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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6KoU | 0740 | 2024-03-12 | 2019-08-13 | 2.43 | 3.57 | — | 3.0 | 0.004 | 0.67 | 1.0 | 0.13 | 11.88 | 0.00 | 2.006 | 4.07 | 0.00 | 3.0 | 97.0 | 0.0 | -4.12 | 0.85 | 0.88 | 4.03 | 3.1 | 0.004 | 0.74 | 2.0 | 0.13 | 13.97 | 0.00 | 2.064 | 6.49 | 0.34 | 4.0 | 96.0 | 0.0 | 0.83 | 1.07 | 0.85 | 0.89 | 3.90 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 7L8C | 23229 | 2024-03-16 | 2020-12-31 | 3.4 | 3.54 | 3.26 | 3.5 | 0.026 | 1.74 | 5.0 | 0.16 | 12.31 | 0.01 | 2.049 | 1.27 | 0.00 | 1.7 | 98.3 | 0.0 | 0.69 | 0.73 | 0.87 | 4.33 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 12.45 | 0.00 | 2.178 | 4.83 | 1.20 | 1.9 | 98.1 | 0.0 | 0.05 | 1.21 | 0.71 | 0.86 | 3.11 | 15963 | 1691 | 56 | 0 | 331 | 0 | 0 | logfile |
✔ | 6KPJ | 0748 | 2024-03-12 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.94 | 0.0 | 0.06 | 13.40 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | 3.3 | 0.006 | 0.75 | 2.0 | 0.13 | 14.16 | 0.00 | 1.099 | 6.34 | 0.72 | 3.1 | 96.9 | 0.0 | 0.73 | 0.68 | 0.85 | 0.87 | 3.67 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 7oLA | 12975 | 2024-03-18 | 2021-05-19 | 3.3 | 3.85 | 3.21 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 16.47 | 0.00 | 2.023 | 7.61 | 0.00 | 2.7 | 97.3 | 0.0 | 1.22 | 0.88 | 0.85 | 2.96 | 3.4 | 0.003 | 0.49 | 0.0 | 0.04 | 16.07 | 0.00 | 1.943 | 8.73 | 0.78 | 2.6 | 97.4 | 0.0 | 1.10 | 0.87 | 0.88 | 0.89 | 2.95 | 19719 | 2394 | 10 | 0 | 7 | 0 | 0 | logfile |
✔ | 7L8U | 23237 | 2024-03-16 | 2021-01-01 | 4.5 | 4.63 | 4.35 | 4.5 | 0.021 | 1.77 | 2.0 | 0.14 | 12.08 | 0.02 | 2.199 | 2.59 | 0.00 | 2.9 | 97.1 | 0.0 | 0.24 | 0.73 | 0.78 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 12.41 | 0.00 | 2.177 | 11.68 | 0.07 | 3.8 | 96.2 | 0.0 | -0.85 | 0.97 | 0.73 | 0.81 | — | 15475 | 1675 | 25 | 0 | 300 | 0 | 0 | logfile |
✔ | 7L8T | 23236 | 2024-03-17 | 2020-12-31 | 3.7 | 3.86 | 3.60 | 3.8 | 0.022 | 1.70 | 2.0 | 0.14 | 11.19 | 0.01 | 2.311 | 1.59 | 0.00 | 1.7 | 98.3 | 0.0 | 0.90 | 0.72 | 0.84 | 3.25 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 13.52 | 0.00 | 2.148 | 7.93 | 3.05 | 3.3 | 96.6 | 0.1 | 0.14 | 1.27 | 0.71 | 0.84 | 2.26 | 16337 | 1776 | 26 | 0 | 306 | 0 | 0 | logfile |
