Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GZ1	34387	2023-11-15	2022-09-24	3.4	3.77	3.44	3.7	0.004	0.68	0.0	0.05	14.29	0.00	1.940	11.26	0.00	5.0	95.0	0.0	0.65	0.55	0.77	2.03	3.7	0.005	0.73	0.0	0.04	16.26	0.00	2.140	10.34	0.78	5.3	94.7	0.0	0.91	0.53	0.57	0.80	1.79	11912	1445	10	0	19	0	0	logfile
✔	8PPo	17806	2023-11-13	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	13.89	0.00	2.300	0.00	1.04	0.0	100.0	0.0	1.18	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	7DDQ	30656	2023-11-18	2020-10-29	2.84	3.56	—	3.1	0.012	1.92	0.0	0.06	20.42	0.00	1.706	13.94	0.00	4.7	95.3	0.0	1.05	0.77	0.77	4.39	3.2	0.004	1.18	0.0	0.04	20.83	0.00	1.893	13.72	2.05	4.3	95.7	0.0	1.73	1.36	0.79	0.89	3.56	22571	2354	64	0	62	0	0	logfile
✔	7WY0	32883	2023-11-14	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	7UM7	26599	2023-11-14	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✘	7SCJ	25036	2023-11-14	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	11.12	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✔	7TRA	26084	2023-11-21	2022-01-28	3.3	3.94	—	3.8	0.003	0.60	0.0	0.04	15.24	0.00	2.017	16.19	0.00	7.6	92.1	0.3	-1.17	0.80	0.73	0.77	3.7	0.004	0.75	0.0	0.05	17.21	0.00	2.001	22.70	0.23	8.7	91.0	0.3	-1.40	1.37	0.83	0.81	1.30	34872	4174	20	113	2	0	0	logfile
✔	7S8L	24896	2023-11-14	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7XP5	33365	2023-11-14	2022-05-03	3.08	2.39	3.13	2.1	0.004	0.59	0.0	0.04	12.66	0.00	2.198	8.66	0.00	3.1	96.9	0.0	1.69	0.74	0.75	2.94	2.1	0.005	0.64	0.0	0.04	15.41	0.00	1.995	9.56	0.22	3.4	96.6	0.0	1.55	1.11	0.75	0.78	2.32	8381	1059	5	0	0	0	0	logfile
✔	7WY5	32884	2023-11-14	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.003	0.60	0.0	0.04	15.45	0.00	2.154	5.58	0.92	3.5	96.5	0.0	0.77	0.39	0.78	0.78	2.47	8009	1013	5	0	0	0	0	logfile
✔	7WXU	32881	2023-11-14	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.60	0.0	0.04	15.70	0.00	2.117	3.76	2.37	3.8	96.2	0.0	0.64	0.37	0.80	0.80	2.43	8116	1034	5	0	0	0	0	logfile
✔	7UWJ	26833	2023-11-13	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.05	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.69	0.0	0.04	15.07	0.00	2.209	10.86	1.00	5.8	94.2	0.0	-2.11	0.45	0.68	0.65	1.84	5314	664	6	0	6	0	0	logfile
✔	6V0J	21000	2023-11-16	2019-11-18	3.78	3.93	—	3.8	0.006	0.88	0.0	0.05	10.19	0.01	2.373	5.04	0.00	5.8	94.0	0.3	-3.23	0.83	0.83	2.89	3.8	0.003	0.74	0.0	0.05	14.13	0.00	2.207	11.88	0.24	5.2	94.8	0.0	-1.55	4.22	0.83	0.83	2.53	15252	2010	6	0	0	0	0	logfile
✔	7Y1R	33571	2023-11-14	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	13.08	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.24	0.01	2.208	11.89	0.00	8.3	91.7	0.0	-2.56	1.24	0.63	0.61	—	8565	1041	11	0	20	0	0	logfile
✔	7SPA	25370	2023-11-14	2021-11-02	2.8	3.04	—	2.9	0.004	0.57	0.0	0.05	11.96	0.00	2.275	6.27	0.00	1.4	98.6	0.0	1.68	0.71	0.77	2.48	2.9	0.004	0.65	0.0	0.04	15.48	0.00	2.078	9.94	1.59	3.0	96.8	0.1	1.36	0.78	0.76	0.86	4.32	6017	737	3	0	3	0	0	logfile
✔	8SAS	40278	2023-11-17	2023-04-01	4.0	4.28	4.02	4.2	0.008	1.18	0.0	0.06	13.80	0.01	2.002	4.09	0.00	8.7	90.9	0.4	-3.16	0.69	0.72	—	4.2	0.005	0.88	0.0	0.05	16.52	0.00	2.037	14.56	0.98	8.4	91.3	0.3	-2.21	1.04	0.74	0.80	—	20028	2472	24	0	66	0	0	logfile
✔	6V0i	20999	2023-11-16	2019-11-18	3.43	3.14	—	3.1	0.007	1.18	0.0	0.07	10.96	0.01	2.274	4.28	0.00	1.4	98.6	0.0	-2.32	0.77	0.82	2.98	3.1	0.004	0.70	0.0	0.05	14.99	0.00	2.261	10.06	0.46	3.5	96.5	0.0	-1.29	0.84	0.80	0.87	2.98	15942	2106	6	0	0	0	0	logfile
✔	7UM5	26597	2023-11-14	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.57	0.0	0.04	11.84	0.00	2.281	2.29	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.14	0.00	2.252	3.96	1.06	4.1	95.9	0.0	0.30	0.34	0.83	0.83	3.86	8277	1104	6	0	1	1	0	logfile
✔	8HC7	34654	2023-11-14	2022-11-01	4.54	4.75	4.46	4.5	0.003	0.61	0.0	0.04	13.42	0.00	2.255	5.72	0.00	4.7	95.3	0.0	-1.52	0.77	0.68	—	4.5	0.003	0.59	0.0	0.04	13.35	0.00	2.186	13.65	0.25	7.2	92.8	0.0	-1.21	1.75	0.80	0.75	—	7373	919	6	0	7	0	0	logfile
✔	5VCA	8659	2023-11-16	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile

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