Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MPG	23933	2023-02-23	2021-05-04	3.4	3.98	—	4.0	0.003	0.71	0.0	0.06	13.49	0.00	1.908	15.24	0.00	6.1	93.7	0.2	-1.25	0.57	0.67	1.15	3.9	0.004	0.76	0.0	0.05	16.43	0.01	2.104	15.81	0.43	5.4	94.4	0.2	-0.90	0.89	0.59	0.81	1.27	20366	2640	12	0	3	0	0	logfile
✔	7SMP	25204	2023-02-25	2021-10-26	3.28	3.55	3.42	3.5	0.004	0.76	3.0	0.04	14.91	0.01	1.944	6.91	0.00	4.9	95.1	0.0	0.04	0.57	0.74	2.64	3.5	0.003	0.55	3.0	0.04	15.42	0.00	1.913	10.12	0.07	5.1	94.9	0.0	0.29	0.38	0.58	0.77	2.24	26477	1668	4	0	5	0	13353	logfile
✔	7ZTC	14957	2023-02-25	2022-05-09	3.9	3.69	3.89	3.8	0.004	0.84	0.0	0.05	13.85	0.01	2.123	5.33	0.00	6.9	93.1	0.0	-2.20	0.71	0.82	3.21	3.7	0.003	0.69	0.0	0.04	15.14	0.00	2.177	7.01	0.20	4.1	95.9	0.0	-0.59	2.51	0.72	0.84	2.24	25652	2920	20	0	548	0	0	logfile
✔	7VAU	31864	2023-02-27	2021-08-30	3.3	2.83	3.35	3.2	0.007	0.69	0.0	0.05	13.63	0.00	1.966	5.17	0.00	2.6	97.4	0.0	0.84	0.60	0.81	2.86	3.1	0.004	0.59	0.0	0.04	16.36	0.00	1.965	6.66	0.52	2.8	97.2	0.0	0.21	1.12	0.63	0.85	2.44	29513	3787	14	0	4	0	0	logfile
✔	6VRH	21368	2023-02-17	2020-02-07	3.3	3.68	3.56	3.6	0.003	0.54	0.0	0.04	12.92	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.57	0.0	0.04	14.97	0.00	2.144	9.26	0.15	5.7	94.3	0.0	-0.69	0.59	0.50	0.74	1.56	6142	764	4	0	5	0	0	logfile
✔	7WiJ	32531	2023-02-20	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7K0Q	22608	2023-02-18	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	7ZTD	14958	2023-02-25	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.003	0.68	0.0	0.04	13.92	0.00	2.049	9.84	0.00	4.9	95.1	0.0	0.37	10.50	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	7VAY	31871	2023-02-27	2021-08-30	3.3	2.93	3.28	3.2	0.005	0.59	0.0	0.04	13.52	0.00	1.949	6.21	0.00	2.6	97.4	0.0	1.07	0.63	0.77	3.23	3.1	0.006	0.65	0.0	0.05	16.18	0.01	1.933	8.94	0.32	2.9	97.1	0.0	0.22	1.06	0.72	0.86	3.30	29553	3788	16	0	5	0	0	logfile
✔	7K0J	22599	2023-02-18	2020-09-04	3.1	3.65	—	3.6	0.006	0.71	0.0	0.05	13.14	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.004	0.52	0.0	0.04	14.55	0.00	2.216	5.15	0.12	2.6	97.4	0.0	1.07	0.40	0.63	0.80	3.33	7683	977	5	0	3	0	0	logfile
✔	6VRL	21370	2023-02-17	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.56	0.0	0.04	14.02	0.00	2.159	10.57	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.003	0.71	0.0	0.04	16.18	0.00	2.038	17.54	0.46	6.6	93.4	0.0	-1.10	0.78	0.50	0.70	1.42	6141	764	4	0	4	0	0	logfile
✔	7T5o	25699	2023-02-23	2021-12-12	3.39	3.68	—	3.5	0.007	1.38	6.0	0.08	13.25	0.01	2.295	3.59	0.00	5.1	94.9	0.0	-2.90	0.56	0.47	0.35	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.099	14.66	0.59	6.7	93.3	0.0	-1.64	1.27	0.67	0.62	0.36	21263	2758	5	0	0	0	0	logfile
✔	7FDB	31539	2023-02-24	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7MiS	23863	2023-02-25	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✔	7Li8	23363	2023-02-17	2021-01-26	3.9	4.37	—	4.3	0.002	0.60	0.0	0.04	10.77	0.00	2.230	6.84	0.00	5.3	94.7	0.0	-3.23	0.62	0.72	1.26	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.202	10.39	0.16	7.1	92.9	0.0	-1.27	2.18	0.64	0.76	1.67	6181	767	5	0	14	0	0	logfile
✔	8DD8	27336	2023-02-19	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.30	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.53	0.0	0.04	16.75	0.00	2.198	10.11	0.00	4.0	96.0	0.0	0.42	1.22	0.83	0.84	1.99	10492	1272	2	0	0	0	0	logfile
✘	8CSR	26968	2023-02-27	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✔	7BJ2	12193	2023-02-22	2021-01-13	3.0	3.64	3.01	3.2	0.003	0.62	0.0	0.04	14.87	0.00	2.246	12.91	0.00	4.0	96.0	0.0	0.20	0.72	0.80	2.36	3.2	0.007	0.70	0.0	0.04	16.76	0.00	2.230	13.68	1.03	5.9	94.1	0.0	-0.07	0.53	0.74	0.91	2.91	58552	7956	26	0	0	0	0	logfile
✔	6SGZ	10191	2023-02-20	2019-08-05	3.9	4.15	—	4.0	0.003	0.70	0.0	0.04	13.52	0.00	2.203	12.28	0.00	10.3	89.4	0.3	-4.16	0.66	0.82	1.40	4.0	0.003	0.75	0.0	0.04	15.36	0.00	2.142	12.06	0.26	9.3	90.6	0.1	-0.34	1.26	0.65	0.82	1.16	11177	1505	5	0	0	0	0	logfile
✔	7N95	24250	2023-02-18	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile

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