✔ | 7T67 | 25711 | 2024-03-19 | 2021-12-13 | 3.0 | 4.53 | 3.13 | 3.0 | 0.004 | 0.76 | 0.0 | 0.05 | 13.33 | 0.01 | 2.074 | 5.55 | 0.00 | 2.8 | 97.2 | 0.0 | -0.16 | 0.85 | 0.80 | 2.60 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 14.20 | 0.00 | 2.144 | 8.03 | 0.41 | 2.9 | 97.1 | 0.0 | 0.45 | 0.49 | 0.89 | 0.86 | 2.37 | 24753 | 3075 | 9 | 0 | 51 | 0 | 0 | logfile |
✔ | 7NAS | 12246 | 2024-03-22 | 2021-01-25 | 3.31 | 4.38 | 7.71 | 2.7 | 0.009 | 0.80 | 3.0 | 0.05 | 23.49 | 0.01 | 1.629 | 25.97 | 0.00 | 8.1 | 91.9 | 0.0 | -3.73 | 0.90 | 0.90 | 1.47 | 2.7 | 0.004 | 0.64 | 0.0 | 0.03 | 23.11 | 0.00 | 1.835 | 21.66 | 4.50 | 4.8 | 95.2 | 0.0 | -0.94 | 0.57 | 0.90 | 0.90 | 1.19 | 32390 | 1454 | 15 | 974 | 43 | 0 | 0 | logfile |
✔ | 7AF8 | 11756 | 2024-03-17 | 2020-09-19 | 2.75 | 3.17 | 2.81 | 2.9 | 0.006 | 0.63 | 4.0 | 0.04 | 21.24 | 0.02 | 2.002 | 6.53 | 0.00 | 3.6 | 96.4 | 0.0 | -0.93 | 0.84 | 0.87 | 2.54 | 2.9 | 0.005 | 0.71 | 0.0 | 0.04 | 21.58 | 0.01 | 1.877 | 10.55 | 3.15 | 4.7 | 95.2 | 0.1 | 0.95 | 0.52 | 0.86 | 0.90 | 2.32 | 18565 | 1109 | 11 | 456 | 52 | 0 | 0 | logfile |
✔ | 7Boi | 12244 | 2024-03-23 | 2021-01-25 | 2.98 | 3.76 | 2.97 | 2.9 | 0.008 | 0.76 | 3.0 | 0.05 | 22.92 | 0.02 | 1.934 | 16.29 | 0.00 | 3.6 | 96.4 | 0.0 | -1.74 | 0.89 | 0.91 | 1.58 | 2.9 | 0.006 | 0.73 | 0.0 | 0.04 | 22.69 | 0.01 | 1.880 | 17.43 | 4.71 | 4.1 | 95.9 | 0.0 | -0.13 | 0.49 | 0.89 | 0.92 | 1.61 | 35970 | 1617 | 16 | 1078 | 74 | 0 | 0 | logfile |
✔ | 7YR0 | 34041 | 2024-03-10 | 2022-08-08 | 3.98 | 4.16 | 3.84 | 4.1 | 0.003 | 0.68 | 0.0 | 0.05 | 15.97 | 0.00 | 2.164 | 11.64 | 0.00 | 8.3 | 91.4 | 0.2 | -1.76 | 0.64 | 0.77 | 2.12 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 15.39 | 0.00 | 2.232 | 12.69 | 3.65 | 8.8 | 91.0 | 0.2 | -1.73 | 0.41 | 0.64 | 0.78 | 1.70 | 3383 | 427 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7MDU | 23780 | 2024-03-11 | 2021-04-06 | 3.3 | 3.35 | 3.19 | 3.3 | 0.023 | 1.76 | 2.0 | 0.14 | 10.79 | 0.01 | 2.302 | 1.10 | 0.00 | 2.1 | 97.9 | 0.0 | 0.65 | 0.51 | 0.86 | 4.32 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 13.59 | 0.00 | 2.150 | 7.39 | 3.41 | 3.4 | 96.6 | 0.0 | 0.01 | 0.73 | 0.51 | 0.88 | 3.21 | 8332 | 1018 | 17 | 0 | 33 | 0 | 0 | logfile |
✔ | 7To3 | 26028 | 2024-03-16 | 2022-01-22 | 2.74 | 3.49 | 2.83 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 12.12 | 0.00 | 2.062 | 3.20 | 0.00 | 1.9 | 98.1 | 0.0 | 0.85 | 0.83 | 0.85 | 3.77 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.07 | 0.00 | 1.087 | 4.40 | 0.90 | 1.7 | 98.3 | 0.0 | 0.84 | 1.33 | 0.82 | 0.85 | 3.93 | 14764 | 1850 | 6 | 0 | 10 | 0 | 0 | logfile |
✔ | 7L86 | 23223 | 2024-03-16 | 2020-12-31 | 3.4 | 3.54 | 3.36 | 3.5 | 0.023 | 1.70 | 0.0 | 0.14 | 10.85 | 0.02 | 2.361 | 1.29 | 0.00 | 1.5 | 98.5 | 0.0 | 0.96 | 0.73 | 0.84 | 4.17 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 12.84 | 0.00 | 2.186 | 5.91 | 1.33 | 1.4 | 98.6 | 0.0 | 0.28 | 1.21 | 0.72 | 0.85 | 3.15 | 15802 | 1686 | 47 | 0 | 323 | 0 | 0 | logfile |
✔ | 7SGF | 25109 | 2024-03-15 | 2021-10-05 | 4.41 | 4.60 | 4.16 | 4.4 | 0.022 | 2.04 | 0.0 | 0.15 | 17.98 | 0.01 | 2.354 | 1.42 | 0.00 | 1.9 | 98.1 | 0.0 | -0.03 | 0.77 | 0.70 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.05 | 12.67 | 0.00 | 2.124 | 22.60 | 0.00 | 8.7 | 91.3 | 0.0 | -1.80 | 1.03 | 0.79 | 0.74 | — | 12078 | 1641 | 42 | 0 | 87 | 0 | 0 | logfile |
✔ | 7L8B | 23228 | 2024-03-16 | 2020-12-31 | 3.7 | 3.83 | 3.64 | 3.8 | 0.022 | 1.72 | 2.0 | 0.15 | 11.18 | 0.02 | 1.218 | 2.26 | 0.00 | 2.3 | 97.7 | 0.0 | 1.11 | 0.70 | 0.83 | 3.74 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 13.38 | 0.00 | 2.213 | 6.37 | 1.74 | 2.6 | 97.4 | 0.0 | -0.24 | 1.26 | 0.69 | 0.83 | 2.92 | 15704 | 1682 | 42 | 0 | 320 | 0 | 0 | logfile |
✔ | 7UVK | 26812 | 2024-03-15 | 2022-05-02 | 3.28 | 3.22 | 3.00 | 3.3 | 0.005 | 0.74 | 0.0 | 0.05 | 13.60 | 0.00 | 2.168 | 11.01 | 0.00 | 9.0 | 91.0 | 0.0 | -3.16 | 0.57 | 0.78 | 2.35 | 3.2 | 0.006 | 0.74 | 0.0 | 0.05 | 16.43 | 0.00 | 2.066 | 12.42 | 3.75 | 10.4 | 89.6 | 0.0 | -2.42 | 1.08 | 0.71 | 0.88 | 2.77 | 10350 | 1295 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L89 | 23226 | 2024-03-16 | 2020-12-31 | 3.8 | 4.01 | 3.20 | 3.8 | 0.023 | 1.76 | 1.0 | 0.15 | 10.67 | 0.02 | 2.051 | 1.96 | 0.00 | 1.6 | 98.4 | 0.0 | 0.80 | 0.82 | 0.85 | 3.71 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 11.82 | 0.00 | 2.238 | 5.35 | 0.87 | 2.4 | 97.6 | 0.0 | 0.51 | 1.20 | 0.82 | 0.87 | 3.37 | 15679 | 1677 | 51 | 0 | 311 | 0 | 0 | logfile |
✘ | 7o4K | 12721 | 2024-03-22 | 2021-04-06 | 3.6 | 3.32 | 3.45 | 3.2 | 0.002 | 0.46 | 0.0 | 0.04 | 14.04 | 0.00 | 2.001 | 3.39 | 0.00 | 2.0 | 98.0 | 0.0 | 1.05 | 0.64 | 0.72 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34264 | 4216 | 25 | 20 | 14 | 0 | 0 | logfile |
✔ | 7SQG | 25384 | 2024-03-11 | 2021-11-05 | 2.6 | 2.14 | — | 1.9 | 0.004 | 0.60 | 0.0 | 0.05 | 17.27 | 0.00 | 2.423 | 3.35 | 0.00 | 3.0 | 97.0 | 0.0 | 1.39 | 0.75 | 0.77 | 3.39 | 1.8 | 0.004 | 0.57 | 0.0 | 0.04 | 16.78 | 0.00 | 2.071 | 6.78 | 1.59 | 3.5 | 96.5 | 0.0 | 1.90 | 1.24 | 0.81 | 0.83 | 3.82 | 6630 | 810 | 6 | 0 | 12 | 0 | 0 | logfile |