Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D20	30552	2021-10-04	2020-09-15	3.0	3.72	—	3.6	0.009	0.81	0.0	0.06	28.76	0.00	1.752	12.62	0.00	5.2	94.8	0.0	-3.29	0.78	0.78	2.68	3.6	0.003	0.69	0.0	0.05	28.39	0.00	2.142	10.19	1.59	2.7	97.3	0.0	1.53	0.58	0.78	0.79	2.73	12836	914	11	272	0	0	0	logfile
✔	6Z80	11113	2021-10-07	2020-06-02	3.0	3.21	—	3.2	0.016	1.22	0.0	0.07	9.98	0.01	2.030	3.48	0.00	3.4	96.2	0.4	-3.67	0.70	0.73	3.14	3.2	0.003	0.64	0.0	0.05	16.19	0.00	2.117	6.92	3.03	4.2	95.8	0.0	-0.01	2.53	0.64	0.75	1.99	21460	2660	40	0	20	0	0	logfile
✔	6M0R	30034	2021-10-07	2020-02-22	2.7	2.84	—	2.9	0.016	1.80	0.0	0.05	18.21	0.02	2.036	1.27	0.00	1.4	98.6	0.0	-4.42	0.68	0.72	1.37	2.8	0.003	0.57	0.0	0.04	16.57	0.00	1.893	5.08	1.49	1.7	98.3	0.0	-0.30	2.04	0.75	0.83	2.97	46354	2915	43	0	37	184	22687	logfile
✔	6oJQ	20092	2021-10-05	2019-04-12	3.67	3.91	—	3.8	0.008	0.78	0.0	0.04	10.32	0.00	2.000	3.54	0.00	4.0	96.0	0.0	-3.02	0.57	0.74	2.96	3.8	0.003	0.53	0.0	0.04	12.96	0.00	1.918	8.19	0.10	3.5	96.5	0.0	-0.53	2.74	0.66	0.82	3.08	18055	1164	5	0	4	0	8878	logfile
✔	6ZiQ	11228	2021-10-05	2020-06-26	4.33	3.58	4.02	3.4	0.005	0.73	0.0	0.08	14.67	0.00	1.911	18.83	0.00	8.6	91.4	0.0	-1.50	0.48	0.72	—	3.4	0.003	0.61	0.0	0.08	14.68	0.00	1.960	12.06	0.08	4.5	95.5	0.0	1.03	0.61	0.47	0.71	—	22255	1385	15	0	0	0	11316	logfile
✔	6XS6	22301	2021-10-04	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.012	1.21	2.0	0.04	15.91	0.01	2.160	9.06	0.15	5.3	94.7	0.0	-0.90	0.65	0.57	0.59	2.18	18294	2357	3	0	0	0	0	logfile
✘	7JNA	22403	2021-10-03	2020-08-04	3.6	3.74	—	3.8	0.004	0.69	0.0	0.04	13.30	0.03	2.215	11.61	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6432	834	9	0	15	0	0	logfile
✔	6M0S	30035	2021-10-07	2020-02-22	3.6	3.77	—	3.7	0.004	0.65	0.0	0.04	8.18	0.00	2.205	1.30	0.00	1.9	98.1	0.0	-4.94	0.71	0.74	1.42	3.7	0.003	0.57	0.0	0.04	14.54	0.00	2.071	5.22	0.21	3.0	97.0	0.0	-0.21	1.35	0.77	0.81	1.37	44660	2909	15	0	0	0	22618	logfile
✔	6ZG7	11195	2021-10-04	2020-06-18	3.49	3.18	3.39	3.4	0.006	0.64	0.0	0.04	14.31	0.00	2.002	9.98	0.00	4.7	95.3	0.0	-0.05	0.54	0.78	2.53	3.4	0.004	0.56	0.0	0.04	15.82	0.00	1.988	7.82	0.26	3.7	96.3	0.0	1.18	0.48	0.55	0.79	2.12	15587	1048	11	0	0	0	7852	logfile
✔	7C8K	30306	2021-10-03	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.004	0.63	0.0	0.04	15.58	0.00	2.216	9.44	0.40	4.5	95.5	0.0	1.25	1.13	0.85	0.83	2.99	4853	596	3	0	6	0	0	logfile
