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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DJN | 7937 | 2023-12-09 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.011 | 0.95 | 0.0 | 0.06 | 10.67 | 0.01 | 2.106 | 5.53 | 0.00 | 5.4 | 94.6 | 0.0 | -4.61 | 0.69 | 0.86 | 4.00 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 14.27 | 0.00 | 1.969 | 7.93 | 0.08 | 3.5 | 96.5 | 0.0 | -0.16 | 0.64 | 0.70 | 0.88 | 2.61 | 11768 | 1488 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2023-12-07 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.005 | 0.79 | 0.0 | 0.05 | 15.37 | 0.00 | 2.237 | 13.28 | 0.88 | 10.1 | 89.9 | 0.0 | -3.47 | 3.12 | 0.33 | 0.72 | 1.68 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZL4 | 14777 | 2023-12-08 | 2022-04-13 | 3.45 | 3.63 | 3.43 | 3.5 | 0.007 | 1.39 | 0.0 | 0.09 | 16.42 | 0.00 | 2.498 | 3.15 | 0.00 | 1.8 | 98.2 | 0.0 | -4.06 | 0.67 | 0.70 | 0.89 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 15.83 | 0.00 | 2.052 | 12.73 | 0.55 | 3.5 | 96.5 | 0.0 | -2.13 | 1.01 | 0.71 | 0.75 | 1.58 | 6678 | 465 | 4 | 0 | 0 | 0 | 3291 | logfile |
✔ | 6VW2 | 21410 | 2023-12-07 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 2.227 | 13.08 | 0.00 | 15.5 | 84.5 | 0.0 | -4.88 | 0.43 | 0.39 | 0.70 | 1.67 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G1S | 4340 | 2023-12-09 | 2018-03-21 | 3.93 | 4.13 | 3.54 | 4.0 | 0.008 | 0.89 | 0.0 | 0.05 | 13.16 | 0.00 | 2.015 | 12.38 | 0.00 | 12.7 | 87.3 | 0.0 | -4.00 | 0.62 | 0.78 | 1.56 | 4.0 | 0.002 | 0.64 | 0.0 | 0.04 | 16.52 | 0.00 | 2.016 | 24.58 | 0.18 | 9.2 | 90.8 | 0.0 | 0.42 | 1.86 | 0.62 | 0.77 | 1.99 | 9891 | 645 | 4 | 30 | 1 | 0 | 4096 | logfile |
✔ | 8AUR | 15673 | 2023-12-07 | 2022-08-25 | 3.47 | 3.44 | 3.63 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.41 | 0.00 | 2.350 | 6.62 | 0.00 | 5.6 | 94.4 | 0.0 | -1.30 | 0.72 | 0.82 | 2.41 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.233 | 7.09 | 0.00 | 9.4 | 90.5 | 0.1 | -1.38 | 1.66 | 0.71 | 0.83 | 2.56 | 5409 | 699 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iZV | 9758 | 2023-12-07 | 2018-12-20 | 4.2 | 4.27 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 10.55 | 0.01 | 2.170 | 5.77 | 0.00 | 4.9 | 95.1 | 0.0 | -3.60 | 0.68 | 0.81 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 12.56 | 0.00 | 1.962 | 14.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.84 | 1.01 | 0.70 | 0.82 | — | 5624 | 698 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7BX7 | 30235 | 2023-12-07 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.006 | 0.67 | 0.0 | 0.04 | 14.07 | 0.00 | 2.160 | 13.60 | 2.30 | 6.2 | 93.8 | 0.0 | -5.55 | 1.14 | 0.40 | 0.79 | 6.08 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TFS | 25879 | 2023-12-09 | 2022-01-07 | 4.3 | 4.40 | — | 4.4 | 0.004 | 0.96 | 0.0 | 0.04 | 16.80 | 0.01 | 2.001 | 35.40 | 0.00 | 6.0 | 94.0 | 0.0 | -2.06 | 0.63 | 0.70 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.04 | 16.19 | 0.01 | 2.094 | 12.51 | 0.09 | 6.4 | 93.6 | 0.0 | -2.31 | 1.22 | 0.64 | 0.73 | — | 11382 | 1414 | 7 | 0 | 28 | 0 | 0 | logfile |
✔ | 8Cio | 16683 | 2023-12-07 | 2023-02-10 | 3.5 | 3.28 | 3.48 | 3.8 | 0.002 | 0.55 | 0.0 | 0.05 | 11.52 | 0.00 | 2.418 | 8.03 | 0.00 | 8.9 | 91.1 | 0.0 | -1.60 | 0.73 | 0.83 | 2.66 | 3.8 | 0.004 | 0.75 | 0.0 | 0.05 | 13.91 | 0.00 | 2.178 | 9.10 | 0.48 | 11.5 | 87.9 | 0.6 | -1.97 | 0.51 | 0.73 | 0.84 | 2.55 | 5655 | 795 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GKH | 0023 | 2023-12-09 | 2018-05-21 | 4.06 | 4.18 | 3.92 | 4.1 | 0.006 | 1.49 | 0.0 | 0.05 | 12.89 | 0.00 | 1.641 | 13.64 | 0.00 | 10.0 | 90.0 | 0.0 | -4.26 | 0.61 | 0.79 | — | 4.1 | 0.003 | 1.04 | 0.0 | 0.04 | 14.26 | 0.00 | 1.829 | 22.93 | 0.00 | 8.4 | 91.6 | 0.0 | -0.86 | 1.12 | 0.62 | 0.81 | — | 10587 | 685 | 4 | 30 | 4 | 0 | 4399 | logfile |
