Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RU6	24698	2023-04-20	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	7PZR	13736	2023-04-23	2021-10-13	3.0	3.57	—	3.3	0.004	0.71	0.0	0.04	12.71	0.01	2.062	11.63	0.00	1.5	98.5	0.0	3.84	0.77	0.69	1.43	3.3	0.005	0.89	0.0	0.05	16.07	0.01	2.079	21.17	1.77	2.0	98.0	0.0	1.77	2.50	0.80	0.77	0.93	7404	935	1	0	0	0	0	logfile
✘	8EP0	28494	2023-04-27	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	7QPC	14117	2023-04-21	2022-01-03	3.44	3.64	3.38	3.7	0.003	1.07	0.0	0.04	14.77	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.54	0.0	0.03	15.30	0.00	2.115	7.87	0.00	3.1	96.9	0.0	1.53	0.28	0.58	0.80	1.35	10830	654	6	0	4	62	5540	logfile
✔	7KAH	22770	2023-04-21	2020-10-01	3.1	3.79	3.14	3.5	0.003	0.53	0.0	0.04	12.90	0.00	2.257	4.61	0.00	3.2	96.8	0.0	-1.32	0.69	0.86	2.50	3.5	0.003	0.56	0.0	0.04	14.66	0.00	2.160	5.69	0.18	2.2	97.8	0.0	2.04	1.27	0.69	0.87	1.94	10495	1349	6	0	0	0	0	logfile
✔	7VXM	32184	2023-04-29	2021-11-12	3.6	3.96	—	3.8	0.002	0.51	0.0	0.04	7.69	0.00	2.159	7.97	0.00	3.9	95.9	0.2	-2.41	0.49	0.54	0.82	3.8	0.003	0.66	0.0	0.04	14.30	0.00	2.086	11.95	0.24	3.5	96.5	0.0	-0.04	1.68	0.58	0.73	1.22	29901	3791	4	0	0	0	0	logfile
✔	6UPK	20840	2023-04-23	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.39	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.005	0.73	0.0	0.04	22.63	0.00	1.891	37.90	0.00	7.3	92.7	0.0	-2.03	2.96	0.90	0.84	—	13861	1314	10	144	54	0	0	logfile
✔	7QDY	13927	2023-04-26	2021-12-01	3.1	2.87	3.15	3.0	0.009	1.11	0.0	0.06	14.48	0.01	1.910	11.71	0.00	5.7	94.2	0.1	-1.41	0.77	0.80	2.42	3.0	0.004	0.72	0.0	0.04	16.09	0.00	2.004	8.27	0.46	9.4	90.6	0.0	-0.48	0.44	0.80	0.86	2.12	22924	2991	5	6	0	0	0	logfile
✔	8H12	34422	2023-04-26	2022-09-30	3.44681	3.52	3.40	3.5	0.006	0.81	0.0	0.06	13.90	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.003	0.57	0.0	0.05	15.44	0.00	2.094	4.94	0.23	3.2	96.8	0.0	-0.79	0.33	0.71	0.85	2.97	24221	3022	9	0	45	0	0	logfile
✔	6JBJ	9791	2023-04-21	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.004	0.77	0.0	0.04	18.34	0.00	2.084	18.07	0.59	8.7	91.3	0.0	-2.08	0.61	0.65	0.82	1.17	9166	1130	4	0	2	0	0	logfile
✔	7LHV	23351	2023-04-21	2021-01-26	2.75	3.33	2.83	3.3	0.007	0.76	0.0	0.04	15.32	0.00	2.299	4.65	0.00	3.5	96.5	0.0	0.97	0.55	0.73	2.12	3.3	0.003	0.52	0.0	0.04	14.10	0.00	2.141	5.52	0.72	3.8	96.2	0.0	1.09	1.32	0.55	0.77	3.19	9094	1150	6	0	8	2	0	logfile
✔	7QD8	13910	2023-04-23	2021-11-26	3.6	3.90	3.66	3.8	0.004	0.74	0.0	0.05	14.49	0.00	2.273	5.28	0.00	2.3	97.7	0.0	-1.83	0.74	0.69	1.54	3.8	0.003	0.59	0.0	0.04	16.23	0.00	2.155	11.10	0.20	3.0	97.0	0.0	0.33	0.49	0.74	0.69	1.21	14086	1730	2	0	0	0	0	logfile
✔	7XZ5	33525	2023-04-24	2022-06-02	3.1	2.85	3.00	3.0	0.020	1.55	81.0	0.21	14.15	0.00	2.103	2.18	0.00	1.7	98.3	0.0	1.35	0.60	0.75	2.79	3.0	0.003	0.53	0.0	0.04	15.61	0.00	2.030	4.36	0.11	3.0	97.0	0.0	0.89	0.63	0.62	0.80	3.00	16456	1052	5	0	1	0	8189	logfile
✔	6T90	10406	2023-04-22	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.40	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.004	0.59	0.0	0.03	26.53	0.00	2.050	6.29	0.40	1.4	98.6	0.0	3.02	2.93	0.86	0.87	2.63	13031	903	19	282	9	0	0	logfile
✔	7XZ6	33526	2023-04-24	2022-06-02	2.8	2.66	2.73	2.8	0.003	0.57	0.0	0.14	12.69	0.00	2.078	5.47	0.00	1.3	98.7	0.0	1.92	0.60	0.75	2.90	2.7	0.003	0.53	0.0	0.04	16.08	0.00	1.961	6.38	1.68	2.9	97.1	0.0	0.54	1.62	0.61	0.81	3.18	16458	1052	5	0	1	1	8192	logfile
✔	7TKM	25974	2023-04-25	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.82	0.0	0.00	5.62	0.00	2.105	12.83	0.00	9.6	90.0	0.3	-0.78	1.55	0.82	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7BCQ	12142	2023-04-25	2020-12-21	3.43	3.61	3.36	3.8	0.012	1.05	0.0	0.15	13.60	0.01	2.098	3.22	0.00	5.5	94.5	0.0	-0.68	0.58	0.73	2.69	3.8	0.003	0.68	0.0	0.15	14.40	0.00	2.037	7.74	0.19	5.2	94.8	0.0	0.77	0.51	0.57	0.77	2.61	20160	1326	6	0	3	0	10299	logfile
✔	7N3P	24143	2023-04-21	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	18.98	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.003	0.57	0.0	0.03	19.82	0.00	2.146	13.31	0.54	2.5	97.5	0.0	1.57	1.14	0.78	0.82	2.32	9055	454	4	259	0	0	0	logfile
✔	7W6M	32329	2023-04-29	2021-12-02	4.7	4.96	4.72	4.7	0.005	0.83	0.0	0.06	13.62	0.00	2.107	9.16	0.00	4.4	95.6	0.0	-0.63	0.85	0.80	—	4.7	0.004	0.74	0.0	0.05	13.62	0.00	2.036	13.13	0.00	6.2	93.8	0.0	-0.91	0.37	0.85	0.82	—	30756	3672	51	0	204	0	0	logfile
✔	7LXD	23570	2023-04-24	2021-03-03	4.11	4.31	—	4.1	0.006	1.30	1.0	0.07	15.45	0.01	2.276	9.39	0.00	2.7	97.3	0.0	-3.73	0.79	0.63	—	4.1	0.003	0.82	0.0	0.05	14.58	0.01	2.037	23.42	0.10	11.1	88.9	0.0	-2.65	1.72	0.80	0.66	—	17456	2135	6	0	1	0	0	logfile

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