Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WCM	32424	2023-07-04	2021-12-20	2.33	2.14	—	2.2	0.005	0.70	0.0	0.16	14.13	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.002	0.55	0.0	0.04	15.98	0.00	2.281	3.30	1.02	2.0	98.0	0.0	1.56	0.31	0.63	0.87	4.04	8232	1047	5	0	1	0	0	logfile
✔	6XDG	22137	2023-07-05	2020-06-10	3.9	4.70	—	4.4	0.004	0.70	0.0	0.05	12.95	0.00	2.127	19.43	0.00	9.8	89.8	0.4	-3.87	0.86	0.76	1.61	4.4	0.003	0.75	0.0	0.04	15.08	0.00	2.169	16.82	0.22	7.4	92.4	0.2	-1.45	0.66	0.86	0.77	1.60	8004	1043	6	0	4	0	0	logfile
✔	7SQ8	25379	2023-07-07	2021-11-04	2.598	2.10	—	2.5	0.004	0.55	0.0	0.04	13.37	0.00	2.199	3.68	0.00	3.3	96.7	0.0	1.93	0.64	0.86	4.26	2.5	0.003	0.52	0.0	0.04	15.53	0.00	2.225	4.23	1.39	2.7	97.3	0.0	2.27	0.38	0.64	0.88	4.02	15117	1852	13	0	9	8	0	logfile
✔	6SP2	10279	2023-07-09	2019-08-30	3.33	3.92	3.50	3.8	0.006	0.85	0.0	0.05	15.17	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.003	0.66	0.0	0.04	14.94	0.00	2.211	5.77	0.27	4.1	95.9	0.0	2.68	1.49	0.63	0.80	1.47	18498	2190	12	0	24	0	0	logfile
✔	7JGG	22326	2023-07-03	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7M6S	23706	2023-07-07	2021-03-26	3.61	4.62	3.61	3.9	0.008	1.49	0.0	0.09	12.34	0.01	2.269	6.38	0.00	3.1	96.9	0.0	1.92	0.87	0.78	1.08	3.9	0.003	0.84	0.0	0.05	15.03	0.00	2.190	15.35	0.25	3.5	96.5	0.0	0.25	1.42	0.89	0.83	0.85	14625	1790	10	0	5	0	0	logfile
✔	8GVA	34289	2023-07-04	2022-09-14	3.25	3.43	3.24	3.4	0.004	0.68	0.0	0.04	14.13	0.00	2.259	5.49	0.00	5.6	94.4	0.0	-0.61	0.64	0.81	2.22	3.4	0.003	0.61	0.0	0.04	16.23	0.00	2.197	5.86	0.23	4.9	95.1	0.0	0.93	0.37	0.61	0.81	1.42	8072	1022	2	0	0	0	0	logfile
✔	6LT0	0966	2023-07-08	2020-01-21	3.2	3.27	—	3.2	0.005	1.08	0.0	0.06	11.86	0.01	1.898	5.84	0.00	13.3	86.4	0.3	-5.35	0.59	0.57	1.80	3.2	0.005	0.83	0.0	0.05	16.01	0.00	2.076	15.57	0.92	11.9	88.0	0.1	-2.82	1.07	0.67	0.75	1.68	17774	2228	6	0	0	0	0	logfile
✔	7MSX	23971	2023-07-03	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.51	0.0	0.04	14.93	0.00	2.204	4.88	0.25	1.9	98.1	0.0	1.12	1.12	0.78	0.88	3.52	3706	473	1	0	3	0	0	logfile
✔	7W2J	32262	2023-07-08	2021-11-24	3.6	2.90	—	3.6	0.030	1.49	0.0	0.56	15.43	0.01	2.011	18.00	0.00	11.0	88.7	0.4	-2.64	0.65	0.79	1.96	3.6	0.004	1.13	0.0	0.06	16.76	0.00	1.809	12.79	0.65	5.4	94.4	0.2	-0.75	0.37	0.63	0.76	1.48	16522	2104	10	0	10	0	0	logfile
✔	7K7H	22699	2023-07-04	2020-09-22	3.0	3.57	2.98	3.4	0.003	0.54	0.0	0.04	13.31	0.00	2.281	8.54	0.00	8.1	91.9	0.0	-5.02	0.75	0.80	3.30	3.4	0.003	0.75	0.0	0.04	16.54	0.00	2.062	9.42	2.70	6.1	93.9	0.0	-1.66	0.71	0.71	0.84	3.04	6323	816	8	0	0	0	0	logfile
✔	6VMS	21243	2023-07-05	2020-01-28	3.8	3.48	—	3.7	0.013	0.83	0.0	0.04	10.98	0.00	2.082	5.72	0.00	2.3	97.7	0.0	-0.27	0.57	0.71	1.53	3.6	0.004	0.78	0.0	0.05	15.61	0.00	2.104	14.40	0.31	3.8	96.2	0.0	0.31	1.31	0.65	0.83	2.16	8953	1135	5	0	1	0	0	logfile
✔	7RD6	24413	2023-07-04	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.003	0.66	0.0	0.04	16.29	0.00	2.135	14.09	0.12	6.0	94.0	0.0	-1.38	0.42	0.57	0.73	2.17	7396	929	1	0	2	0	0	logfile
✔	7L5W	23191	2023-07-20	2020-12-23	3.34	3.25	—	3.6	0.006	1.01	0.0	0.06	14.60	0.01	2.172	11.17	0.00	6.8	93.2	0.0	-2.74	0.70	0.77	2.23	3.6	0.003	0.63	0.0	0.05	16.48	0.00	2.033	14.35	0.22	6.0	94.0	0.0	-0.34	0.56	0.70	0.78	1.75	51828	6636	12	0	0	0	0	logfile
✔	7ZRV	14922	2023-07-13	2022-05-05	2.8	3.68	3.14	3.4	0.004	0.63	0.0	0.05	13.45	0.00	2.089	9.52	0.00	4.7	95.1	0.2	-0.19	0.79	0.82	2.37	3.4	0.003	0.65	0.0	0.05	15.13	0.00	2.110	11.44	1.51	5.4	94.4	0.1	-0.33	0.43	0.75	0.80	2.16	28055	3429	38	0	88	0	0	logfile
✔	8E5B	27909	2023-07-09	2022-08-20	3.3	3.38	3.29	3.4	0.005	0.58	0.0	0.11	14.62	0.00	2.181	6.78	0.00	4.7	95.3	0.0	-0.27	0.60	0.81	2.63	3.3	0.004	0.65	0.0	0.05	16.23	0.00	2.101	7.39	0.32	5.1	94.9	0.0	-0.24	0.32	0.61	0.85	2.06	20310	2502	10	0	18	0	0	logfile
✔	7PY5	13713	2023-07-14	2021-10-09	3.9	4.34	—	4.2	0.002	0.62	0.0	0.04	14.71	0.00	2.071	8.67	0.00	5.4	94.6	0.0	-1.41	0.80	0.79	1.13	4.2	0.003	0.63	0.0	0.04	16.58	0.00	1.942	11.47	0.21	5.5	94.5	0.0	-0.54	0.47	0.78	0.79	1.14	29959	3832	11	67	3	0	0	logfile
✔	7V9X	31829	2023-07-05	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	21.16	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.003	0.58	0.0	0.04	22.00	0.00	2.233	6.35	0.88	3.3	96.7	0.0	0.70	0.88	0.72	0.85	2.86	10550	760	9	210	0	0	0	logfile
✔	7RHG	24460	2023-07-07	2021-07-17	2.88	2.68	—	2.7	0.003	0.57	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.8	0.003	0.49	0.0	0.04	17.08	0.00	2.130	7.79	0.93	1.5	98.5	0.0	2.09	0.33	0.69	0.89	3.75	14753	1790	8	0	4	0	0	logfile
✔	7A8Z	11680	2023-07-04	2020-08-31	3.35	3.81	3.38	3.7	0.004	0.59	0.0	0.04	14.41	0.00	2.254	7.18	0.00	7.6	92.3	0.1	-1.49	0.68	0.75	3.00	3.8	0.003	0.55	0.0	0.04	15.59	0.00	2.282	6.45	0.24	6.6	93.4	0.1	-0.27	1.50	0.72	0.79	2.62	8402	1103	2	0	0	0	0	logfile

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