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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WCM | 32424 | 2023-07-04 | 2021-12-20 | 2.33 | 2.14 | — | 2.2 | 0.005 | 0.70 | 0.0 | 0.16 | 14.13 | 0.00 | 2.281 | 3.66 | 0.00 | 2.5 | 97.5 | 0.0 | 1.05 | 0.64 | 0.84 | 4.03 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 15.98 | 0.00 | 2.281 | 3.30 | 1.02 | 2.0 | 98.0 | 0.0 | 1.56 | 0.31 | 0.63 | 0.87 | 4.04 | 8232 | 1047 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XDG | 22137 | 2023-07-05 | 2020-06-10 | 3.9 | 4.70 | — | 4.4 | 0.004 | 0.70 | 0.0 | 0.05 | 12.95 | 0.00 | 2.127 | 19.43 | 0.00 | 9.8 | 89.8 | 0.4 | -3.87 | 0.86 | 0.76 | 1.61 | 4.4 | 0.003 | 0.75 | 0.0 | 0.04 | 15.08 | 0.00 | 2.169 | 16.82 | 0.22 | 7.4 | 92.4 | 0.2 | -1.45 | 0.66 | 0.86 | 0.77 | 1.60 | 8004 | 1043 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SQ8 | 25379 | 2023-07-07 | 2021-11-04 | 2.598 | 2.10 | — | 2.5 | 0.004 | 0.55 | 0.0 | 0.04 | 13.37 | 0.00 | 2.199 | 3.68 | 0.00 | 3.3 | 96.7 | 0.0 | 1.93 | 0.64 | 0.86 | 4.26 | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 15.53 | 0.00 | 2.225 | 4.23 | 1.39 | 2.7 | 97.3 | 0.0 | 2.27 | 0.38 | 0.64 | 0.88 | 4.02 | 15117 | 1852 | 13 | 0 | 9 | 8 | 0 | logfile |
✔ | 6SP2 | 10279 | 2023-07-09 | 2019-08-30 | 3.33 | 3.92 | 3.50 | 3.8 | 0.006 | 0.85 | 0.0 | 0.05 | 15.17 | 0.00 | 1.590 | 8.11 | 0.00 | 4.7 | 95.3 | 0.0 | -0.56 | 0.49 | 0.67 | 2.32 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 14.94 | 0.00 | 2.211 | 5.77 | 0.27 | 4.1 | 95.9 | 0.0 | 2.68 | 1.49 | 0.63 | 0.80 | 1.47 | 18498 | 2190 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2023-07-03 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.47 | 0.0 | 0.03 | 12.80 | 0.00 | 1.958 | 77.81 | 0.00 | 4.3 | 95.7 | 0.0 | 1.53 | 1.24 | 0.66 | 0.69 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 7M6S | 23706 | 2023-07-07 | 2021-03-26 | 3.61 | 4.62 | 3.61 | 3.9 | 0.008 | 1.49 | 0.0 | 0.09 | 12.34 | 0.01 | 2.269 | 6.38 | 0.00 | 3.1 | 96.9 | 0.0 | 1.92 | 0.87 | 0.78 | 1.08 | 3.9 | 0.003 | 0.84 | 0.0 | 0.05 | 15.03 | 0.00 | 2.190 | 15.35 | 0.25 | 3.5 | 96.5 | 0.0 | 0.25 | 1.42 | 0.89 | 0.83 | 0.85 | 14625 | 1790 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 8GVA | 34289 | 2023-07-04 | 2022-09-14 | 3.25 | 3.43 | 3.24 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.13 | 0.00 | 2.259 | 5.49 | 0.00 | 5.6 | 94.4 | 0.0 | -0.61 | 0.64 | 0.81 | 2.22 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.23 | 0.00 | 2.197 | 5.86 | 0.23 | 4.9 | 95.1 | 0.0 | 0.93 | 0.37 | 0.61 | 0.81 | 1.42 | 8072 | 1022 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LT0 | 0966 | 2023-07-08 | 2020-01-21 | 3.2 | 3.27 | — | 3.2 | 0.005 | 1.08 | 0.0 | 0.06 | 11.86 | 0.01 | 1.898 | 5.84 | 0.00 | 13.3 | 86.4 | 0.3 | -5.35 | 0.59 | 0.57 | 1.80 | 3.2 | 0.005 | 0.83 | 0.0 | 0.05 | 16.01 | 0.00 | 2.076 | 15.57 | 0.92 | 11.9 | 88.0 | 0.1 | -2.82 | 1.07 | 0.67 | 0.75 | 1.68 | 17774 | 2228 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MSX | 23971 | 2023-07-03 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 4.88 | 0.25 | 1.9 | 98.1 | 0.0 | 1.12 | 1.12 | 0.78 | 0.88 | 3.52 | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7W2J | 32262 | 2023-07-08 | 2021-11-24 | 3.6 | 2.90 | — | 3.6 | 0.030 | 1.49 | 0.0 | 0.56 | 15.43 | 0.01 | 2.011 | 18.00 | 0.00 | 11.0 | 88.7 | 0.4 | -2.64 | 0.65 | 0.79 | 1.96 | 3.6 | 0.004 | 1.13 | 0.0 | 0.06 | 16.76 | 0.00 | 1.809 | 12.79 | 0.65 | 5.4 | 94.4 | 0.2 | -0.75 | 0.37 | 0.63 | 0.76 | 1.48 | 16522 | 2104 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7K7H | 22699 | 2023-07-04 | 2020-09-22 | 3.0 | 3.57 | 2.98 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 13.31 | 