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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XD5 | 33136 | 2024-03-11 | 2022-03-26 | 2.84 | 3.32 | 2.81 | 3.1 | 0.003 | 0.58 | 0.0 | 0.03 | 23.20 | 0.00 | 1.864 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.86 | — | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 23.41 | 0.00 | 1.948 | 6.18 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.38 | 0.89 | 0.90 | — | 8714 | 0 | 3 | 406 | 30 | 0 | 0 | logfile |
✔ | 6UW8 | 20919 | 2024-03-18 | 2019-11-04 | 4.02 | 4.12 | — | 4.0 | 0.005 | 0.90 | 4.0 | 0.05 | 14.81 | 0.01 | 2.173 | 4.55 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.69 | 0.83 | — | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 14.17 | 0.00 | 2.120 | 7.65 | 0.00 | 6.1 | 93.9 | 0.0 | 0.07 | 1.97 | 0.69 | 0.82 | — | 19640 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E9F | 9014 | 2024-03-11 | 2018-08-01 | 3.3 | 3.57 | 3.33 | 3.5 | 0.011 | 1.13 | 0.0 | 0.07 | 16.25 | 0.01 | 1.872 | 10.69 | 0.00 | 8.1 | 91.9 | 0.0 | -5.59 | 0.66 | 0.81 | 3.51 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 18.48 | 0.00 | 2.027 | 13.40 | 3.61 | 4.5 | 95.5 | 0.0 | -1.19 | 1.14 | 0.67 | 0.84 | 2.32 | 8745 | 864 | 4 | 79 | 1 | 0 | 0 | logfile |
✔ | 7Q4C | 13801 | 2024-03-14 | 2021-10-30 | 4.08 | 4.49 | 4.12 | 4.4 | 0.007 | 0.92 | 0.0 | 0.05 | 14.78 | 0.01 | 2.077 | 6.86 | 0.00 | 3.3 | 96.7 | 0.0 | -1.44 | 0.71 | 0.75 | — | 4.4 | 0.003 | 0.61 | 0.0 | 0.04 | 14.37 | 0.00 | 2.009 | 8.21 | 0.00 | 2.6 | 97.4 | 0.0 | 1.75 | 0.89 | 0.69 | 0.74 | — | 9503 | 585 | 5 | 0 | 11 | 0 | 4598 | logfile |
✔ | 7TJU | 25932 | 2024-03-19 | 2022-01-17 | 3.3 | 3.57 | 3.40 | 3.5 | 0.002 | 0.59 | 0.0 | 0.05 | 12.53 | 0.00 | 2.070 | 2.00 | 0.00 | 1.4 | 98.6 | 0.0 | 0.36 | 0.77 | 0.84 | 3.19 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 14.71 | 0.00 | 1.960 | 5.86 | 1.74 | 1.9 | 98.1 | 0.0 | 0.70 | 0.51 | 0.79 | 0.87 | 2.67 | 22687 | 3102 | 11 | 0 | 7 | 0 | 0 | logfile |
✔ | 8DN8 | 27556 | 2024-03-15 | 2022-07-10 | 3.7 | 4.03 | 3.79 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.76 | 0.00 | 2.157 | 9.82 | 0.00 | 6.0 | 94.0 | 0.0 | -0.14 | 0.72 | 0.82 | 1.16 | 3.9 | 0.005 | 0.68 | 0.0 | 0.04 | 16.01 | 0.00 | 2.147 | 13.31 | 3.10 | 6.7 | 93.3 | 0.0 | -0.18 | 0.58 | 0.72 | 0.83 | 1.08 | 10638 | 1300 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6VAM | 21143 | 2024-03-16 | 2019-12-17 | 3.63 | 4.11 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.04 | 14.63 | 0.00 | 2.290 | 9.78 | 0.00 | 7.3 | 92.7 | 0.0 | -1.89 | 0.65 | 0.76 | 2.23 | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 16.31 | 0.00 | 2.368 | 6.99 | 0.49 | 5.1 | 94.9 | 0.0 | 2.15 | 0.48 | 0.65 | 0.79 | 2.29 | 13360 | 1712 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2024-03-17 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 10.41 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7UML | 26603 | 2024-03-16 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 16.39 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 17.86 | 0.01 | 2.016 | 9.38 | 1.73 | 9.4 | 90.2 | 0.4 | -1.39 | 0.80 | 0.65 | 0.72 | 2.39 | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |
✔ | 7WVX | 32861 | 2024-03-11 | 2022-02-11 | 2.8 | 2.96 | — | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 12.15 | 0.00 | 2.251 | 8.52 | 0.00 | 2.1 | 97.9 | 0.0 | 0.86 | 0.60 | 0.76 | 2.80 | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 15.66 | 0.00 | 2.140 | 12.99 | 2.28 | 3.4 | 96.6 | 0.0 | 0.19 | 1.18 | 0.64 | 0.83 | 2.99 | 7070 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVV | 32859 | 2024-03-11 | 2022-02-11 | 2.9 | 3.01 | — | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 12.21 | 0.00 | 2.286 | 7.42 | 0.00 | 2.2 | 97.8 | 0.0 | 0.74 | 0.59 | 0.74 | 2.55 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 15.14 | 0.00 | 2.135 | 10.13 | 2.70 | 2.8 | 97.2 | 0.0 | 0.44 | 0.43 | 0.61 | 0.79 | 2.65 | 7020 | 911 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RQU | 24636 | 2024-03-23 | 2021-08-08 | 3.05 | 3.32 | — | 3.3 | 0.012 | 1.15 | 0.0 | 0.06 | 22.09 | 0.00 | 2.334 | 3.79 | 0.00 | 3.2 | 96.8 | 0.0 | 1.69 | 0.63 | 0.76 | 2.73 | 3.3 | 0.003 | 0.46 | 0.0 | 0.03 | 15.88 | 0.00 | 2.362 | 3.22 | 1.38 | 3.7 | 96.3 | 0.0 | 1.91 | 0.28 | 0.64 | 0.80 | 2.64 | 35602 | 2416 | 8 | 0 | 38 | 0 | 16568 | logfile |
✔ | 7SSS | 25413 | 2024-03-17 | 2021-11-11 | 2.4 | 2.00 | 2.36 | 2.4 | 0.006 | 0.66 | 0.0 | 0.04 | 17.64 | 0.02 | 2.323 | 3.55 | 0.00 | 2.4 | 97.6 | 0.0 | 0.01 | 0.59 | 0.78 | 4.08 | 2.3 | 0.002 | 0.50 | 0.0 | 0.03 | 18.18 | 0.00 | 2.163 | 7.69 | 1.72 | 2.6 | 97.4 | 0.0 | 2.83 | 0.51 | 0.62 | 0.81 | 3.03 | 12190 | 1416 | 24 | 0 | 38 | 170 | 0 | logfile |
✔ | 7RQW | 24638 | 2024-03-22 | 2021-08-08 | 3.11 | 3.40 | — | 3.5 | 0.011 | 0.99 | 0.0 | 0.06 | 17.95 | 0.00 | 2.042 | 7.24 | 0.00 | 4.4 | 95.6 | 0.0 | 0.31 | 0.55 | 0.69 | 2.95 | 3.5 | 0.003 | 0.46 | 0.0 | 0.03 | 16.96 | 0.00 | 1.949 | 7.74 | 1.50 | 3.6 | 96.4 | 0.0 | 1.03 | 0.37 | 0.51 | 0.68 | 2.77 | 32984 | 2128 | 8 | 0 | 20 | 0 | 15804 | logfile |
✔ | 6DT0 | 8911 | 2024-03-16 | 2018-06-14 | 3.7 | 3.89 | 3.68 | 3.8 | 0.005 | 0.72 | 0.0 | 0.04 | 8.50 | 0.01 | 2.087 | 1.74 | 0.00 | 3.1 | 96.9 | 0.0 | -1.45 | 0.69 | 0.77 | 1.54 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 13.79 | 0.00 | 1.930 | 5.52 | 2.41 | 4.3 | 95.7 | 0.0 | 3.35 | 1.08 | 0.70 | 0.80 | 2.71 | 13759 | 944 | 5 | 0 | 1 | 0 | 6626 | logfile |
✔ | 7TAo | 25779 | 2024-03-18 | 2021-12-21 | 3.2 | 3.44 | — | 3.5 | 0.011 | 2.56 | 0.0 | 0.25 | 18.06 | 0.00 | 2.109 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 1.97 | 0.67 | 0.81 | 2.29 | 3.5 | 0.003 | 0.98 | 0.0 | 0.04 | 18.41 | 0.00 | 2.109 | 9.61 | 1.67 | 2.2 | 97.8 | 0.0 | 0.52 | 1.25 | 0.65 | 0.82 | 2.05 | 22497 | 2915 | 23 | 0 | 9 | 0 | 0 | logfile |
✔ | 6MHo | 9115 | 2024-03-22 | 2018-09-18 | 3.4 | 3.50 | 3.41 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 7.36 | 0.00 | 2.108 | 2.84 | 0.00 | 2.7 | 97.3 | 0.0 | -2.41 | 0.66 | 0.76 | 3.45 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 12.95 | 0.00 | 1.965 | 6.32 | 2.21 | 4.4 | 95.6 | 0.0 | 1.05 | 2.46 | 0.69 | 0.81 | 3.71 | 32224 | 2404 | 4 | 0 | 0 | 0 | 15184 | logfile |
✔ | 7SK2 | 25170 | 2024-03-10 | 2021-10-19 | 3.82 | 4.03 | — | 3.9 | 0.007 | 1.22 | 0.0 | 0.06 | 13.67 | 0.01 | 2.235 | 8.03 | 0.00 | 4.7 | 95.3 | 0.0 | -2.59 | 0.49 | 0.69 | 1.11 | 3.9 | 0.003 | 0.83 | 0.0 | 0.04 | 16.19 | 0.00 | 2.147 | 19.11 | 4.23 | 4.5 | 95.5 | 0.0 | -0.35 | 0.52 | 0.50 | 0.70 | 1.15 | 4177 | 532 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2024-03-16 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 12.68 | 0.00 | 1.959 | 12.92 | 2.23 | 3.6 | 96.4 | 0.0 | 1.69 | 1.46 | 0.75 | 0.85 | 1.85 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 8F7S | 28909 | 2024-03-14 | 2022-11-20 | 3.0 | 2.55 | 2.85 | 3.0 | 0.005 | 0.87 | 0.0 | 0.06 | 8.47 | 0.01 | 2.290 | 3.53 | 0.00 | 1.6 | 98.4 | 0.0 | 1.29 | 0.56 | 0.77 | 3.32 | 2.8 | 0.003 | 0.60 | 0.0 | 0.04 | 14.27 | 0.00 | 2.097 | 5.35 | 2.18 | 2.1 | 97.9 | 0.0 | 1.92 | 1.37 | 0.59 | 0.84 | 3.07 | 9975 | 1225 | 10 | 0 | 21 | 0 | 0 | logfile |