Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W0B	32237	2023-02-20	2021-11-18	3.33	3.61	—	3.5	0.003	0.60	0.0	0.04	14.32	0.00	2.049	11.71	0.00	5.0	94.9	0.1	0.14	0.84	0.79	1.45	3.5	0.003	0.63	0.0	0.04	16.03	0.00	2.154	12.02	0.14	4.4	95.5	0.1	0.34	0.46	0.84	0.79	1.67	12997	1602	2	0	0	0	0	logfile
✔	6PoM	20416	2023-02-17	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.46	0.01	1.930	61.80	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	6VX5	21430	2023-02-20	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	7SMS	25207	2023-02-22	2021-10-26	3.18	3.33	—	3.3	0.006	0.73	0.0	0.05	15.02	0.00	2.187	5.21	0.00	2.8	97.2	0.0	1.21	0.78	0.85	3.74	3.3	0.004	0.53	0.0	0.04	15.07	0.00	2.203	6.38	0.27	2.3	97.7	0.0	1.69	0.40	0.79	0.86	3.50	17051	2015	15	0	32	0	0	logfile
✔	7Z7i	14533	2023-02-21	2022-03-15	3.5	4.18	3.47	3.8	0.014	1.07	0.0	0.07	14.69	0.01	1.952	3.82	0.00	5.7	94.3	0.0	-2.47	0.75	0.81	3.12	3.8	0.003	0.70	0.0	0.04	15.61	0.00	1.885	3.51	0.13	3.7	96.3	0.0	-0.02	0.70	0.75	0.83	2.48	14815	1855	10	0	15	0	0	logfile
✔	8AUR	15673	2023-02-17	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.004	0.66	0.0	0.04	16.10	0.00	2.233	7.09	0.00	9.4	90.5	0.1	-1.38	1.66	0.71	0.83	2.56	5409	699	3	0	0	0	0	logfile
✔	6W18	21503	2023-02-20	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.33	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7ZXY	15017	2023-02-21	2022-05-23	3.15	2.97	3.04	3.0	0.006	0.94	0.0	0.05	15.11	0.01	2.106	10.70	0.00	3.5	96.5	0.0	-0.44	0.74	0.81	3.20	3.0	0.003	0.70	0.0	0.04	15.36	0.00	2.080	9.40	0.26	3.2	96.8	0.0	0.35	0.31	0.74	0.84	2.80	15606	1913	25	0	23	0	0	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7PKo	13474	2023-02-23	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.06	0.00	2.180	12.19	0.62	5.6	94.4	0.0	-0.75	0.64	0.75	0.81	2.41	20368	2504	8	0	0	0	0	logfile
✔	7D10	30542	2023-02-17	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	7NS4	12560	2023-02-17	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.003	0.63	0.0	0.04	15.99	0.00	2.210	7.87	0.51	8.2	91.8	0.0	0.54	0.36	0.74	0.83	2.20	5465	698	4	0	2	0	0	logfile
✔	6HUJ	0279	2023-02-21	2018-10-08	3.04	3.16	3.04	3.1	0.005	0.86	0.0	0.06	8.71	0.01	2.265	4.61	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	3.1	0.005	0.60	0.0	0.04	13.75	0.00	2.161	7.75	0.31	3.5	96.5	0.0	-0.11	0.65	0.76	0.87	4.18	15255	1812	15	0	35	0	0	logfile
✔	7L49	23158	2023-02-20	2020-12-18	3.1	3.16	—	3.1	0.005	0.95	0.0	0.06	18.53	0.01	2.220	6.19	0.00	8.6	91.4	0.0	-3.90	0.74	0.76	2.18	3.2	0.003	0.55	0.0	0.04	18.60	0.00	2.164	12.59	0.22	7.3	92.7	0.0	-0.56	1.17	0.76	0.82	2.70	12414	1041	8	191	4	0	0	logfile
✔	6B3J	7039	2023-02-18	2017-09-22	3.3	3.63	3.26	3.5	0.007	1.00	0.0	0.06	9.89	0.01	2.229	4.31	0.00	4.2	95.8	0.0	0.60	0.66	0.73	2.35	3.5	0.003	0.66	0.0	0.04	14.91	0.00	2.186	12.43	0.31	4.3	95.7	0.0	0.92	1.71	0.70	0.78	1.51	9034	1129	6	0	0	0	0	logfile
✔	7VHQ	32003	2023-02-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.004	0.63	0.0	0.04	15.43	0.00	2.148	10.42	0.61	4.1	95.9	0.0	1.79	0.42	0.74	0.85	1.46	16650	2076	12	0	0	0	0	logfile
✔	5L08	8300	2023-02-21	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.5	0.006	1.23	0.0	0.06	14.56	0.01	1.854	41.71	0.00	6.7	93.3	0.0	-3.29	3.82	0.26	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	6PEK	20327	2023-02-20	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6GKH	0023	2023-02-19	2018-05-21	4.06	4.18	3.92	4.1	0.006	1.49	0.0	0.05	9.62	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.004	1.06	0.0	0.04	12.18	0.00	1.774	25.31	0.16	10.2	89.8	0.0	-1.11	1.88	0.61	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile

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