0.00 | 2.281 | 8.54 | 0.00 | 8.1 | 91.9 | 0.0 | -5.02 | 0.75 | 0.80 | 3.30 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 16.54 | 0.00 | 2.062 | 9.42 | 2.70 | 6.1 | 93.9 | 0.0 | -1.66 | 0.71 | 0.71 | 0.84 | 3.04 | 6323 | 816 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VMS | 21243 | 2023-07-05 | 2020-01-28 | 3.8 | 3.48 | — | 3.7 | 0.013 | 0.83 | 0.0 | 0.04 | 10.98 | 0.00 | 2.082 | 5.72 | 0.00 | 2.3 | 97.7 | 0.0 | -0.27 | 0.57 | 0.71 | 1.53 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.61 | 0.00 | 2.104 | 14.40 | 0.31 | 3.8 | 96.2 | 0.0 | 0.31 | 1.31 | 0.65 | 0.83 | 2.16 | 8953 | 1135 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RD6 | 24413 | 2023-07-04 | 2021-07-09 | 3.25 | 3.44 | — | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.65 | 0.00 | 2.183 | 9.73 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.56 | 0.70 | 2.23 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.29 | 0.00 | 2.135 | 14.09 | 0.12 | 6.0 | 94.0 | 0.0 | -1.38 | 0.42 | 0.57 | 0.73 | 2.17 | 7396 | 929 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7L5W | 23191 | 2023-07-20 | 2020-12-23 | 3.34 | 3.25 | — | 3.6 | 0.006 | 1.01 | 0.0 | 0.06 | 14.60 | 0.01 | 2.172 | 11.17 | 0.00 | 6.8 | 93.2 | 0.0 | -2.74 | 0.70 | 0.77 | 2.23 | 3.6 | 0.003 | 0.63 | 0.0 | 0.05 | 16.48 | 0.00 | 2.033 | 14.35 | 0.22 | 6.0 | 94.0 | 0.0 | -0.34 | 0.56 | 0.70 | 0.78 | 1.75 | 51828 | 6636 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZRV | 14922 | 2023-07-13 | 2022-05-05 | 2.8 | 3.68 | 3.14 | 3.4 | 0.004 | 0.63 | 0.0 | 0.05 | 13.45 | 0.00 | 2.089 | 9.52 | 0.00 | 4.7 | 95.1 | 0.2 | -0.19 | 0.79 | 0.82 | 2.37 | 3.4 | 0.003 | 0.65 | 0.0 | 0.05 | 15.13 | 0.00 | 2.110 | 11.44 | 1.51 | 5.4 | 94.4 | 0.1 | -0.33 | 0.43 | 0.75 | 0.80 | 2.16 | 28055 | 3429 | 38 | 0 | 88 | 0 | 0 | logfile |
✔ | 8E5B | 27909 | 2023-07-09 | 2022-08-20 | 3.3 | 3.38 | 3.29 | 3.4 | 0.005 | 0.58 | 0.0 | 0.11 | 14.62 | 0.00 | 2.181 | 6.78 | 0.00 | 4.7 | 95.3 | 0.0 | -0.27 | 0.60 | 0.81 | 2.63 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 16.23 | 0.00 | 2.101 | 7.39 | 0.32 | 5.1 | 94.9 | 0.0 | -0.24 | 0.32 | 0.61 | 0.85 | 2.06 | 20310 | 2502 | 10 | 0 | 18 | 0 | 0 | logfile |
✔ | 7PY5 | 13713 | 2023-07-14 | 2021-10-09 | 3.9 | 4.34 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 14.71 | 0.00 | 2.071 | 8.67 | 0.00 | 5.4 | 94.6 | 0.0 | -1.41 | 0.80 | 0.79 | 1.13 | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.58 | 0.00 | 1.942 | 11.47 | 0.21 | 5.5 | 94.5 | 0.0 | -0.54 | 0.47 | 0.78 | 0.79 | 1.14 | 29959 | 3832 | 11 | 67 | 3 | 0 | 0 | logfile |
✔ | 7V9X | 31829 | 2023-07-05 | 2021-08-27 | 2.82 | 3.18 | — | 3.1 | 0.005 | 0.63 | 0.0 | 0.04 | 21.16 | 0.00 | 2.241 | 6.09 | 0.00 | 4.0 | 96.0 | 0.0 | 0.17 | 0.75 | 0.85 | 3.29 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 22.00 | 0.00 | 2.233 | 6.35 | 0.88 | 3.3 | 96.7 | 0.0 | 0.70 | 0.88 | 0.72 | 0.85 | 2.86 | 10550 | 760 | 9 | 210 | 0 | 0 | 0 | logfile |
✔ | 7RHG | 24460 | 2023-07-07 | 2021-07-17 | 2.88 | 2.68 | — | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.36 | 0.00 | 2.196 | 5.80 | 0.00 | 1.7 | 98.3 | 0.0 | 0.74 | 0.69 | 0.87 | 3.86 | 2.8 | 0.003 | 0.49 | 0.0 | 0.04 | 17.08 | 0.00 | 2.130 | 7.79 | 0.93 | 1.5 | 98.5 | 0.0 | 2.09 | 0.33 | 0.69 | 0.89 | 3.75 | 14753 | 1790 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7A8Z | 11680 | 2023-07-04 | 2020-08-31 | 3.35 | 3.81 | 3.38 | 3.7 | 0.004 | 0.59 | 0.0 | 0.04 | 14.41 | 0.00 | 2.254 | 7.18 | 0.00 | 7.6 | 92.3 | 0.1 | -1.49 | 0.68 | 0.75 | 3.00 | 3.8 | 0.003 | 0.55 | 0.0 | 0.04 | 15.59 | 0.00 | 2.282 | 6.45 | 0.24 | 6.6 | 93.4 | 0.1 | -0.27 | 1.50 | 0.72 | 0.79 | 2.62 | 8402 | 1103 | 2 | 0 | 0 | 0 | 0 | logfile |