✔ | 8BFB | 16019 | 2023-12-07 | 2022-10-24 | 3.2 | 3.13 | 3.01 | 3.2 | 0.003 | 0.44 | 0.0 | 0.06 | 13.91 | 0.00 | 2.552 | 9.16 | 0.00 | 0.0 | 100.0 | 0.0 | -3.20 | 0.49 | 0.83 | 5.20 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 17.53 | 0.00 | 2.364 | 6.10 | 0.00 | 2.8 | 97.2 | 0.0 | -3.12 | 1.03 | 0.52 | 0.86 | 7.13 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MST | 9232 | 2023-12-07 | 2018-10-18 | 2.7 | 2.92 | 1.72 | 2.8 | 0.006 | 0.85 | 0.0 | 0.05 | 7.68 | 0.00 | 2.294 | 1.43 | 0.00 | 1.9 | 98.1 | 0.0 | -4.58 | 0.73 | 0.90 | 7.42 | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 15.57 | 0.00 | 2.206 | 6.75 | 0.44 | 2.9 | 97.1 | 0.0 | -3.50 | 1.59 | 0.68 | 0.91 | 7.05 | 5172 | 648 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFE | 20043 | 2023-12-09 | 2019-03-29 | 3.61 | 3.70 | — | 3.6 | 0.006 | 0.63 | 0.0 | 0.04 | 10.07 | 0.01 | 2.325 | 1.57 | 0.00 | 5.3 | 94.7 | 0.0 | -6.24 | 0.64 | 0.85 | 2.72 | 3.6 | 0.003 | 0.56 | 0.0 | 0.03 | 16.25 | 0.00 | 2.166 | 6.08 | 0.46 | 3.9 | 96.1 | 0.0 | 3.89 | 0.61 | 0.65 | 0.86 | 1.19 | 12220 | 1560 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3B | 9350 | 2023-12-07 | 2018-11-14 | 3.8 | 3.75 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.05 | 11.40 | 0.01 | 2.253 | 20.70 | 0.00 | 13.7 | 86.3 | 0.0 | -5.17 | 0.41 | 0.71 | 2.90 | 4.0 | 0.004 | 0.84 | 0.0 | 0.04 | 16.35 | 0.01 | 2.292 | 25.40 | 1.13 | 9.6 | 90.4 | 0.0 | -5.16 | 1.50 | 0.42 | 0.70 | 1.16 | 2735 | 385 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-12-10 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.4 | 0.006 | 1.28 | 0.0 | 0.06 | 15.37 | 0.01 | 1.912 | 43.78 | 0.00 | 8.2 | 91.8 | 0.0 | -2.70 | 3.88 | 0.27 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WQK | 21871 | 2023-12-07 | 2020-04-29 | 3.1 | 3.26 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.47 | 0.00 | 2.272 | 4.54 | 0.00 | 1.8 | 98.2 | 0.0 | -5.40 | 0.48 | 0.84 | 4.99 | 3.3 | 0.006 | 0.77 | 0.0 | 0.05 | 13.71 | 0.00 | 2.228 | 7.21 | 0.00 | 5.1 | 94.9 | 0.0 | -4.42 | 0.47 | 0.46 | 0.85 | 5.27 | 2070 | 285 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oVT | 13089 | 2023-12-08 | 2021-06-15 | 2.69 | 2.94 | 2.42 | 2.8 | 0.017 | 1.67 | 0.0 | 0.10 | 13.71 | 0.01 | 2.550 | 2.09 | 0.00 | 3.0 | 97.0 | 0.0 | -3.46 | 0.53 | 0.82 | 6.84 | 2.8 | 0.004 | 0.63 | 0.0 | 0.04 | 17.50 | 0.00 | 2.299 | 6.92 | 2.43 | 6.7 | 93.3 | 0.0 | -3.86 | 0.55 | 0.57 | 0.86 | 6.08 | 6588 | 828 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AHN | 11787 | 2023-12-10 | 2020-09-24 | 2.9 | 3.17 | 3.02 | 3.1 | 0.058 | 2.59 | 0.0 | 0.23 | 19.71 | 0.03 | 1.580 | 5.20 | 0.00 | 2.4 | 97.6 | 0.0 | -2.47 | 0.75 | 0.84 | 3.55 | 3.1 | 0.003 | 1.05 | 0.0 | 0.05 | 19.57 | 0.00 | 1.916 | 12.69 | 1.29 | 1.7 | 98.3 | 0.0 | 0.39 | 2.44 | 0.70 | 0.84 | 2.63 | 14940 | 1835 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 6G19 | 4338 | 2023-12-09 | 2018-03-20 | 3.68 | 3.74 | 3.61 | 3.7 | 0.013 | 1.15 | 0.0 | 0.06 | 14.15 | 0.01 | 2.086 | 11.49 | 0.00 | 10.2 | 89.5 | 0.3 | -4.18 | 0.57 | 0.77 | 2.62 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 16.76 | 0.00 | 2.048 | 18.73 | 0.16 | 10.2 | 89.8 | 0.0 | -0.34 | 0.94 | 0.59 | 0.79 | 2.07 | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |