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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MGV | 9112 | 2022-12-12 | 2018-09-15 | 3.1 | 3.21 | 3.10 | 3.2 | 0.018 | 1.44 | 0.0 | 0.08 | 9.73 | 0.01 | 2.082 | 3.09 | 0.00 | 3.4 | 96.5 | 0.2 | -0.38 | 0.70 | 0.83 | 4.59 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 13.83 | 0.00 | 1.992 | 7.22 | 0.28 | 3.8 | 96.2 | 0.0 | 1.46 | 2.11 | 0.67 | 0.84 | 2.96 | 10150 | 1268 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1i | 8903 | 2022-12-12 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | 3.6 | 0.003 | 0.78 | 0.0 | 0.04 | 17.63 | 0.00 | 2.236 | 15.98 | 0.87 | 4.5 | 95.5 | 0.0 | -0.33 | 2.36 | 0.57 | 0.82 | 1.93 | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2022-12-11 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.06 | 20.44 | 0.00 | 1.993 | 20.74 | 0.00 | 19.9 | 80.1 | 0.0 | -3.31 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2022-12-14 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.013 | 0.89 | 0.0 | 0.06 | 14.62 | 0.01 | 2.057 | 2.30 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 16.27 | 0.00 | 2.238 | 6.90 | 0.07 | 5.0 | 95.0 | 0.0 | -1.43 | 0.57 | 0.70 | 0.84 | 3.11 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 6i3N | 4405 | 2022-12-12 | 2018-11-06 | 3.1 | 3.19 | 2.96 | 3.2 | 0.007 | 1.05 | 0.0 | 0.05 | 11.33 | 0.01 | 2.410 | 3.63 | 0.00 | 7.9 | 92.1 | 0.0 | -5.28 | 0.58 | 0.82 | 1.77 | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 17.04 | 0.00 | 2.156 | 7.95 | 0.71 | 5.6 | 94.4 | 0.0 | 1.75 | 1.33 | 0.60 | 0.86 | 0.96 | 10660 | 1339 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2022-12-20 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 1.65 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.84 | 0.00 | 2.148 | 18.74 | 0.15 | 2.1 | 97.9 | 0.0 | 3.14 | 0.89 | 0.81 | 0.67 | -0.17 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2022-12-11 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.003 | 0.86 | 0.0 | 0.04 | 15.83 | 0.00 | 2.180 | 13.35 | 0.12 | 10.6 | 89.4 | 0.0 | -1.13 | 2.15 | 0.65 | 0.79 | 1.41 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NF6 | 9361 | 2022-12-11 | 2018-12-18 | 3.32 | 3.42 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 15.65 | 0.01 | 2.309 | 4.98 | 0.00 | 4.5 | 95.2 | 0.3 | -2.74 | 0.54 | 0.79 | 2.76 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 16.56 | 0.00 | 2.131 | 12.04 | 0.41 | 4.0 | 96.0 | 0.0 | 2.48 | 0.56 | 0.55 | 0.81 | 2.45 | 6598 | 822 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5iRZ | 8118 | 2022-12-13 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 16.22 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.32 | 0.00 | 2.184 | 9.10 | 0.64 | 6.7 | 93.3 | 0.0 | 0.77 | 0.68 | 0.66 | 0.84 | 3.08 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 6T9N | 10418 | 2022-12-13 | 2019-10-28 | 2.96 | 3.07 | 2.95 | 3.0 | 0.012 | 1.15 | 0.0 | 0.07 | 11.50 | 0.01 | 2.216 | 3.95 | 0.00 | 3.2 | 96.4 | 0.4 | -3.35 | 0.71 | 0.88 | 4.95 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.34 | 0.00 | 2.149 | 9.29 | 1.01 | 1.5 | 98.3 | 0.2 | 1.13 | 1.26 | 0.69 | 0.90 | 4.48 | 16917 | 1920 | 12 | 0 | 53 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-12-11 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2022-12-12 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.75 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 18.18 | 0.00 | 2.091 | 17.10 | 0.49 | 7.6 | 92.4 | 0.0 | -1.82 | 1.20 | 0.64 | 0.82 | 1.09 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KKU | 0703 | 2022-12-12 | 2019-07-27 | 3.5 | 3.59 | — | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 10.84 | 0.01 | 2.243 | 2.64 | 0.00 | 4.3 | 95.7 | 0.0 | -3.36 | 0.60 | 0.82 | 3.09 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.61 | 0.00 | 2.191 | 6.88 | 0.00 | 2.3 | 97.7 | 0.0 | 1.09 | 1.29 | 0.61 | 0.82 | 1.71 | 8412 | 1074 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2022-12-11 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.7 | 0.005 | 0.82 | 0.0 | 0.05 | 16.51 | 0.00 | 2.111 | 15.74 | 2.27 | 9.1 | 90.9 | 0.0 | -4.78 | 3.89 | 0.31 | 0.67 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T61 | 10381 | 2022-12-16 | 2019-10-17 | 3.7 | 3.68 | — | 3.6 | 0.006 | 0.93 | 0.0 | 0.05 | 15.61 | 0.01 | 0.321 | 8.35 | 0.00 | 8.1 | 91.9 | 0.0 | -3.35 | 0.50 | 0.77 | 1.47 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.80 | 0.00 | 2.091 | 12.21 | 0.48 | 6.0 | 94.0 | 0.0 | 0.82 | 1.64 | 0.51 | 0.78 | 0.72 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R7X | 4746 | 2022-12-12 | 2019-03-29 | 3.47 | 3.59 | 3.33 | 3.6 | 0.005 | 0.79 | 0.0 | 0.04 | 13.63 | 0.01 | 2.289 | 3.25 | 0.00 | 2.4 | 97.4 | 0.2 | -3.00 | 0.65 | 0.86 | 3.62 | 3.6 | 0.005 | 0.58 | 0.0 | 0.04 | 15.18 | 0.00 | 2.223 | 7.05 | 0.19 | 2.9 | 97.1 | 0.0 | 1.40 | 0.35 | 0.64 | 0.89 | 3.32 | 10630 | 1258 | 4 | 0 | 28 | 0 | 0 | logfile |
✔ | 6XWo | 10633 | 2022-12-12 | 2020-01-24 | 3.39 | 4.01 | — | 3.8 | 0.006 | 0.69 | 0.0 | 0.04 | 13.23 | 0.01 | 2.167 | 9.83 | 0.00 | 6.0 | 94.0 | 0.0 | -3.53 | 0.74 | 0.82 | 1.64 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 14.92 | 0.00 | 2.197 | 9.83 | 0.00 | 3.5 | 96.5 | 0.0 | 0.87 | 0.51 | 0.73 | 0.86 | 1.15 | 9555 | 1281 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FN4 | 4282 | 2022-12-12 | 2018-02-02 | 4.14 | 4.24 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 9.96 | 0.01 | 2.096 | 8.91 | 0.00 | 7.5 | 91.3 | 1.2 | -2.94 | 0.68 | 0.75 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 12.44 | 0.00 | 2.166 | 9.85 | 0.00 | 4.1 | 95.8 | 0.1 | -0.10 | 1.65 | 0.71 | 0.76 | — | 12702 | 1626 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SP2 | 10279 | 2022-12-14 | 2019-08-30 | 3.33 | 3.92 | 3.50 | 3.8 | 0.006 | 0.85 | 0.0 | 0.05 | 15.17 | 0.00 | 1.590 | 8.11 | 0.00 | 4.7 | 95.3 | 0.0 | -0.56 | 0.49 | 0.67 | 2.32 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 14.85 | 0.00 | 2.207 | 5.66 | 0.21 | 3.8 | 96.2 | 0.0 | 2.75 | 1.49 | 0.63 | 0.80 | 1.58 | 18498 | 2190 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |