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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7X21 | 32954 | 2023-04-21 | 2022-02-25 | 2.8 | 2.23 | 2.65 | 2.6 | 0.005 | 1.15 | 0.0 | 0.05 | 14.80 | 0.01 | 1.943 | 7.40 | 0.00 | 4.0 | 96.0 | 0.0 | 0.45 | 0.58 | 0.79 | 3.97 | 2.6 | 0.002 | 0.79 | 0.0 | 0.04 | 16.99 | 0.00 | 2.010 | 6.82 | 1.93 | 2.8 | 97.2 | 0.0 | 0.85 | 0.35 | 0.59 | 0.81 | 3.22 | 10167 | 1263 | 5 | 0 | 10 | 18 | 0 | logfile |
✔ | 7MR3 | 23955 | 2023-04-26 | 2021-05-07 | 3.6 | 4.01 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 16.39 | 0.01 | 2.250 | 5.33 | 0.00 | 6.5 | 93.5 | 0.0 | -1.62 | 0.83 | 0.82 | 1.78 | 3.9 | 0.002 | 0.59 | 0.0 | 0.04 | 17.78 | 0.00 | 2.192 | 8.70 | 0.08 | 5.4 | 94.6 | 0.0 | 0.26 | 0.31 | 0.83 | 0.83 | 1.25 | 23615 | 2854 | 5 | 40 | 0 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-04-19 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si6 | 25138 | 2023-04-22 | 2021-10-12 | 3.32 | 3.28 | — | 3.3 | 0.003 | 1.22 | 0.0 | 0.04 | 13.58 | 0.00 | 2.044 | 4.51 | 0.00 | 1.4 | 98.6 | 0.0 | 2.88 | 0.46 | 0.77 | 1.67 | 3.3 | 0.003 | 0.85 | 0.0 | 0.04 | 14.76 | 0.00 | 1.919 | 4.22 | 0.41 | 1.7 | 98.3 | 0.0 | 2.52 | 0.39 | 0.52 | 0.82 | 1.82 | 13515 | 873 | 1 | 0 | 2 | 0 | 6910 | logfile |
✔ | 6T79 | 10390 | 2023-04-22 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.26 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 29.17 | 0.00 | 2.180 | 10.67 | 0.93 | 2.2 | 97.8 | 0.0 | 0.89 | 1.18 | 0.75 | 0.82 | 2.43 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6B70 | 7062 | 2023-04-26 | 2017-10-03 | 3.7 | 4.28 | 4.09 | 4.1 | 0.011 | 1.26 | 0.0 | 0.07 | 11.30 | 0.01 | 2.192 | 6.22 | 0.00 | 4.0 | 96.0 | 0.0 | -3.94 | 0.89 | 0.80 | 2.01 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.33 | 0.00 | 2.173 | 11.10 | 0.00 | 5.5 | 94.5 | 0.0 | -0.47 | 0.78 | 0.89 | 0.81 | 1.39 | 22192 | 2783 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TZ0 | 26201 | 2023-04-19 | 2022-02-15 | 4.17 | 3.79 | — | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 12.38 | 0.01 | 2.265 | 10.65 | 0.00 | 7.9 | 92.1 | 0.0 | -1.73 | 0.41 | 0.61 | — | 4.0 | 0.004 | 0.77 | 0.0 | 0.05 | 12.39 | 0.00 | 2.106 | 22.26 | 0.35 | 12.2 | 87.8 | 0.0 | -2.19 | 1.41 | 0.44 | 0.64 | — | 2674 | 347 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DTU | 30854 | 2023-04-21 | 2021-01-06 | 4.4 | 4.54 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.06 | 14.57 | 0.01 | 2.277 | 6.85 | 0.00 | 9.4 | 90.6 | 0.0 | -3.95 | 0.68 | 0.79 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.14 | 0.00 | 2.169 | 11.99 | 0.00 | 6.5 | 93.5 | 0.0 | -0.70 | 1.10 | 0.68 | 0.80 | — | 10846 | 1558 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 6B3Q | 7041 | 2023-04-23 | 2017-09-22 | 3.7 | 3.84 | 3.74 | 3.7 | 0.005 | 1.03 | 0.0 | 0.06 | 12.29 | 0.01 | 2.212 | 4.06 | 0.00 | 2.6 | 97.4 | 0.0 | -4.53 | 0.80 | 0.78 | 1.51 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.75 | 0.00 | 2.159 | 13.68 | 0.47 | 4.4 | 95.6 | 0.0 | -0.72 | 0.85 | 0.82 | 0.80 | 1.53 | 15727 | 1929 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oiU | 12933 | 2023-04-22 | 2021-05-12 | 3.7 | 4.05 | 3.71 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 12.59 | 0.00 | 2.059 | 10.44 | 0.00 | 4.8 | 95.2 | 0.0 | -0.19 | 0.73 | 0.77 | 2.53 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.54 | 0.00 | 2.143 | 10.23 | 0.41 | 5.1 | 94.9 | 0.0 | 0.01 | 0.38 | 0.73 | 0.78 | 2.08 | 12744 | 1683 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TAN | 25777 | 2023-04-22 | 2021-12-21 | 3.0 | 2.95 | — | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 