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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RU6 | 24698 | 2023-04-20 | 2021-08-16 | 4.4 | 4.33 | 3.79 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.25 | 0.00 | 2.027 | 10.32 | 0.00 | 0.3 | 99.7 | 0.0 | 3.15 | 0.71 | 0.67 | — | 4.2 | 0.002 | 0.50 | 0.0 | 0.03 | 13.30 | 0.00 | 2.118 | 7.19 | 0.34 | 1.9 | 98.1 | 0.0 | 4.08 | 0.78 | 0.74 | 0.70 | — | 5426 | 331 | 2 | 0 | 0 | 0 | 2725 | logfile |
✔ | 7PZR | 13736 | 2023-04-23 | 2021-10-13 | 3.0 | 3.57 | — | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.71 | 0.01 | 2.062 | 11.63 | 0.00 | 1.5 | 98.5 | 0.0 | 3.84 | 0.77 | 0.69 | 1.43 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 16.07 | 0.01 | 2.079 | 21.17 | 1.77 | 2.0 | 98.0 | 0.0 | 1.77 | 2.50 | 0.80 | 0.77 | 0.93 | 7404 | 935 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2023-04-27 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPC | 14117 | 2023-04-21 | 2022-01-03 | 3.44 | 3.64 | 3.38 | 3.7 | 0.003 | 1.07 | 0.0 | 0.04 | 14.77 | 0.00 | 2.199 | 5.74 | 0.00 | 2.5 | 97.5 | 0.0 | 1.61 | 0.59 | 0.79 | 1.03 | 3.7 | 0.003 | 0.54 | 0.0 | 0.03 | 15.30 | 0.00 | 2.115 | 7.87 | 0.00 | 3.1 | 96.9 | 0.0 | 1.53 | 0.28 | 0.58 | 0.80 | 1.35 | 10830 | 654 | 6 | 0 | 4 | 62 | 5540 | logfile |
✔ | 7KAH | 22770 | 2023-04-21 | 2020-10-01 | 3.1 | 3.79 | 3.14 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 12.90 | 0.00 | 2.257 | 4.61 | 0.00 | 3.2 | 96.8 | 0.0 | -1.32 | 0.69 | 0.86 | 2.50 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.160 | 5.69 | 0.18 | 2.2 | 97.8 | 0.0 | 2.04 | 1.27 | 0.69 | 0.87 | 1.94 | 10495 | 1349 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXM | 32184 | 2023-04-29 | 2021-11-12 | 3.6 | 3.96 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 7.69 | 0.00 | 2.159 | 7.97 | 0.00 | 3.9 | 95.9 | 0.2 | -2.41 | 0.49 | 0.54 | 0.82 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 14.30 | 0.00 | 2.086 | 11.95 | 0.24 | 3.5 | 96.5 | 0.0 | -0.04 | 1.68 | 0.58 | 0.73 | 1.22 | 29901 | 3791 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2023-04-23 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.35 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.005 | 0.73 | 0.0 | 0.04 | 22.63 | 0.00 | 1.891 | 37.90 | 0.00 | 7.3 | 92.7 | 0.0 | -2.03 | 2.96 | 0.90 | 0.84 