Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F6V	31482	2023-04-20	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.65	0.0	0.03	17.58	0.00	2.249	9.40	0.18	4.4	95.6	0.0	4.28	0.84	0.60	0.77	0.75	5314	626	4	0	2	0	0	logfile
✔	7URE	26710	2023-04-20	2022-04-21	3.19	3.51	3.25	3.4	0.017	0.78	0.0	0.78	14.25	0.00	2.118	9.65	0.00	5.7	94.3	0.0	-2.27	0.60	0.85	3.70	3.4	0.002	1.07	0.0	0.12	15.47	0.00	2.071	5.85	0.69	3.8	96.2	0.0	0.79	0.93	0.59	0.85	3.00	5450	678	6	0	3	0	0	logfile
✔	7RXC	24728	2023-04-21	2021-08-22	3.2	2.84	—	3.2	0.006	0.77	0.0	0.13	14.32	0.01	2.089	9.58	0.00	2.3	97.7	0.0	1.18	0.66	0.79	2.95	3.2	0.005	0.61	0.0	0.04	15.95	0.00	2.147	9.90	0.50	3.0	97.0	0.0	0.93	0.36	0.67	0.84	2.67	9360	1178	7	0	6	0	0	logfile
✔	6VN7	21249	2023-04-20	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.005	0.65	0.0	0.04	14.31	0.00	2.106	8.15	0.44	2.3	97.7	0.0	0.87	0.75	0.56	0.74	2.05	8620	1052	7	0	10	0	0	logfile
✔	7CR7	30448	2023-04-23	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.63	0.00	1.825	92.66	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.90	0.0	0.04	17.53	0.00	2.011	22.09	0.59	4.2	95.8	0.0	-0.01	1.52	0.63	0.70	0.45	16136	1988	12	0	4	0	0	logfile
✔	6oCE	20017	2023-04-22	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.76	0.0	0.04	12.52	0.01	2.176	12.97	0.00	12.3	87.7	0.0	-2.82	1.19	0.46	0.63	—	11228	1378	2	0	0	0	0	logfile
✔	8CSZ	26976	2023-04-21	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.57	0.0	0.03	19.22	0.00	1.980	9.85	0.24	4.9	95.1	0.0	-0.14	1.12	0.84	0.88	3.57	8948	494	5	236	3	0	0	logfile
✔	6ZY7	11553	2023-04-25	2020-07-30	4.64	8.26	4.84	4.6	0.009	1.01	0.0	0.08	12.28	0.01	2.218	6.54	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.002	0.57	0.0	0.04	13.75	0.00	2.166	14.32	0.00	2.3	97.7	0.0	-0.31	2.28	0.92	0.71	—	19979	2319	10	60	4	0	0	logfile
✔	7KVC	23046	2023-04-26	2020-11-27	4.7	4.90	—	4.8	0.005	0.84	0.0	0.05	13.91	0.00	2.224	33.61	0.00	10.7	89.3	0.0	-2.46	0.82	0.81	—	4.8	0.004	0.76	0.0	0.04	14.05	0.01	2.222	24.53	0.00	5.6	94.4	0.0	-0.15	0.55	0.81	0.79	—	21920	2660	10	0	0	0	0	logfile
✔	7TRY	26103	2023-04-20	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.004	0.79	0.0	0.05	14.01	0.00	2.080	16.89	0.74	3.3	96.7	0.0	1.27	2.53	0.69	0.79	0.74	8340	1211	6	0	0	0	0	logfile
✔	6T9o	10419	2023-04-24	2019-10-28	3.39	3.51	3.38	3.5	0.010	1.01	0.0	0.07	10.82	0.01	2.200	3.72	0.00	6.7	92.7	0.6	-3.77	0.66	0.86	3.99	3.5	0.003	0.52	0.0	0.04	15.31	0.00	2.082	6.65	0.36	2.3	97.5	0.2	0.74	0.56	0.68	0.89	2.90	16481	1924	12	0	41	0	0	logfile
✔	7WKW	32570	2023-04-22	2022-01-11	2.62	2.71	—	2.8	0.003	0.99	0.0	0.04	12.85	0.00	1.991	5.89	0.00	1.9	98.1	0.0	1.70	0.47	0.63	1.09	2.7	0.002	0.57	0.0	0.04	15.64	0.00	1.923	4.64	1.10	1.6	98.4	0.0	1.88	0.60	0.60	0.82	2.26	12056	754	4	0	2	0	6138	logfile
✘	7SWP	25478	2023-04-20	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile
✔	8F7Q	28907	2023-04-22	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.66	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✘	7UAE	26422	2023-04-20	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	12.76	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4513	535	7	0	18	0	0	logfile
✔	3JAE	6345	2023-04-22	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✘	7oE7	12861	2023-04-22	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✔	6ZQA	11357	2023-04-26	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile
✔	8EQ4	28535	2023-04-20	2022-10-07	2.71	3.56	2.72	3.3	0.006	0.74	0.0	0.05	12.21	0.02	2.233	7.56	0.00	1.1	98.9	0.0	1.28	0.68	0.87	4.24	3.3	0.005	0.63	0.0	0.05	14.50	0.00	2.271	7.70	1.44	1.8	98.2	0.0	1.32	1.29	0.68	0.87	4.36	6903	849	6	0	15	0	0	logfile
✔	7RYP	24744	2023-04-22	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.6	0.002	0.60	0.0	0.04	12.79	0.00	1.890	10.59	0.00	9.8	90.1	0.1	-0.44	1.01	0.77	0.71	—	11293	725	2	0	0	0	5599	logfile

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