27.32 | 0.00 | 2.287 | 3.25 | 0.00 | 2.8 | 97.2 | 0.0 | 2.18 | 0.82 | 0.85 | 2.22 | 3.1 | 0.004 | 0.51 | 0.0 | 0.03 | 27.86 | 0.00 | 2.221 | 2.61 | 0.78 | 2.0 | 98.0 | 0.0 | 2.33 | 0.33 | 0.83 | 0.87 | 2.17 | 12119 | 768 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 7PTY | 13643 | 2023-04-22 | 2021-09-27 | 4.63 | 5.10 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.76 | 0.00 | 2.199 | 25.20 | 0.00 | 10.9 | 89.1 | 0.0 | -1.41 | 0.88 | 0.76 | — | 4.5 | 0.002 | 0.63 | 0.0 | 0.04 | 13.82 | 0.00 | 2.163 | 16.37 | 0.00 | 7.9 | 92.1 | 0.0 | -0.80 | 0.39 | 0.89 | 0.77 | — | 13433 | 1715 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NJP | 12402 | 2023-04-27 | 2021-02-17 | 2.84 | 2.89 | — | 2.7 | 0.003 | 0.50 | 0.0 | 0.04 | 14.36 | 0.00 | 2.035 | 6.55 | 0.00 | 2.3 | 97.7 | 0.0 | 1.92 | 0.86 | 0.86 | 3.44 | 2.7 | 0.003 | 0.51 | 0.0 | 0.04 | 15.56 | 0.00 | 1.765 | 7.05 | 0.34 | 2.5 | 97.4 | 0.0 | 1.72 | 0.91 | 0.86 | 0.88 | 3.33 | 74554 | 4929 | 31 | 0 | 11 | 16 | 37305 | logfile |
✔ | 7DTV | 30855 | 2023-04-22 | 2021-01-06 | 3.5 | 3.53 | — | 3.5 | 0.008 | 0.94 | 0.0 | 0.07 | 14.93 | 0.01 | 2.189 | 5.29 | 0.00 | 9.8 | 90.1 | 0.1 | -4.67 | 0.75 | 0.83 | 2.62 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.44 | 0.00 | 2.190 | 5.29 | 0.11 | 7.2 | 92.8 | 0.0 | -1.10 | 0.43 | 0.73 | 0.78 | 2.40 | 11276 | 1560 | 8 | 0 | 22 | 0 | 0 | logfile |
✔ | 8DD3 | 27333 | 2023-04-24 | 2022-06-17 | 2.9 | 2.70 | 2.96 | 3.1 | 0.005 | 0.82 | 0.0 | 0.05 | 12.76 | 0.00 | 2.021 | 6.29 | 0.00 | 3.7 | 96.3 | 0.0 | 0.77 | 0.77 | 0.85 | 4.03 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 15.39 | 0.00 | 2.145 | 5.77 | 1.96 | 2.8 | 97.2 | 0.0 | 1.18 | 1.18 | 0.76 | 0.87 | 3.47 | 17459 | 2121 | 17 | 0 | 28 | 0 | 0 | logfile |
✔ | 6T7C | 10393 | 2023-04-21 | 2019-10-21 | 4.0 | 4.27 | 3.92 | 3.8 | 0.008 | 0.88 | 1.0 | 0.05 | 25.90 | 0.01 | 2.081 | 7.85 | 0.00 | 1.7 | 98.2 | 0.1 | -2.97 | 0.84 | 0.80 | — | 3.9 | 0.005 | 0.81 | 0.0 | 0.04 | 26.48 | 0.00 | 2.174 | 16.83 | 0.78 | 1.9 | 98.1 | 0.0 | 1.94 | 1.34 | 0.86 | 0.83 | — | 10606 | 917 | 12 | 190 | 0 | 0 | 0 | logfile |
✔ | 7S9V | 24938 | 2023-04-23 | 2021-09-21 | 3.3 | 3.25 | — | 3.4 | 0.007 | 0.86 | 0.0 | 0.05 | 13.96 | 0.01 | 2.257 | 2.04 | 0.00 | 5.1 | 94.9 | 0.0 | -1.75 | 0.83 | 0.82 | 2.23 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 15.36 | 0.00 | 2.200 | 3.70 | 0.20 | 3.1 | 96.9 | 0.0 | -0.13 | 1.19 | 0.83 | 0.83 | 2.05 | 14286 | 1825 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RAN | 24378 | 2023-04-20 | 2021-07-02 | 3.45 | 3.40 | — | 3.5 | 0.005 | 0.70 | 0.0 | 0.05 | 12.51 | 0.00 | 2.091 | 5.14 | 0.00 | 3.0 | 97.0 | 0.0 | 0.61 | 0.75 | 0.81 | 2.69 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 14.79 | 0.00 | 2.095 | 4.96 | 0.11 | 2.8 | 97.2 | 0.0 | 0.67 | 0.36 | 0.76 | 0.84 | 2.18 | 8523 | 1120 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7JoA | 22409 | 2023-04-23 | 2020-08-06 | 3.3 | 3.05 | — | 3.2 | 0.009 | 0.78 | 0.0 | 0.04 | 26.00 | 0.01 | 2.206 | 6.32 | 0.00 | 6.5 | 93.5 | 0.0 | -0.33 | 0.79 | 0.82 | 1.49 | 3.2 | 0.003 | 0.55 | 0.0 | 0.03 | 26.17 | 0.00 | 2.233 | 6.72 | 0.00 | 1.6 | 98.4 | 0.0 | 2.13 | 4.78 | 0.81 | 0.86 | 1.36 | 14994 | 1125 | 11 | 290 | 1 | 0 | 0 | logfile |
✔ | 8DD2 | 27332 | 2023-04-24 | 2022-06-17 | 2.9 | 2.71 | 2.84 | 2.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.83 | 0.01 | 2.041 | 5.80 | 0.00 | 4.5 | 95.5 | 0.0 | 0.66 | 0.76 | 0.86 | 4.28 | 2.9 | 0.002 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 2.178 | 8.30 | 2.07 | 2.8 | 97.2 | 0.0 | 0.67 | 0.94 | 0.75 | 0.89 | 3.81 | 17459 | 2121 | 17 | 0 | 28 | 0 | 0 | logfile |