Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MGV	9112	2022-12-12	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	3.09	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.62	0.0	0.04	13.83	0.00	1.992	7.22	0.28	3.8	96.2	0.0	1.46	2.11	0.67	0.84	2.96	10150	1268	2	0	0	0	0	logfile
✔	6N1i	8903	2022-12-12	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.003	0.78	0.0	0.04	17.63	0.00	2.236	15.98	0.87	4.5	95.5	0.0	-0.33	2.36	0.57	0.82	1.93	11136	1360	16	0	0	0	0	logfile
✔	6GTD	0062	2022-12-11	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6NZU	0560	2022-12-14	2019-02-14	3.2	3.33	3.22	3.3	0.013	0.89	0.0	0.06	14.62	0.01	2.057	2.30	0.00	7.3	92.7	0.0	-5.92	0.71	0.84	3.98	3.3	0.004	0.66	0.0	0.05	16.27	0.00	2.238	6.90	0.07	5.0	95.0	0.0	-1.43	0.57	0.70	0.84	3.11	12570	1588	16	0	6	0	0	logfile
✔	6i3N	4405	2022-12-12	2018-11-06	3.1	3.19	2.96	3.2	0.007	1.05	0.0	0.05	11.33	0.01	2.410	3.63	0.00	7.9	92.1	0.0	-5.28	0.58	0.82	1.77	3.2	0.006	0.70	0.0	0.04	17.04	0.00	2.156	7.95	0.71	5.6	94.4	0.0	1.75	1.33	0.60	0.86	0.96	10660	1339	13	0	0	0	0	logfile
✔	6C9K	7437	2022-12-20	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	1.65	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.004	0.62	0.0	0.04	14.84	0.00	2.148	18.74	0.15	2.1	97.9	0.0	3.14	0.89	0.81	0.67	-0.17	37632	4923	24	0	0	0	0	logfile
✔	6CAA	7441	2022-12-11	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.86	0.0	0.04	15.83	0.00	2.180	13.35	0.12	10.6	89.4	0.0	-1.13	2.15	0.65	0.79	1.41	7508	954	2	0	0	0	0	logfile
✔	6NF6	9361	2022-12-11	2018-12-18	3.32	3.42	—	3.4	0.007	0.98	0.0	0.06	15.65	0.01	2.309	4.98	0.00	4.5	95.2	0.3	-2.74	0.54	0.79	2.76	3.4	0.003	0.60	0.0	0.04	16.56	0.00	2.131	12.04	0.41	4.0	96.0	0.0	2.48	0.56	0.55	0.81	2.45	6598	822	4	0	2	0	0	logfile
✔	5iRZ	8118	2022-12-13	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.22	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	16.32	0.00	2.184	9.10	0.64	6.7	93.3	0.0	0.77	0.68	0.66	0.84	3.08	12504	1576	8	0	24	0	0	logfile
✔	6T9N	10418	2022-12-13	2019-10-28	2.96	3.07	2.95	3.0	0.012	1.15	0.0	0.07	11.50	0.01	2.216	3.95	0.00	3.2	96.4	0.4	-3.35	0.71	0.88	4.95	3.1	0.003	0.60	0.0	0.04	15.34	0.00	2.149	9.29	1.01	1.5	98.3	0.2	1.13	1.26	0.69	0.90	4.48	16917	1920	12	0	53	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6JBJ	9791	2022-12-12	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.75	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.003	0.73	0.0	0.04	18.18	0.00	2.091	17.10	0.49	7.6	92.4	0.0	-1.82	1.20	0.64	0.82	1.09	9166	1130	4	0	2	0	0	logfile
✔	6KKU	0703	2022-12-12	2019-07-27	3.5	3.59	—	3.6	0.009	1.06	0.0	0.06	10.84	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.66	0.0	0.04	14.61	0.00	2.191	6.88	0.00	2.3	97.7	0.0	1.09	1.29	0.61	0.82	1.71	8412	1074	12	0	20	0	0	logfile
✔	6R4R	4727	2022-12-11	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile
✔	6T61	10381	2022-12-16	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.003	0.76	0.0	0.04	17.80	0.00	2.091	12.21	0.48	6.0	94.0	0.0	0.82	1.64	0.51	0.78	0.72	30978	3906	18	0	0	0	0	logfile
✔	6R7X	4746	2022-12-12	2019-03-29	3.47	3.59	3.33	3.6	0.005	0.79	0.0	0.04	13.63	0.01	2.289	3.25	0.00	2.4	97.4	0.2	-3.00	0.65	0.86	3.62	3.6	0.005	0.58	0.0	0.04	15.18	0.00	2.223	7.05	0.19	2.9	97.1	0.0	1.40	0.35	0.64	0.89	3.32	10630	1258	4	0	28	0	0	logfile
✔	6XWo	10633	2022-12-12	2020-01-24	3.39	4.01	—	3.8	0.006	0.69	0.0	0.04	13.23	0.01	2.167	9.83	0.00	6.0	94.0	0.0	-3.53	0.74	0.82	1.64	3.8	0.004	0.67	0.0	0.04	14.92	0.00	2.197	9.83	0.00	3.5	96.5	0.0	0.87	0.51	0.73	0.86	1.15	9555	1281	3	0	0	0	0	logfile
✔	6FN4	4282	2022-12-12	2018-02-02	4.14	4.24	—	4.2	0.005	0.80	0.0	0.05	9.96	0.01	2.096	8.91	0.00	7.5	91.3	1.2	-2.94	0.68	0.75	—	4.2	0.003	0.71	0.0	0.04	12.44	0.00	2.166	9.85	0.00	4.1	95.8	0.1	-0.10	1.65	0.71	0.76	—	12702	1626	4	0	4	0	0	logfile
✔	6SP2	10279	2022-12-14	2019-08-30	3.33	3.92	3.50	3.8	0.006	0.85	0.0	0.05	15.17	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.003	0.66	0.0	0.04	14.85	0.00	2.207	5.66	0.21	3.8	96.2	0.0	2.75	1.49	0.63	0.80	1.58	18498	2190	12	0	24	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile

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