Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oSJ	20183	2022-04-04	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.52	0.80	4.30	4210	610	10	0	0	0	0	logfile
✔	6QQ5	4618	2022-04-05	2019-02-17	3.9	3.85	—	3.8	0.007	1.07	0.0	0.06	14.96	0.01	1.792	4.89	0.00	8.7	91.3	0.0	-6.09	0.71	0.84	3.00	3.8	0.003	0.68	0.0	0.04	16.31	0.00	2.106	7.49	0.17	6.3	93.7	0.0	-1.75	0.45	0.73	0.83	2.18	11829	1476	4	0	8	0	0	logfile
✔	6FN4	4282	2022-04-05	2018-02-02	4.14	4.24	—	4.2	0.005	0.80	0.0	0.05	9.96	0.01	2.096	8.91	0.00	7.5	91.3	1.2	-2.94	0.68	0.75	—	4.2	0.011	0.82	0.0	0.04	12.43	0.01	2.163	8.83	0.00	4.1	95.8	0.1	0.34	1.63	0.70	0.74	—	12702	1626	4	0	4	0	0	logfile
✔	6JBJ	9791	2022-04-04	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.53	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.004	0.81	0.0	0.04	18.28	0.01	2.081	18.24	0.40	8.6	91.4	0.0	-2.07	0.63	0.64	0.82	1.05	9166	1130	4	0	2	0	0	logfile
✔	5M5H	4155	2022-04-04	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6DMR	7965	2022-04-06	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.54	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.37	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6XWo	10633	2022-04-04	2020-01-24	3.39	4.01	—	3.8	0.006	0.69	0.0	0.04	13.23	0.01	2.167	9.83	0.00	6.0	94.0	0.0	-3.53	0.74	0.82	1.64	3.8	0.004	0.67	0.0	0.04	14.92	0.00	2.197	9.83	0.00	3.5	96.5	0.0	0.87	0.51	0.73	0.86	1.15	9555	1281	3	0	0	0	0	logfile
✔	6NF6	9361	2022-04-04	2018-12-18	3.32	3.42	—	3.4	0.007	0.98	0.0	0.06	15.65	0.01	2.309	4.98	0.00	4.5	95.2	0.3	-2.74	0.54	0.79	2.76	3.4	0.003	0.60	0.0	0.04	16.56	0.00	2.131	11.89	0.41	4.0	96.0	0.0	2.48	0.56	0.56	0.80	2.45	6598	822	4	0	2	0	0	logfile
✔	6Ni2	9375	2022-04-05	2018-12-26	4.0	4.38	—	4.1	0.009	1.30	0.0	0.07	10.25	0.01	2.245	6.60	0.00	6.7	93.1	0.1	-1.50	0.75	0.71	—	4.1	0.004	0.77	0.0	0.05	14.90	0.01	2.147	14.71	0.35	5.7	94.3	0.0	0.22	1.38	0.75	0.73	—	5381	704	5	0	0	0	0	logfile
✔	6ERi	3941	2022-04-10	2017-10-18	3.0	3.06	3.00	3.0	0.003	0.45	0.0	0.03	11.66	0.00	1.251	2.49	0.00	4.3	95.7	0.0	-3.80	0.66	0.74	2.70	3.0	0.005	0.65	0.0	0.04	14.85	0.01	1.800	8.30	3.44	5.3	94.7	0.0	-0.78	1.22	0.83	0.86	2.54	145026	6178	66	4401	515	0	0	logfile
✔	5iRX	8117	2022-04-05	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.69	0.0	0.04	16.93	0.00	2.250	7.69	1.54	8.5	91.5	0.0	-1.10	0.67	0.63	0.82	2.03	13162	1726	12	0	20	0	0	logfile
✔	5L93	4015	2022-04-08	2016-06-09	3.9	4.05	—	4.1	0.004	0.92	0.0	0.04	8.71	0.00	1.566	7.24	0.00	9.8	90.2	0.0	-2.97	0.53	0.75	1.23	4.0	0.005	0.79	0.0	0.04	17.20	0.01	2.158	12.49	0.39	7.5	92.4	0.2	0.31	1.72	0.56	0.82	1.30	31212	4032	18	0	0	0	0	logfile
✔	5YRN	6842	2022-04-04	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.8	0.004	0.87	0.0	0.04	14.72	0.00	2.104	21.86	0.00	3.4	96.6	0.0	-0.52	2.86	0.63	0.78	—	8280	1044	12	0	0	0	0	logfile
✔	5WK6	8856	2022-04-10	2017-07-24	4.3	4.51	—	4.5	0.013	1.25	0.0	0.05	10.13	0.01	2.029	21.17	0.00	7.2	92.8	0.0	-3.04	0.36	0.74	—	4.5	0.004	0.67	0.0	0.04	14.45	0.00	1.846	19.51	0.05	8.9	91.1	0.0	1.44	2.46	0.39	0.76	—	161663	11029	41	0	0	0	80524	logfile
✔	6HRE	0259	2022-04-04	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.22	0.50	9.3	90.7	0.0	-3.49	0.81	0.30	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	6UPK	20840	2022-04-05	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.39	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.67	0.0	0.04	22.35	0.00	1.960	22.55	0.00	5.1	94.9	0.0	-1.43	2.95	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	5N8o	3601	2022-04-05	2017-02-23	3.9	4.00	—	3.9	0.008	1.26	0.0	0.07	11.99	0.01	1.878	9.72	0.00	15.0	84.8	0.2	-5.69	0.75	0.77	1.84	3.9	0.004	0.91	0.0	0.04	16.22	0.00	2.142	15.53	0.43	12.3	87.7	0.0	-2.49	2.29	0.77	0.78	0.94	11362	1432	2	18	0	0	0	logfile
✔	6GTD	0062	2022-04-04	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6HCR	0198	2022-04-19	2018-08-16	3.5	3.63	—	3.6	0.007	1.10	0.0	0.06	11.32	0.01	2.353	2.91	0.00	14.7	85.3	0.0	-4.63	0.83	0.87	3.48	3.6	0.005	0.75	0.0	0.05	14.80	0.00	2.133	6.91	0.33	14.5	85.5	0.0	-3.27	0.53	0.84	0.88	2.72	213720	26460	60	0	0	0	0	logfile
✔	6oo2	20142	2022-04-05	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.004	0.74	0.0	0.04	12.97	0.00	0.867	17.91	0.00	5.8	94.2	0.0	1.38	1.01	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile

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