Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UL3	26590	2023-07-03	2022-04-03	3.0	3.50	2.97	3.5	0.007	0.88	2.0	0.05	11.43	0.01	2.211	5.26	0.00	2.9	97.1	0.0	1.41	0.51	0.56	1.63	3.5	0.003	0.61	0.0	0.04	13.46	0.00	2.288	5.17	2.45	2.5	97.5	0.0	0.86	0.64	0.55	0.73	2.00	5484	767	5	0	1	0	0	logfile
✔	7Y63	33632	2023-07-05	2022-06-18	3.16	3.52	3.25	3.4	0.006	0.70	0.0	0.05	14.64	0.01	2.214	10.48	0.00	6.0	94.0	0.0	-2.24	0.69	0.82	2.54	3.4	0.003	0.62	0.0	0.04	16.37	0.00	2.189	8.50	0.09	4.9	95.1	0.0	-0.34	1.21	0.67	0.83	2.49	9924	1238	8	0	16	0	0	logfile
✔	7RU8	24699	2023-07-03	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.44	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.003	0.76	0.0	0.04	14.71	0.00	2.128	13.07	0.29	8.1	91.9	0.0	-1.30	1.48	0.78	0.75	1.12	3198	405	5	0	3	0	0	logfile
✔	7TAC	25769	2023-07-06	2021-12-20	3.6	3.94	—	3.9	0.004	0.86	0.0	0.05	14.71	0.01	2.149	12.22	0.00	2.3	97.7	0.0	0.94	0.66	0.69	1.31	3.9	0.004	0.68	0.0	0.04	16.90	0.00	2.203	9.77	0.49	2.9	97.1	0.0	2.72	0.63	0.67	0.71	0.94	11842	1526	12	0	6	0	0	logfile
✔	8DXN	27770	2023-07-08	2022-08-02	3.4	3.71	3.47	3.7	0.003	0.55	0.0	0.04	15.09	0.00	2.166	5.09	0.00	7.1	92.9	0.0	0.69	0.70	0.78	2.04	3.7	0.003	0.58	0.0	0.04	17.09	0.00	2.171	6.33	0.57	6.4	93.6	0.0	1.15	0.42	0.64	0.80	1.34	17499	2101	7	0	0	0	0	logfile
✔	7BoH	12243	2023-07-20	2021-01-25	2.82	3.09	2.90	2.8	0.006	0.62	4.0	0.04	13.86	0.02	0.657	6.27	0.00	3.3	96.7	0.0	-1.47	0.82	0.80	2.52	2.8	0.007	0.74	0.0	0.04	15.09	0.01	1.151	13.60	2.33	4.1	95.9	0.0	-0.12	1.22	0.87	0.90	2.24	52154	2445	25	1527	157	0	0	logfile
✔	6RRS	4989	2023-07-16	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	8HGS	34746	2023-07-09	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	8.45	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.89	0.0	0.05	14.70	0.00	2.142	13.72	0.54	9.0	90.7	0.2	-1.68	1.48	0.71	0.70	2.42	10080	1280	8	0	12	0	0	logfile
✔	7SQF	25383	2023-07-04	2021-11-05	3.1	2.70	—	3.2	0.005	0.60	0.0	0.05	13.94	0.00	2.409	5.35	0.00	3.0	97.0	0.0	1.39	0.81	0.75	2.77	3.1	0.004	0.67	0.0	0.05	17.21	0.00	2.074	11.08	0.74	3.2	96.8	0.0	0.70	1.10	0.82	0.81	2.84	6630	819	6	0	12	0	0	logfile
✔	6TE0	10473	2023-07-13	2019-11-10	3.92	3.97	3.90	3.8	0.007	0.81	0.0	0.05	11.47	0.01	1.432	3.80	0.00	4.0	95.9	0.0	-3.76	0.80	0.81	2.25	3.8	0.003	0.59	0.0	0.04	14.19	0.00	1.737	11.29	0.10	4.9	95.1	0.0	-0.65	0.87	0.80	0.82	1.98	79188	5136	29	0	11	0	39835	logfile
✔	7RAM	24369	2023-07-06	2021-07-02	3.43	4.07	3.55	4.0	0.002	0.57	0.0	0.04	14.51	0.00	2.154	7.54	0.00	4.4	95.6	0.0	-0.56	0.72	0.76	2.24	4.0	0.004	0.63	0.0	0.04	16.20	0.00	2.201	9.22	0.22	5.8	94.2	0.0	-0.32	0.34	0.72	0.77	1.60	12006	1497	4	0	0	0	0	logfile
✔	7K7i	22700	2023-07-06	2020-09-22	3.13	3.82	3.10	3.4	0.003	0.55	0.0	0.04	12.85	0.00	2.211	11.41	0.00	12.2	87.8	0.0	-5.32	0.75	0.73	3.80	3.4	0.004	0.75	0.0	0.05	15.10	0.00	2.096	16.61	0.55	10.6	89.4	0.0	-2.86	1.45	0.81	0.86	2.97	13195	1705	15	0	0	0	0	logfile
✔	8AQV	15591	2023-07-04	2022-08-13	2.96	3.40	3.09	3.4	0.003	0.71	0.0	0.04	13.07	0.00	2.164	4.53	0.00	4.8	94.5	0.6	-1.32	0.64	0.80	2.89	3.4	0.002	0.62	0.0	0.04	16.31	0.00	2.193	5.80	1.60	4.7	94.8	0.5	0.25	0.55	0.62	0.80	1.99	6447	789	4	0	3	0	0	logfile
✔	8FH3	29078	2023-07-12	2022-12-13	4.3	3.61	3.35	2.8	0.010	0.99	0.0	0.06	11.99	0.01	2.008	16.10	0.00	7.4	92.5	0.1	-2.93	0.75	0.58	—	2.2	0.003	0.66	0.0	0.04	12.14	0.00	2.151	9.86	0.00	5.3	94.7	0.0	-0.75	1.17	0.81	0.76	—	26773	3642	7	0	4	0	0	logfile
✔	7YR0	34041	2023-07-03	2022-08-08	3.98	4.16	3.84	4.1	0.003	0.68	0.0	0.05	13.75	0.00	2.164	11.64	0.00	8.3	91.4	0.2	-1.76	0.64	0.77	2.12	4.1	0.005	0.73	0.0	0.04	15.90	0.00	2.185	17.23	0.56	11.9	87.9	0.2	-1.93	0.42	0.64	0.79	2.05	3383	427	4	0	4	0	0	logfile
✔	5L3P	4001	2023-07-25	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.34	0.02	2.115	7.18	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.007	1.28	4.0	0.06	18.96	0.01	1.742	61.81	1.02	12.1	87.1	0.8	-2.95	2.41	0.68	0.46	-0.03	149606	6419	58	4704	76	0	0	logfile
✔	7CM5	30401	2023-07-17	2020-07-24	2.6	2.44	—	2.7	0.003	0.77	0.0	0.04	8.24	0.01	2.309	3.65	0.00	3.8	96.2	0.0	-3.70	0.75	0.77	1.89	2.7	0.003	0.65	0.0	0.04	15.37	0.00	2.221	7.17	1.54	3.0	97.0	0.0	1.56	1.38	0.77	0.85	2.12	38304	4888	8	0	0	0	0	logfile
✔	7o4K	12721	2023-07-16	2021-04-06	3.6	3.32	3.45	3.2	0.002	0.46	0.0	0.04	14.01	0.00	2.001	3.39	0.00	2.0	98.0	0.0	1.05	0.64	0.72	2.30	3.2	0.002	0.60	0.0	0.04	16.55	0.00	2.016	8.43	0.34	2.9	97.1	0.0	0.67	0.68	0.68	0.77	1.77	34264	4216	25	20	14	0	0	logfile
✔	7PL9	13485	2023-07-17	2021-08-29	3.21	3.18	3.25	3.2	0.006	0.68	0.0	0.08	13.26	0.00	2.209	7.23	0.00	5.3	94.7	0.0	-3.28	0.69	0.79	2.11	3.2	0.005	0.64	0.0	0.04	15.82	0.00	2.202	6.22	0.28	3.3	96.7	0.0	1.78	0.68	0.70	0.86	1.75	37945	4970	10	0	5	0	0	logfile
✔	7M6o	23702	2023-07-07	2021-03-26	2.84	3.65	2.87	3.4	0.009	1.38	0.0	0.09	11.92	0.01	2.171	5.25	0.00	2.8	97.2	0.0	-0.30	0.83	0.83	3.89	3.4	0.003	0.66	0.0	0.04	15.14	0.00	2.221	9.28	2.45	3.5	96.5	0.0	0.56	0.75	0.81	0.84	3.44	14670	1790	10	0	10	0	0	logfile

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