Table showing results for April 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DDD	30651	2022-04-07	2020-10-28	3.0	3.36	—	3.3	0.003	0.71	0.0	0.05	8.16	0.01	2.248	5.92	0.00	3.6	96.4	0.1	-3.86	0.67	0.64	1.47	3.3	0.010	1.07	2.0	0.05	15.74	0.01	2.138	15.40	3.59	3.7	96.3	0.0	-1.29	1.80	0.73	0.78	2.75	25503	3264	3	0	0	0	0	logfile
✘	6PLV	20377	2022-04-05	2019-07-01	3.3	3.42	—	3.4	0.010	1.05	0.0	0.06	9.18	0.01	1.521	4.23	0.00	5.6	94.4	0.0	-5.00	0.68	0.84	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14655	1725	15	0	75	0	0	logfile
✔	7K0L	22601	2022-04-04	2020-09-04	3.4	3.83	—	3.7	0.004	0.69	0.0	0.04	12.60	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.52	0.0	0.04	13.90	0.00	2.200	5.46	0.25	2.1	97.9	0.0	0.87	1.05	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile
✘	6PLT	20375	2022-04-05	2019-07-01	3.2	3.64	—	3.5	0.009	1.00	0.0	0.06	9.13	0.01	1.522	4.03	0.00	5.6	94.4	0.0	-4.61	0.67	0.83	4.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14445	1725	15	0	60	0	0	logfile
✔	7JSE	22451	2022-04-05	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.005	0.96	0.0	0.08	14.35	0.00	2.201	6.17	0.00	15.6	84.4	0.0	-2.03	2.71	0.83	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	7A7C	11677	2022-04-04	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.005	0.55	0.0	0.04	14.63	0.00	2.108	6.73	0.11	5.1	94.9	0.0	-0.29	0.24	0.83	0.89	3.27	9387	1226	2	0	1	0	0	logfile
✔	7BoJ	30130	2022-04-06	2020-03-19	2.5	2.54	2.38	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.34	0.00	2.4	97.6	0.0	-2.48	0.76	0.86	4.26	2.5	0.003	0.61	0.0	0.04	15.84	0.00	2.176	7.06	2.44	2.2	97.8	0.0	1.33	0.47	0.78	0.88	4.07	123525	16165	61	0	0	0	0	logfile
✔	7K0P	22606	2022-04-06	2020-09-04	3.1	3.68	—	3.6	0.005	0.71	0.0	0.04	13.66	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.008	0.62	0.0	0.04	14.95	0.00	2.065	4.97	0.16	2.2	97.8	0.0	1.28	0.29	0.70	0.84	2.70	18572	2342	14	0	15	0	0	logfile
✔	7K0M	22602	2022-04-06	2020-09-04	2.9	3.38	—	3.3	0.005	0.69	0.0	0.04	12.85	0.00	2.218	4.70	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.003	0.49	0.0	0.04	15.09	0.00	2.231	5.00	1.09	2.4	97.6	0.0	1.32	0.38	0.63	0.80	3.14	18578	2342	14	0	16	0	0	logfile
✔	7KNB	22941	2022-04-07	2020-11-04	3.93	4.91	4.02	3.9	0.002	0.51	0.0	0.04	13.56	0.00	2.207	4.35	0.00	3.6	96.4	0.0	-0.61	0.87	0.76	0.69	3.9	0.003	0.57	0.0	0.04	14.80	0.00	2.106	12.99	0.06	4.2	95.8	0.0	-0.37	1.18	0.90	0.84	0.93	29224	3637	13	0	56	0	0	logfile
✔	7K0Q	22608	2022-04-04	2020-09-04	3.3	3.61	—	3.5	0.007	0.77	0.0	0.05	12.67	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.50	0.0	0.04	14.30	0.00	2.194	4.96	0.21	2.5	97.5	0.0	1.17	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	7K5i	22681	2022-04-07	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.78	0.01	2.031	6.51	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.008	0.86	0.0	0.05	17.16	0.01	2.039	7.26	2.64	4.7	95.2	0.0	-0.76	0.26	0.79	0.84	3.15	74540	4881	40	1665	4	0	0	logfile
✔	7C99	30309	2022-04-04	2020-06-05	3.36	3.44	—	3.5	0.008	1.05	0.0	0.05	16.20	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.5	0.003	0.57	0.0	0.04	18.82	0.00	2.094	6.18	0.40	5.7	94.3	0.0	-2.32	2.17	0.51	0.87	2.57	7656	927	8	18	6	0	0	logfile
✔	7LBY	23267	2022-04-05	2021-01-09	4.2	4.35	—	4.3	0.003	0.78	0.0	0.05	12.33	0.00	2.148	4.15	0.00	6.2	92.5	1.3	-0.24	0.56	0.69	—	4.3	0.006	0.74	0.0	0.05	12.03	0.01	1.980	9.73	0.00	9.4	90.3	0.4	-0.03	0.62	0.58	0.72	—	8800	1418	2	0	0	0	0	logfile
✘	7K0K	22600	2022-04-04	2020-09-04	2.6	2.96	—	2.9	0.006	0.71	0.0	0.05	12.70	0.00	1.915	7.43	0.00	2.2	97.8	0.0	0.53	0.68	0.85	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7615	964	4	0	2	0	0	logfile
✔	7A7A	11676	2022-04-05	2020-08-27	3.08	3.57	3.16	3.5	0.009	0.75	0.0	0.05	13.72	0.01	2.167	9.08	0.00	9.0	91.0	0.0	-2.02	0.82	0.87	3.53	3.4	0.004	0.61	0.0	0.04	14.99	0.01	2.216	7.31	0.10	4.7	95.3	0.0	-0.56	0.77	0.81	0.88	2.70	10147	1324	4	0	2	0	0	logfile
✘	7E0K	30935	2022-04-04	2021-01-28	3.09	2.58	—	3.1	0.010	1.45	0.0	0.05	18.57	0.02	1.210	8.40	0.00	7.2	92.8	0.0	-3.05	0.62	0.82	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8044	677	6	0	58	0	0	logfile
✔	7CM5	30401	2022-04-08	2020-07-24	2.6	2.44	—	2.7	0.003	0.77	0.0	0.04	8.24	0.01	2.309	3.65	0.00	3.8	96.2	0.0	-3.70	0.75	0.77	1.89	2.6	0.004	0.70	0.0	0.04	15.50	0.01	2.156	7.47	1.72	3.3	96.7	0.0	1.41	1.39	0.78	0.85	2.12	38304	4888	8	0	0	0	0	logfile
✔	7KFZ	22857	2022-04-04	2020-10-15	3.47	4.45	3.43	3.9	0.012	0.80	0.0	0.05	13.42	0.00	1.897	8.91	0.00	3.8	96.2	0.0	-1.10	0.86	0.78	2.74	3.9	0.005	0.61	0.0	0.04	14.18	0.00	1.888	8.30	0.14	2.4	97.6	0.0	2.27	0.51	0.93	0.88	2.86	6592	803	3	0	2	0	0	logfile
✔	7KFU	22856	2022-04-06	2020-10-14	3.9	3.92	—	3.8	0.006	0.83	0.0	0.05	14.44	0.01	1.548	6.32	0.00	4.9	95.1	0.0	-1.04	0.73	0.72	1.56	3.8	0.009	0.92	1.0	0.04	16.78	0.00	1.665	13.98	0.17	5.1	94.9	0.0	0.30	2.54	0.76	0.75	1.53	21848	2674	6	0	0	0	0	logfile

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