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 7QDY | 13927 | 2023-04-26 | 2021-12-01 | 3.1 | 2.87 | 3.15 | 3.0 | 0.009 | 1.11 | 0.0 | 0.06 | 14.48 | 0.01 | 1.910 | 11.71 | 0.00 | 5.7 | 94.2 | 0.1 | -1.41 | 0.77 | 0.80 | 2.42 | 3.0 | 0.004 | 0.72 | 0.0 | 0.04 | 16.09 | 0.00 | 2.004 | 8.27 | 0.46 | 9.4 | 90.6 | 0.0 | -0.48 | 0.44 | 0.80 | 0.86 | 2.12 | 22924 | 2991 | 5 | 6 | 0 | 0 | 0 | logfile |
✔ | 8H12 | 34422 | 2023-04-26 | 2022-09-30 | 3.44681 | 3.52 | 3.40 | 3.5 | 0.006 | 0.81 | 0.0 | 0.06 | 13.90 | 0.01 | 2.253 | 2.68 | 0.00 | 4.0 | 96.0 | 0.0 | -2.04 | 0.71 | 0.84 | 3.55 | 3.5 | 0.003 | 0.57 | 0.0 | 0.05 | 15.44 | 0.00 | 2.094 | 4.94 | 0.23 | 3.2 | 96.8 | 0.0 | -0.79 | 0.33 | 0.71 | 0.85 | 2.97 | 24221 | 3022 | 9 | 0 | 45 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2023-04-21 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 18.34 | 0.00 | 2.084 | 18.07 | 0.59 | 8.7 | 91.3 | 0.0 | -2.08 | 0.61 | 0.65 | 0.82 | 1.17 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7LHV | 23351 | 2023-04-21 | 2021-01-26 | 2.75 | 3.33 | 2.83 | 3.3 | 0.007 | 0.76 | 0.0 | 0.04 | 15.32 | 0.00 | 2.299 | 4.65 | 0.00 | 3.5 | 96.5 | 0.0 | 0.97 | 0.55 | 0.73 | 2.12 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.10 | 0.00 | 2.141 | 5.52 | 0.72 | 3.8 | 96.2 | 0.0 | 1.09 | 1.32 | 0.55 | 0.77 | 3.19 | 9094 | 1150 | 6 | 0 | 8 | 2 | 0 | logfile |
✔ | 7QD8 | 13910 | 2023-04-23 | 2021-11-26 | 3.6 | 3.90 | 3.66 | 3.8 | 0.004 | 0.74 | 0.0 | 0.05 | 14.49 | 0.00 | 2.273 | 5.28 | 0.00 | 2.3 | 97.7 | 0.0 | -1.83 | 0.74 | 0.69 | 1.54 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.23 | 0.00 | 2.155 | 11.10 | 0.20 | 3.0 | 97.0 | 0.0 | 0.33 | 0.49 | 0.74 | 0.69 | 1.21 | 14086 | 1730 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XZ5 | 33525 | 2023-04-24 | 2022-06-02 | 3.1 | 2.85 | 3.00 | 3.0 | 0.020 | 1.55 | 81.0 | 0.21 | 14.15 | 0.00 | 2.103 | 2.18 | 0.00 | 1.7 | 98.3 | 0.0 | 1.35 | 0.60 | 0.75 | 2.79 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 15.61 | 0.00 | 2.030 | 4.36 | 0.11 | 3.0 | 97.0 | 0.0 | 0.89 | 0.63 | 0.62 | 0.80 | 3.00 | 16456 | 1052 | 5 | 0 | 1 | 0 | 8189 | logfile |
✔ | 6T90 | 10406 | 2023-04-22 | 2019-10-25 | 3.05 | 3.74 | — | 3.3 | 0.022 | 1.52 | 0.0 | 0.09 | 24.61 | 0.01 | 2.459 | 0.40 | 0.00 | 0.3 | 99.7 | 0.0 | 1.02 | 0.84 | 0.81 | 4.34 | 3.3 | 0.004 | 0.59 | 0.0 | 0.03 | 26.53 | 0.00 | 2.050 | 6.29 | 0.40 | 1.4 | 98.6 | 0.0 | 3.02 | 2.93 | 0.86 | 0.87 | 2.63 | 13031 | 903 | 19 | 282 | 9 | 0 | 0 | logfile |
✔ | 7XZ6 | 33526 | 2023-04-24 | 2022-06-02 | 2.8 | 2.66 | 2.73 | 2.8 | 0.003 | 0.57 | 0.0 | 0.14 | 12.69 | 0.00 | 2.078 | 5.47 | 0.00 | 1.3 | 98.7 | 0.0 | 1.92 | 0.60 | 0.75 | 2.90 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 16.08 | 0.00 | 1.961 | 6.38 | 1.68 | 2.9 | 97.1 | 0.0 | 0.54 | 1.62 | 0.61 | 0.81 | 3.18 | 16458 | 1052 | 5 | 0 | 1 | 1 | 8192 | logfile |
✔ | 7TKM | 25974 | 2023-04-25 | 2022-01-17 | 4.5 | 7.58 | 4.88 | 4.3 | 0.019 | 2.22 | 0.0 | 0.00 | 6.78 | 0.01 | 2.385 | 0.12 | 0.00 | 4.3 | 94.2 | 1.5 | -0.44 | 0.59 | 0.59 | — | 4.3 | 0.004 | 0.82 | 0.0 | 0.00 | 5.62 | 0.00 | 2.105 | 12.83 | 0.00 | 9.6 | 90.0 | 0.3 | -0.78 | 1.55 | 0.82 | 0.81 | — | 20227 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BCQ | 12142 | 2023-04-25 | 2020-12-21 | 3.43 | 3.61 | 3.36 | 3.8 | 0.012 | 1.05 | 0.0 | 0.15 | 13.60 | 0.01 | 2.098 | 3.22 | 0.00 | 5.5 | 94.5 | 0.0 | -0.68 | 0.58 | 0.73 | 2.69 | 3.8 | 0.003 | 0.68 | 0.0 | 0.15 | 14.40 | 0.00 | 2.037 | 7.74 | 0.19 | 5.2 | 94.8 | 0.0 | 0.77 | 0.51 | 0.57 | 0.77 | 2.61 | 20160 | 1326 | 6 | 0 | 3 | 0 | 10299 | logfile |
✔ | 7N3P | 24143 | 2023-04-21 | 2021-06-01 | 3.65 | 3.97 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 18.98 | 0.00 | 2.224 | 8.05 | 0.00 | 2.2 | 97.8 | 0.0 | 1.68 | 0.77 | 0.79 | 2.64 | 3.9 | 0.003 | 0.57 | 0.0 | 0.03 | 19.82 | 0.00 | 2.146 | 13.31 | 0.54 | 2.5 | 97.5 | 0.0 | 1.57 | 1.14 | 0.78 | 0.82 | 2.32 | 9055 | 454 | 4 | 259 | 0 | 0 | 0 | logfile |
✔ | 7W6M | 32329 | 2023-04-29 | 2021-12-02 | 4.7 | 4.96 | 4.72 | 4.7 | 0.005 | 0.83 | 0.0 | 0.06 | 13.62 | 0.00 | 2.107 | 9.16 | 0.00 | 4.4 | 95.6 | 0.0 | -0.63 | 0.85 | 0.80 | — | 4.7 | 0.004 | 0.74 | 0.0 | 0.05 | 13.62 | 0.00 | 2.036 | 13.13 | 0.00 | 6.2 | 93.8 | 0.0 | -0.91 | 0.37 | 0.85 | 0.82 | — | 30756 | 3672 | 51 | 0 | 204 | 0 | 0 | logfile |
✔ | 7LXD | 23570 | 2023-04-24 | 2021-03-03 | 4.11 | 4.31 | — | 4.1 | 0.006 | 1.30 | 1.0 | 0.07 | 15.45 | 0.01 | 2.276 | 9.39 | 0.00 | 2.7 | 97.3 | 0.0 | -3.73 | 0.79 | 0.63 | — | 4.1 | 0.003 | 0.82 | 0.0 | 0.05 | 14.58 | 0.01 | 2.037 | 23.42 | 0.10 | 11.1 | 88.9 | 0.0 | -2.65 | 1.72 | 0.80 | 0.66 | — | 17456 | 2135 | 6 | 0 | 1 | 0 | 0 | logfile |