Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L87	23224	2022-07-04	2020-12-31	3.6	3.72	3.54	3.7	0.022	1.72	2.0	0.15	9.97	0.02	2.027	2.18	0.00	2.4	97.6	0.0	0.74	0.70	0.82	3.36	3.7	0.005	0.66	0.0	0.04	14.67	0.00	2.174	7.98	0.54	4.5	95.5	0.0	-0.16	1.26	0.70	0.82	2.86	15766	1677	53	0	326	0	0	logfile
✔	7L8U	23237	2022-07-04	2021-01-01	4.5	4.63	4.35	4.5	0.021	1.74	2.0	0.14	10.91	0.02	2.199	2.75	0.00	2.9	97.1	0.0	0.24	0.73	0.78	—	4.5	0.003	0.67	0.0	0.04	12.81	0.00	2.098	12.15	0.00	3.7	96.3	0.0	-0.55	1.40	0.73	0.80	—	15475	1675	25	0	300	0	0	logfile
✔	7L8Y	23240	2022-07-04	2021-01-01	4.2	4.30	4.00	4.2	0.020	1.64	1.0	0.13	10.06	0.02	2.188	2.25	0.00	2.4	97.6	0.0	1.02	0.71	0.81	—	4.2	0.003	0.63	0.0	0.04	12.91	0.00	2.148	8.64	0.00	2.2	97.8	0.0	0.22	0.89	0.71	0.82	—	15903	1739	27	0	292	0	0	logfile
✔	7L8X	23239	2022-07-04	2021-01-01	3.0	4.09	3.80	4.0	0.021	1.66	0.0	0.14	10.12	0.02	2.275	1.32	0.00	2.1	97.9	0.0	0.95	0.70	0.77	2.79	4.0	0.006	0.79	0.0	0.05	15.17	0.01	2.171	10.75	3.27	3.6	96.4	0.1	-0.53	1.34	0.65	0.78	2.51	16090	1721	37	0	318	0	0	logfile
✔	7L8B	23228	2022-07-04	2020-12-31	3.7	3.83	3.64	3.8	0.022	1.68	2.0	0.14	9.99	0.02	1.218	2.39	0.00	2.3	97.7	0.0	1.11	0.70	0.83	3.74	3.8	0.005	0.65	0.0	0.05	14.45	0.00	2.140	7.57	0.53	4.0	96.0	0.0	-0.11	0.73	0.70	0.84	3.14	15704	1682	42	0	320	0	0	logfile
✔	7L86	23223	2022-07-04	2020-12-31	3.4	3.54	3.36	3.5	0.022	1.66	0.0	0.14	9.48	0.02	2.361	1.32	0.00	1.5	98.5	0.0	0.97	0.73	0.84	4.17	3.5	0.004	0.61	0.0	0.04	13.85	0.00	2.186	6.23	0.27	2.5	97.5	0.0	0.12	0.62	0.73	0.86	3.10	15802	1686	47	0	323	0	0	logfile
✔	7L8T	23236	2022-07-04	2020-12-31	3.7	3.86	3.60	3.8	0.022	1.67	2.0	0.13	9.94	0.01	2.311	1.87	0.00	1.7	98.3	0.0	0.90	0.72	0.84	3.25	3.8	0.003	0.63	0.0	0.04	14.22	0.00	2.134	7.43	0.51	3.0	97.0	0.1	0.00	1.27	0.71	0.84	2.23	16337	1776	26	0	306	0	0	logfile
✔	7L88	23225	2022-07-04	2020-12-31	3.6	3.68	3.49	3.6	0.021	1.69	5.0	0.14	9.83	0.01	2.004	2.53	0.00	2.3	97.7	0.0	0.89	0.71	0.83	3.75	3.6	0.004	0.62	0.0	0.04	14.15	0.00	2.096	7.50	0.40	3.7	96.3	0.0	-0.45	1.25	0.71	0.84	3.00	15634	1677	43	0	314	0	0	logfile
✔	7L8C	23229	2022-07-04	2020-12-31	3.4	3.54	3.26	3.5	0.025	1.69	5.0	0.15	9.87	0.01	2.049	1.60	0.00	1.7	98.3	0.0	0.69	0.73	0.87	4.33	3.5	0.003	0.57	0.0	0.04	13.64	0.00	2.171	5.12	0.07	2.1	97.9	0.0	0.11	1.22	0.72	0.87	3.09	15963	1691	56	0	331	0	0	logfile
✔	7L8A	23227	2022-07-04	2020-12-31	3.3	3.46	3.34	3.4	0.022	1.65	1.0	0.14	9.76	0.01	2.195	1.49	0.00	1.8	98.2	0.0	0.68	0.74	0.86	4.33	3.4	0.004	0.57	0.0	0.04	13.98	0.00	2.164	5.17	0.20	2.7	97.3	0.0	-0.15	1.59	0.72	0.86	3.50	15728	1687	47	0	317	0	0	logfile
✔	7MKH	23894	2022-07-03	2021-04-23	3.3	3.35	—	4.2	0.023	1.99	0.0	0.10	8.93	0.01	2.387	1.28	0.00	6.8	93.2	0.0	-2.24	0.48	0.68	2.35	3.6	0.004	0.71	0.0	0.05	12.73	0.00	2.050	12.55	0.91	8.8	91.2	0.0	-3.70	1.34	0.46	0.65	2.22	11720	750	10	0	0	0	5980	logfile
✔	7DPA	30802	2022-07-06	2020-12-18	3.8	4.83	3.79	3.0	0.006	0.84	0.0	0.05	15.30	0.01	2.038	22.35	0.00	12.3	87.7	0.0	-3.05	0.70	0.39	0.50	3.0	0.003	0.80	0.0	0.04	16.87	0.00	2.042	21.54	0.11	8.4	91.6	0.0	-1.56	1.15	0.90	0.78	0.14	32858	4034	6	0	0	0	0	logfile
✔	7CKC	30385	2022-07-10	2020-07-16	2.9	2.95	—	2.9	0.007	0.92	0.0	0.05	16.47	0.01	2.090	5.46	0.00	2.2	97.8	0.0	-0.01	0.81	0.87	3.65	2.9	0.004	0.68	0.0	0.04	17.51	0.00	2.071	5.77	1.96	2.2	97.8	0.0	0.67	1.55	0.81	0.88	3.39	150300	20820	240	0	0	0	0	logfile
✔	7L7U	23219	2022-07-04	2020-12-30	3.8	3.94	3.66	3.9	0.022	1.65	3.0	0.14	10.41	0.02	2.411	2.06	0.00	1.4	98.6	0.0	0.66	0.76	0.83	2.40	3.9	0.004	0.63	0.0	0.04	14.91	0.00	2.186	8.87	0.51	1.7	98.3	0.0	0.40	0.79	0.75	0.82	1.67	15258	1761	36	0	96	0	0	logfile
✘	7LPC	23476	2022-07-04	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.17	0.0	0.21	19.57	0.00	1.232	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15256	1816	8	0	40	0	0	logfile
✔	7LPE	23479	2022-07-04	2021-02-11	3.72	4.18	3.77	4.0	0.011	1.29	0.0	0.06	15.39	0.01	2.219	11.71	0.00	6.1	93.9	0.0	-0.86	0.60	0.67	1.26	4.0	0.004	0.74	0.0	0.04	16.93	0.00	2.095	16.06	0.46	5.3	94.7	0.0	0.73	1.28	0.61	0.69	0.94	13844	1944	8	0	12	0	0	logfile
✘	7LPA	23474	2022-07-04	2021-02-11	3.37	3.43	3.23	3.5	0.008	0.82	0.0	0.05	17.52	0.00	1.233	7.90	0.00	4.1	95.9	0.0	-0.82	0.56	0.75	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18634	2392	8	0	30	0	0	logfile
✔	7MLZ	23914	2022-07-03	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.34	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.78	0.0	0.05	15.40	0.01	2.101	18.55	0.37	17.9	82.0	0.2	-4.24	0.52	0.82	0.65	1.02	4864	624	4	0	5	0	0	logfile
✔	7LPD	23478	2022-07-04	2021-02-11	3.55	3.87	3.71	3.8	0.010	1.09	0.0	0.09	17.93	0.00	1.966	8.05	0.00	2.7	97.3	0.0	-0.33	0.66	0.77	2.95	3.8	0.003	0.64	0.0	0.04	17.12	0.00	2.153	10.04	0.77	2.7	97.3	0.0	1.10	1.29	0.61	0.77	1.68	15564	1988	8	0	24	0	0	logfile
✘	7N6B	24206	2022-07-03	2021-06-08	2.66	2.57	—	2.6	0.005	0.71	0.0	0.05	12.95	0.01	1.179	8.98	0.00	3.3	96.7	0.0	0.66	0.53	0.72	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5942	757	1	0	2	0	0	logfile

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