✔	6WFU	21657	2021-10-19	2020-04-04	3.03	3.40	—	3.3	0.009	0.89	0.0	0.05	8.71	0.01	2.191	11.37	0.00	2.7	97.3	0.0	-1.73	0.77	0.88	5.59	3.3	0.004	0.67	0.0	0.04	13.23	0.00	2.130	6.61	0.18	4.0	96.0	0.0	-0.87	3.71	0.71	0.87	4.90	245100	30780	60	0	0	0	0	logfile
✔	6YY0	11001	2021-10-03	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.05	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.006	0.74	1.0	0.04	16.15	0.00	1.815	6.35	0.12	4.3	95.7	0.0	0.24	0.34	0.73	0.85	2.67	61162	3926	25	0	11	17	30826	logfile
✔	6VN1	21247	2021-10-06	2020-01-29	2.8	2.97	2.75	3.0	0.006	0.63	0.0	0.05	13.28	0.00	2.123	7.52	0.00	6.3	93.7	0.0	-3.36	0.70	0.80	3.79	3.0	0.004	0.66	0.0	0.05	16.03	0.00	2.170	7.03	2.59	6.3	93.7	0.0	-1.16	0.45	0.74	0.83	3.44	19524	2454	9	0	0	0	0	logfile
✘	7AHN	11787	2021-10-04	2020-09-24	2.9	3.17	3.02	3.1	0.011	0.98	0.0	0.06	15.93	0.01	1.206	5.17	0.00	2.4	97.6	0.0	-2.47	0.75	0.84	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14940	1835	10	0	20	0	0	logfile
✔	6Z1R	11039	2021-10-04	2020-05-14	3.29	3.42	3.09	3.3	0.007	0.71	0.0	0.04	15.06	0.00	1.890	9.02	0.00	6.6	93.4	0.0	-1.25	0.69	0.83	2.88	3.3	0.004	0.56	0.0	0.04	16.00	0.00	1.757	7.52	0.09	4.9	95.1	0.0	0.13	1.54	0.70	0.85	2.44	65754	4278	32	0	11	17	33137	logfile
✔	6VL6	21231	2021-10-05	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.28	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	4.6	0.004	0.66	0.0	0.04	13.00	0.00	2.211	18.43	0.00	2.2	97.8	0.0	1.57	2.01	0.81	0.75	—	21504	2640	24	0	0	0	0	logfile
✔	6ZiK	11227	2021-10-03	2020-06-26	3.66	3.14	3.54	3.4	0.005	0.71	0.0	0.04	14.22	0.00	2.134	9.91	0.00	2.0	98.0	0.0	1.08	0.55	0.78	2.12	3.4	0.003	0.61	0.0	0.04	16.50	0.01	2.191	8.71	0.65	2.0	98.0	0.0	2.04	0.46	0.55	0.78	1.61	7735	1048	11	0	0	0	0	logfile
✔	6VFK	21185	2021-10-06	2020-01-05	4.25	4.39	4.20	4.3	0.021	1.41	0.0	0.09	10.30	0.01	2.389	0.32	0.00	1.3	98.7	0.0	2.59	0.84	0.81	—	4.2	0.003	0.56	0.0	0.04	13.15	0.00	2.189	9.10	0.03	1.6	98.2	0.2	4.36	1.08	0.84	0.83	—	37032	4764	24	0	0	0	0	logfile
✔	6Y5B	10693	2021-10-06	2020-02-25	3.1	4.45	2.96	3.0	0.006	0.87	0.0	0.05	13.31	0.01	2.010	5.15	0.00	1.9	98.1	0.0	-3.11	0.93	0.85	2.13	3.0	0.003	0.54	0.0	0.04	14.20	0.00	2.084	7.54	0.11	2.3	97.7	0.0	0.53	1.13	0.94	0.87	2.43	31429	1887	5	0	0	0	15794	logfile
✔	6Y59	10691	2021-10-06	2020-02-25	3.2	4.61	3.12	3.4	0.008	0.94	0.0	0.05	12.32	0.01	2.376	3.45	0.00	1.2	98.8	0.0	-3.39	0.92	0.84	2.09	3.4	0.003	0.52	0.0	0.04	13.42	0.00	2.148	9.50	0.11	2.9	97.1	0.0	0.60	1.21	0.93	0.87	2.23	31910	1915	5	0	0	0	16045	logfile

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