Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6YXR	10995	2021-05-07	2020-05-03	3.4	3.53	3.43	3.5	0.019	2.28	2.0	0.13	20.87	0.02	1.197	26.90	0.44	4.1	95.7	0.3	-3.53	0.67	0.76	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31910	2783	20	0	194	0	0	logfile
✘	7JMG	22393	2021-05-07	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.33	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	6TM2	10517	2021-05-07	2019-12-03	2.95	3.12	—	3.1	0.008	1.02	0.0	0.06	10.00	0.01	2.181	3.03	0.10	11.3	88.7	0.0	-4.14	0.44	0.47	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55254	7230	60	0	54	138	0	logfile
✘	7A4M	11638	2021-05-07	2020-08-20	1.22	1.13	1.29	1.2	0.010	1.37	0.0	0.09	13.82	0.01	0.001	2.43	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✘	6SL5	10236	2021-05-07	2019-08-18	2.84	2.97	2.83	3.0	0.027	3.07	9.0	0.14	22.49	0.03	1.180	20.69	0.73	7.3	92.0	0.7	-3.12	0.71	0.77	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✘	7CN2	30414	2021-05-06	2020-07-29	3.43	3.94	—	4.0	0.006	1.06	5.0	0.06	15.71	0.01	1.385	8.80	4.47	7.9	91.5	0.6	-3.95	0.37	0.80	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32841	4233	18	0	0	0	0	logfile
✘	6XQN	22290	2021-05-03	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.69	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9433	1290	10	0	1	0	0	logfile
✘	7BRM	30160	2021-05-04	2020-03-29	3.6	3.70	3.49	3.7	0.011	0.84	0.0	0.05	13.83	0.00	2.128	16.83	0.00	14.1	85.9	0.0	-3.24	0.75	0.86	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20277	2619	18	0	0	0	0	logfile
✘	6MRC	9195	2021-05-03	2018-10-12	3.08	3.40	—	3.4	0.007	0.81	0.0	0.07	10.51	0.00	1.988	27.50	0.18	7.5	92.3	0.2	-2.93	0.81	0.83	3.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69132	8792	56	0	28	98	2954	logfile
✘	6WLB	21820	2021-05-06	2020-04-19	3.5	3.89	—	3.8	0.004	0.56	0.0	0.06	13.08	0.00	2.123	6.72	0.16	4.2	95.8	0.0	1.33	0.66	0.78	1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34441	2160	6	0	15	0	16960	logfile
✘	6LQJ	0947	2021-05-04	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.76	0.0	0.05	16.29	0.00	2.216	11.00	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17100	2214	18	0	0	0	0	logfile
✘	6UoV	20833	2021-05-03	2019-10-15	3.5	3.64	—	3.6	0.009	1.14	0.0	0.06	11.36	0.01	2.232	6.69	3.40	6.4	93.6	0.0	-5.22	0.75	0.82	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69851	8694	46	0	0	0	0	logfile
✘	6YMY	10848	2021-05-04	2020-04-10	3.41	3.81	3.50	3.7	0.007	1.10	0.0	0.06	15.11	0.01	0.424	7.43	0.27	8.9	91.0	0.1	-6.00	0.68	0.81	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1766	19	0	16	0	0	logfile
✘	6YMX	10847	2021-05-06	2020-04-10	3.17	3.73	3.27	3.6	0.009	1.01	0.0	0.06	15.09	0.01	1.180	6.91	0.39	6.1	93.9	0.1	-5.84	0.76	0.84	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47034	5759	47	0	38	0	0	logfile
✘	6WTi	21897	2021-05-03	2020-05-02	2.38	2.42	—	2.5	0.009	1.16	5.0	0.07	18.54	0.01	1.179	8.72	11.79	4.6	95.3	0.1	-3.48	0.60	0.74	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9980	1207	8	0	14	0	0	logfile
✘	6Y57	10690	2021-05-11	2020-02-25	3.5	3.67	—	3.5	0.006	0.86	0.0	0.05	16.86	0.01	1.332	6.12	1.04	8.4	91.4	0.2	-4.84	0.89	0.86	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	206539	11053	105	5669	167	19	0	logfile
✘	6VYi	21461	2021-05-03	2020-02-26	3.0	3.28	—	3.2	0.012	1.20	0.0	0.05	18.80	0.00	2.157	10.51	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6916	812	4	0	4	0	0	logfile
✘	6WBV	21599	2021-05-03	2020-03-27	2.5	2.82	2.57	2.7	0.006	0.88	2.0	0.05	15.20	0.01	1.797	7.10	4.26	3.5	96.5	0.0	-0.54	0.67	0.87	4.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6860	892	7	0	4	11	0	logfile
✘	6VMi	21242	2021-05-09	2020-01-28	2.96	3.46	—	3.3	0.002	0.45	3.0	0.03	12.07	0.00	1.253	7.62	0.84	10.8	87.5	1.7	-2.79	0.70	0.60	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	176217	14904	107	2592	283	0	0	logfile
✘	6VLZ	21233	2021-05-09	2020-01-27	2.97	3.50	—	3.3	0.002	0.42	1.0	0.03	12.04	0.00	1.115	7.44	0.89	10.8	87.5	1.7	-2.83	0.70	0.61	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	174849	14904	107	2561	243	0	0	logfile

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