	—	3.2	0.005	1.08	0.0	0.06	11.86	0.01	1.898	5.81	0.00	13.3	86.4	0.3	-5.35	0.59	0.57	1.80	3.2	0.005	0.84	0.0	0.05	16.19	0.01	2.106	14.73	0.61	10.7	89.2	0.1	-2.68	1.16	0.68	0.74	1.72	17774	2228	6	0	0	0	0	logfile
✔	6SiH	10210	2021-05-06	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.003	0.58	0.0	0.04	13.47	0.00	2.024	12.22	0.00	4.8	95.2	0.0	1.35	1.59	0.88	0.79	—	37310	4880	10	0	0	0	0	logfile
✔	7C7Q	30300	2021-05-04	2020-05-26	3.0	2.39	—	3.1	0.004	0.74	0.0	0.07	11.53	0.01	2.144	7.15	0.00	3.8	96.2	0.0	-2.81	0.78	0.76	3.24	2.1	0.005	0.72	0.0	0.05	15.04	0.01	2.156	8.65	1.96	4.6	95.4	0.0	-0.38	1.15	0.78	0.76	2.67	10894	1348	4	0	10	0	0	logfile
✔	6WQ0	21867	2021-05-07	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.59	0.0	0.04	15.01	0.00	2.270	3.87	0.95	0.8	99.2	0.0	3.24	1.11	0.59	0.90	3.69	57467	6026	48	602	0	0	0	logfile
✔	6ZNM	11317	2021-05-04	2020-07-06	4.1	4.41	3.90	4.1	0.013	1.75	0.0	0.09	13.25	0.00	1.790	1.77	0.00	7.2	92.6	0.1	-2.56	0.77	0.75	—	4.1	0.004	0.71	0.0	0.04	12.97	0.00	2.053	12.18	0.00	4.7	95.2	0.1	-0.03	0.96	0.81	0.84	—	19253	2470	15	0	138	0	0	logfile
✔	6VMS	21243	2021-05-03	2020-01-28	3.8	3.48	—	3.7	0.023	0.96	0.0	0.09	11.06	0.00	2.082	5.60	0.00	2.3	97.7	0.0	-0.27	0.57	0.71	1.53	3.6	0.004	0.89	0.0	0.04	15.99	0.01	2.130	13.40	0.10	4.2	95.8	0.0	0.37	1.32	0.65	0.85	2.20	8953	1135	5	0	1	0	0	logfile
✔	7JM3	22384	2021-05-15	2020-07-30	3.4	3.43	—	3.4	0.013	0.96	0.0	0.06	15.30	0.01	0.521	21.42	0.00	10.1	89.5	0.4	-6.47	0.55	0.72	1.95	3.4	0.006	0.77	0.0	0.04	17.71	0.01	1.901	13.38	0.44	8.1	91.6	0.4	-1.48	1.53	0.59	0.81	2.64	235260	15060	60	0	0	0	118860	logfile
✔	6VZ1	21481	2021-05-03	2020-02-27	3.2	3.35	—	3.4	0.016	1.51	0.0	0.06	19.74	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.67	0.0	0.04	17.39	0.00	2.179	8.30	0.14	5.3	94.7	0.0	-0.55	0.99	0.57	0.84	2.37	7112	822	4	0	6	0	0	logfile
✔	6NTS	0510	2021-05-03	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.28	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.41	0.00	1.738	7.03	0.00	2.5	97.5	0.0	0.88	2.54	0.92	0.84	1.32	9956	1240	5	0	3	0	0	logfile
✔	6WJ6	21690	2021-05-04	2020-04-12	2.58	2.50	—	2.7	0.024	2.71	0.0	0.08	18.30	0.02	2.082	12.63	0.00	2.1	97.8	0.1	-3.58	0.69	0.84	4.27	2.7	0.005	0.65	0.0	0.05	18.06	0.01	2.128	11.52	1.69	2.4	97.6	0.0	0.63	0.41	0.69	0.84	3.65	18884	1901	32	0	70	198	0	logfile
✔	6W8X	21579	2021-05-05	2020-03-21	3.4	3.77	—	3.6	0.005	0.59	0.0	0.05	11.44	0.00	2.038	8.22	0.00	4.3	95.7	0.0	-2.19	0.59	0.85	2.04	3.6	0.004	0.60	0.0	0.05	13.33	0.00	2.082	7.43	0.21	2.9	97.1	0.0	-0.11	0.36	0.59	0.86	1.99	29766	4356	33	0	0	0	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	7C7S	30301	2021-05-04	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.72	0.01	2.153	7.81	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.70	0.0	0.04	15.80	0.01	2.163	9.05	3.22	4.2	95.8	0.0	-0.18	0.58	0.83	0.81	2.65	10915	1355	4	0	9	0	0	logfile
✘	6VYi	21461	2021-05-03	2020-02-26	3.0	3.28	—	3.2	0.012	1.20	0.0	0.05	18.80	0.00	2.157	10.51	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6916	812	4	0	4	0	0	logfile
✔	6UW4	20917	2021-05-04	2019-11-04	3.1	3.24	—	3.2	0.010	0.97	0.0	0.06	17.92	0.01	2.280	3.97	0.00	5.8	94.2	0.0	-4.45	0.72	0.84	1.94	3.2	0.002	0.56	0.0	0.04	16.57	0.00	2.179	6.32	0.23	5.5	94.5	0.0	0.21	0.48	0.71	0.84	1.22	20281	2412	8	0	21	0	0	logfile
✔	6WYJ	21966	2021-05-03	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.58	0.0	0.04	14.64	0.00	2.306	4.76	0.64	1.5	98.5	0.0	2.31	1.19	0.62	0.80	1.59	2949	398	1	0	0	0	0	logfile
✔	6UD3	20731	2021-05-04	2019-09-18	3.5	4.06	3.46	3.8	0.014	1.59	0.0	0.10	11.86	0.01	2.293	7.28	0.00	4.6	95.4	0.0	-1.90	0.79	0.78	1.69	3.8	0.006	0.88	0.0	0.05	15.19	0.01	2.073	18.14	1.02	5.3	94.7	0.0	0.31	2.09	0.81	0.82	2.00	14346	1765	10	0	6	0	0	logfile

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