Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Wi9	21683	2022-12-12	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.56	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.90	0.00	2.148	14.34	0.11	6.7	93.3	0.0	-0.74	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6UWL	20923	2022-12-11	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.77	0.0	0.04	16.09	0.00	2.200	12.65	0.64	6.3	93.7	0.0	-0.08	0.55	0.66	0.81	1.34	3029	402	1	0	1	0	0	logfile
✔	6RF8	4862	2022-12-13	2019-04-12	3.8	3.98	—	3.9	0.006	0.83	0.0	0.05	11.84	0.01	2.084	3.36	0.00	4.8	95.2	0.0	-4.91	0.86	0.86	2.95	3.9	0.004	0.65	0.0	0.04	14.92	0.00	1.965	9.61	0.26	5.5	94.5	0.0	-1.05	0.74	0.85	0.87	2.63	14407	1821	9	2	4	0	0	logfile
✔	6WJ3	21687	2022-12-12	2020-04-11	3.9	4.46	4.05	4.2	0.009	0.50	0.0	0.04	12.83	0.00	2.210	8.27	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.002	0.66	0.0	0.04	14.95	0.00	2.194	10.27	0.54	4.7	95.3	0.0	-0.30	1.73	0.86	0.77	0.77	8912	1168	10	1	1	0	0	logfile
✔	6UWF	20922	2022-12-11	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.243	6.27	0.92	3.1	96.9	0.0	0.94	0.31	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	6Y5K	10700	2022-12-12	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.75	0.0	0.05	12.95	0.00	2.096	10.85	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.004	0.73	0.0	0.05	12.90	0.00	2.075	18.08	0.00	3.3	96.7	0.0	-0.02	1.00	0.87	0.79	—	10614	1335	9	0	6	0	0	logfile
✔	6LN8	0927	2022-12-11	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.53	0.0	0.04	15.04	0.00	1.382	9.05	0.00	3.1	96.9	0.0	0.12	0.47	0.69	0.82	1.72	7739	1003	1	0	2	0	0	logfile
✔	6T7A	10391	2022-12-12	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.74	0.0	0.04	26.57	0.00	2.139	15.48	0.47	2.3	97.7	0.0	2.40	1.76	0.87	0.85	1.51	10338	847	11	190	0	0	0	logfile
✘	5YWP	6855	2022-12-18	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	48.83	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19561	2588	10	0	0	0	0	logfile
✔	6VW2	21410	2022-12-11	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6REV	4858	2022-12-13	2019-04-12	3.8	3.81	—	3.8	0.006	0.87	0.0	0.05	11.71	0.01	2.117	2.65	0.00	5.6	94.4	0.0	-5.13	0.82	0.85	3.29	3.8	0.003	0.63	0.0	0.04	14.89	0.00	1.978	8.48	0.19	4.5	95.5	0.0	-1.34	2.11	0.81	0.86	2.57	14407	1821	9	2	4	0	0	logfile
✔	6YTo	10920	2022-12-21	2020-04-24	4.24	4.32	4.19	4.3	0.005	0.70	0.0	0.04	13.41	0.00	2.282	10.25	0.00	1.9	98.1	0.0	-0.08	0.67	0.83	—	4.3	0.003	0.64	0.0	0.04	13.46	0.00	2.204	9.22	0.06	2.5	97.5	0.0	2.64	0.71	0.67	0.83	—	41620	5340	20	0	0	0	0	logfile
✔	6WHC	21671	2022-12-12	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.62	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.002	0.64	0.0	0.04	15.76	0.00	2.153	10.65	0.11	2.8	97.2	0.0	-0.40	1.02	0.82	0.83	1.69	8709	1126	6	0	0	0	0	logfile
✔	6V1X	21018	2022-12-13	2019-11-21	3.5	3.62	—	3.7	0.011	1.19	4.0	0.07	10.58	0.01	2.279	4.06	0.00	9.5	90.3	0.2	-3.79	0.49	0.59	1.89	3.5	0.004	0.65	0.0	0.04	14.65	0.00	2.145	5.59	0.45	6.1	93.6	0.3	0.62	2.00	0.57	0.79	2.46	13996	1784	8	0	8	0	0	logfile
✔	6LN9	0928	2022-12-11	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.86	0.00	1.358	10.76	0.24	4.5	95.5	0.0	-0.23	0.53	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	6V4U	21048	2022-12-11	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.0	0.004	0.80	0.0	0.05	13.43	0.01	2.168	13.63	0.61	13.6	86.4	0.0	-2.00	0.90	0.76	0.68	1.46	7074	1106	3	0	0	0	0	logfile
✔	6TEA	10478	2022-12-15	2019-11-11	3.89	4.22	—	4.0	0.008	1.34	0.0	0.08	12.64	0.01	2.273	14.75	0.00	11.9	88.1	0.0	-4.86	0.89	0.84	1.48	3.9	0.006	1.02	0.0	0.05	16.92	0.00	2.081	35.51	2.19	9.0	91.0	0.0	-3.02	1.03	0.91	0.87	1.48	23328	3120	24	0	0	0	0	logfile
✔	6LHV	0900	2022-12-13	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6YTQ	10921	2022-12-21	2020-04-24	4.02	4.09	3.98	4.0	0.006	0.68	0.0	0.04	13.94	0.00	2.345	6.64	0.00	3.3	96.7	0.0	-0.58	0.68	0.83	—	4.0	0.003	0.62	0.0	0.04	13.87	0.00	2.183	7.23	0.04	3.0	97.0	0.0	2.84	2.00	0.66	0.82	—	45782	5874	22	0	0	0	0	logfile
✔	6VN7	21249	2022-12-12	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.34	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.002	0.54	0.0	0.04	14.13	0.00	2.153	7.52	0.33	2.1	97.9	0.0	1.31	0.74	0.56	0.73	1.57	8620	1052	7	0	10	0	0	logfile

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