Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X21	32954	2023-04-21	2022-02-25	2.8	2.23	2.65	2.6	0.005	1.15	0.0	0.05	14.80	0.01	1.943	7.40	0.00	4.0	96.0	0.0	0.45	0.58	0.79	3.97	2.6	0.002	0.79	0.0	0.04	16.99	0.00	2.010	6.82	1.93	2.8	97.2	0.0	0.85	0.35	0.59	0.81	3.22	10167	1263	5	0	10	18	0	logfile
✔	7MR3	23955	2023-04-26	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.39	0.01	2.250	5.33	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.002	0.59	0.0	0.04	17.78	0.00	2.192	8.70	0.08	5.4	94.6	0.0	0.26	0.31	0.83	0.83	1.25	23615	2854	5	40	0	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	7Si6	25138	2023-04-22	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.003	0.85	0.0	0.04	14.76	0.00	1.919	4.22	0.41	1.7	98.3	0.0	2.52	0.39	0.52	0.82	1.82	13515	873	1	0	2	0	6910	logfile
✔	6T79	10390	2023-04-22	2019-10-21	3.2	3.08	3.18	3.1	0.006	0.85	0.0	0.05	28.26	0.01	2.178	5.33	0.00	2.0	98.0	0.0	-3.23	0.73	0.78	2.49	3.0	0.004	0.64	0.0	0.04	29.17	0.00	2.180	10.67	0.93	2.2	97.8	0.0	0.89	1.18	0.75	0.82	2.43	12121	776	10	290	0	0	0	logfile
✔	6B70	7062	2023-04-26	2017-10-03	3.7	4.28	4.09	4.1	0.011	1.26	0.0	0.07	11.30	0.01	2.192	6.22	0.00	4.0	96.0	0.0	-3.94	0.89	0.80	2.01	4.1	0.003	0.73	0.0	0.04	14.33	0.00	2.173	11.10	0.00	5.5	94.5	0.0	-0.47	0.78	0.89	0.81	1.39	22192	2783	8	0	0	0	0	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7DTU	30854	2023-04-21	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	6B3Q	7041	2023-04-23	2017-09-22	3.7	3.84	3.74	3.7	0.005	1.03	0.0	0.06	12.29	0.01	2.212	4.06	0.00	2.6	97.4	0.0	-4.53	0.80	0.78	1.51	3.7	0.003	0.72	0.0	0.04	15.75	0.00	2.159	13.68	0.47	4.4	95.6	0.0	-0.72	0.85	0.82	0.80	1.53	15727	1929	4	0	0	0	0	logfile
✔	7oiU	12933	2023-04-22	2021-05-12	3.7	4.05	3.71	3.8	0.004	0.68	0.0	0.04	12.59	0.00	2.059	10.44	0.00	4.8	95.2	0.0	-0.19	0.73	0.77	2.53	3.8	0.003	0.62	0.0	0.04	14.54	0.00	2.143	10.23	0.41	5.1	94.9	0.0	0.01	0.38	0.73	0.78	2.08	12744	1683	6	0	0	0	0	logfile
✔	7TAN	25777	2023-04-22	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	7PTY	13643	2023-04-22	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.002	0.63	0.0	0.04	13.82	0.00	2.163	16.37	0.00	7.9	92.1	0.0	-0.80	0.39	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	7NJP	12402	2023-04-27	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.36	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.003	0.51	0.0	0.04	15.56	0.00	1.765	7.05	0.34	2.5	97.4	0.0	1.72	0.91	0.86	0.88	3.33	74554	4929	31	0	11	16	37305	logfile
✔	7DTV	30855	2023-04-22	2021-01-06	3.5	3.53	—	3.5	0.008	0.94	0.0	0.07	14.93	0.01	2.189	5.29	0.00	9.8	90.1	0.1	-4.67	0.75	0.83	2.62	3.5	0.003	0.57	0.0	0.04	15.44	0.00	2.190	5.29	0.11	7.2	92.8	0.0	-1.10	0.43	0.73	0.78	2.40	11276	1560	8	0	22	0	0	logfile
✔	8DD3	27333	2023-04-24	2022-06-17	2.9	2.70	2.96	3.1	0.005	0.82	0.0	0.05	12.76	0.00	2.021	6.29	0.00	3.7	96.3	0.0	0.77	0.77	0.85	4.03	3.1	0.003	0.64	0.0	0.04	15.39	0.00	2.145	5.77	1.96	2.8	97.2	0.0	1.18	1.18	0.76	0.87	3.47	17459	2121	17	0	28	0	0	logfile
✔	6T7C	10393	2023-04-21	2019-10-21	4.0	4.27	3.92	3.8	0.008	0.88	1.0	0.05	25.90	0.01	2.081	7.85	0.00	1.7	98.2	0.1	-2.97	0.84	0.80	—	3.9	0.005	0.81	0.0	0.04	26.48	0.00	2.174	16.83	0.78	1.9	98.1	0.0	1.94	1.34	0.86	0.83	—	10606	917	12	190	0	0	0	logfile
✔	7S9V	24938	2023-04-23	2021-09-21	3.3	3.25	—	3.4	0.007	0.86	0.0	0.05	13.96	0.01	2.257	2.04	0.00	5.1	94.9	0.0	-1.75	0.83	0.82	2.23	3.4	0.002	0.53	0.0	0.04	15.36	0.00	2.200	3.70	0.20	3.1	96.9	0.0	-0.13	1.19	0.83	0.83	2.05	14286	1825	3	0	1	0	0	logfile
✔	7RAN	24378	2023-04-20	2021-07-02	3.45	3.40	—	3.5	0.005	0.70	0.0	0.05	12.51	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.003	0.56	0.0	0.04	14.79	0.00	2.095	4.96	0.11	2.8	97.2	0.0	0.67	0.36	0.76	0.84	2.18	8523	1120	6	0	1	0	0	logfile
✔	7JoA	22409	2023-04-23	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	26.00	0.01	2.206	6.32	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.003	0.55	0.0	0.03	26.17	0.00	2.233	6.72	0.00	1.6	98.4	0.0	2.13	4.78	0.81	0.86	1.36	14994	1125	11	290	1	0	0	logfile
✔	8DD2	27332	2023-04-24	2022-06-17	2.9	2.71	2.84	2.9	0.005	0.80	0.0	0.05	12.83	0.01	2.041	5.80	0.00	4.5	95.5	0.0	0.66	0.76	0.86	4.28	2.9	0.002	0.62	0.0	0.04	15.85	0.00	2.178	8.30	2.07	2.8	97.2	0.0	0.67	0.94	0.75	0.89	3.81	17459	2121	17	0	28	0	0	logfile

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