Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W9F	32366	2023-11-13	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.63	0.0	0.04	16.02	0.00	2.165	10.00	0.55	4.0	96.0	0.0	-1.02	0.53	0.74	0.73	1.84	4856	625	3	0	0	0	0	logfile
✔	8DBZ	27318	2023-11-14	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.004	0.79	0.0	0.05	13.06	0.01	2.080	21.68	0.00	8.3	91.6	0.1	-1.72	0.63	0.64	0.65	—	7960	1184	9	0	0	0	0	logfile
✔	8D65	27217	2023-11-15	2022-06-06	3.47	3.58	3.37	3.5	0.010	1.03	0.0	0.07	15.70	0.01	1.871	9.16	0.00	4.9	95.1	0.0	-3.22	0.69	0.83	3.43	3.6	0.003	0.52	0.0	0.04	14.74	0.00	2.279	3.72	0.07	3.2	96.8	0.0	0.33	0.49	0.71	0.86	3.32	12780	1535	10	0	5	0	0	logfile
✔	7F4i	31453	2023-11-14	2021-06-18	3.1	3.87	—	3.5	0.009	1.21	0.0	0.06	11.96	0.01	2.169	1.75	0.00	4.3	95.7	0.0	-0.38	0.67	0.82	3.32	3.5	0.004	0.71	0.0	0.04	14.94	0.00	2.222	10.12	0.47	2.2	97.8	0.0	1.37	2.50	0.66	0.83	2.24	8031	1030	7	0	1	0	0	logfile
✔	7oNi	12995	2023-11-14	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.85	0.00	2.221	7.18	0.45	4.5	95.5	0.0	1.20	0.39	0.88	0.87	2.13	8840	1141	6	0	7	0	0	logfile
✘	6R93	4767	2023-11-18	2019-04-02	4.0	4.29	—	4.1	0.010	1.48	2.0	0.10	29.24	0.01	1.600	2.04	0.00	2.5	97.0	0.5	0.30	0.78	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22961	775	10	290	0	0	10123	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	7F16	31405	2023-11-14	2021-06-08	2.8	3.48	—	3.3	0.004	0.84	0.0	0.06	8.59	0.01	2.240	4.43	0.00	1.7	98.3	0.0	0.51	0.66	0.75	1.95	3.3	0.004	0.68	0.0	0.04	15.09	0.00	2.130	12.86	2.73	2.9	97.1	0.0	1.06	0.96	0.64	0.76	2.24	9488	1163	7	0	10	0	0	logfile
✔	7QLA	14066	2023-11-14	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.76	0.0	0.04	15.73	0.00	2.136	14.14	0.41	5.3	94.7	0.0	-0.81	0.52	0.73	0.76	1.64	6837	874	2	0	0	0	0	logfile
✔	6KFH	9973	2023-11-17	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.71	0.0	0.04	17.60	0.00	2.197	9.34	0.41	8.2	91.8	0.0	0.16	0.63	0.61	0.81	0.91	20840	2544	8	0	0	0	0	logfile
✔	7PBW	13307	2023-11-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7UAG	26425	2023-11-14	2022-03-12	3.5	3.78	3.45	3.9	0.004	0.66	0.0	0.05	13.11	0.01	2.247	17.66	0.00	6.5	93.4	0.1	-1.43	0.65	0.67	1.75	3.8	0.005	0.70	0.0	0.05	15.39	0.01	2.060	17.86	0.37	6.8	93.2	0.0	-1.47	0.40	0.67	0.68	1.33	7588	938	2	0	0	0	0	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	7UPN	26673	2023-11-14	2022-04-16	3.5	4.29	3.52	4.0	0.002	0.53	0.0	0.04	14.66	0.00	2.284	6.79	0.00	7.4	92.3	0.4	-1.27	0.86	0.78	1.41	4.0	0.004	0.69	0.0	0.04	16.73	0.01	2.198	10.84	0.11	8.8	90.5	0.7	-1.95	1.26	0.87	0.82	1.83	8872	1100	10	0	2	0	0	logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	8D66	27218	2023-11-15	2022-06-06	3.14	3.25	3.04	3.2	0.009	1.02	0.0	0.06	16.96	0.01	2.309	7.77	0.00	6.2	93.8	0.0	-1.63	0.69	0.83	3.44	3.2	0.004	0.57	0.0	0.05	15.52	0.00	2.214	7.58	0.36	5.2	94.8	0.0	0.02	0.37	0.66	0.83	3.50	12800	1540	10	0	5	0	0	logfile
✔	6TNF	10531	2023-11-14	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	18.93	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.006	1.19	0.0	0.10	15.66	0.01	2.088	17.70	0.00	21.3	78.6	0.1	-4.12	0.55	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7XJL	33231	2023-11-14	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.003	0.71	0.0	0.04	15.86	0.00	2.122	16.26	0.58	3.0	97.0	0.0	0.94	0.47	0.62	0.77	1.62	8527	1137	6	0	0	0	0	logfile
✘	6RW6	10033	2023-11-22	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.16	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98645	12425	5	0	0	0	0	logfile
✔	7WSi	32759	2023-11-13	2022-01-29	3.32	3.90	—	3.8	0.003	0.67	0.0	0.04	12.25	0.00	2.122	8.82	0.00	7.9	92.1	0.0	-0.23	0.66	0.77	1.76	3.8	0.003	0.82	0.0	0.05	15.61	0.00	2.155	11.27	0.15	8.5	91.5	0.0	-0.17	1.48	0.58	0.79	1.72	5701	743	3	0	0	0	0	logfile

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