Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3JAP	3048	2021-01-06	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.250	9.40	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98333	7272	53	1869	255	0	0	logfile
✘	5UYN	8618	2021-01-14	2017-02-24	4.0	4.51	4.59	3.6	0.007	1.02	0.0	0.09	13.78	0.01	1.221	13.11	1.31	13.9	83.2	2.9	-5.06	0.86	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153717	6474	60	4809	1	0	0	logfile
✘	6KAF	9957	2021-01-07	2019-06-22	3.73	3.95	—	3.7	0.012	1.33	0.0	0.06	18.07	0.02	1.212	7.86	0.62	10.0	90.0	0.1	-3.68	0.78	0.73	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✘	5XNL	6741	2021-01-06	2017-05-23	2.7	2.75	—	2.8	0.012	1.34	0.0	0.07	15.85	0.02	1.207	10.13	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✘	5UYL	8616	2021-01-14	2017-02-24	3.6	4.26	7.95	3.6	0.010	1.05	0.0	0.09	13.71	0.01	1.246	12.53	1.12	12.2	85.6	2.2	-4.96	0.89	0.82	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153753	6476	63	4810	1	0	0	logfile
✘	5UYQ	8620	2021-01-14	2017-02-24	3.8	4.28	4.16	3.7	0.007	1.04	0.0	0.09	14.22	0.01	1.222	14.20	1.29	13.9	83.4	2.7	-5.24	0.86	0.79	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153759	6476	63	4810	2	0	0	logfile
✘	6GWT	0076	2021-01-13	2018-06-25	3.8	4.53	—	4.2	0.004	0.84	5.0	0.04	13.81	0.01	1.229	5.98	0.19	8.2	91.3	0.5	-4.05	0.85	0.83	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151484	6670	59	4639	1	0	0	logfile
✘	6ADQ	9610	2021-01-07	2018-08-01	3.5	3.66	3.51	3.6	0.015	1.62	0.0	0.27	14.40	0.02	1.170	9.67	0.51	9.8	90.1	0.1	-4.62	0.67	0.81	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48946	6026	44	0	74	0	0	logfile
✘	5XNM	6742	2021-01-06	2017-05-23	3.2	3.28	—	3.3	0.010	1.40	0.0	0.07	15.91	0.02	1.205	9.85	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✘	6FYY	4328	2021-01-07	2018-03-12	3.02	3.15	3.09	3.1	0.007	1.33	57.0	0.10	20.55	0.01	0.817	7.34	10.74	8.2	89.1	2.7	-1.95	0.63	0.83	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104316	8066	54	1885	201	0	0	logfile
✘	6YLF	10837	2021-01-06	2020-04-07	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	5UYM	8617	2021-01-14	2017-02-24	3.2	4.16	3.27	3.2	0.007	1.00	0.0	0.08	13.54	0.01	1.236	12.37	1.17	11.5	86.5	2.0	-5.21	0.91	0.82	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	154139	6476	72	4810	386	0	0	logfile
✘	5UYK	8615	2021-01-14	2017-02-24	3.9	4.36	4.13	3.8	0.008	1.02	0.0	0.09	13.52	0.01	1.222	11.48	0.88	11.8	86.4	1.7	-4.85	0.89	0.83	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	154412	6563	60	4812	1	0	0	logfile
✘	5UYP	8619	2021-01-14	2017-02-24	3.9	4.42	4.29	3.6	0.007	1.06	0.0	0.09	13.91	0.01	1.220	12.94	1.57	14.3	82.6	3.1	-5.15	0.87	0.79	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153780	6476	63	4811	1	0	0	logfile
✘	5ZGB	6929	2021-01-07	2018-03-08	3.63	3.79	—	3.7	0.011	1.40	0.0	0.07	18.32	0.01	1.175	15.03	0.43	12.9	86.8	0.3	-5.22	0.73	0.74	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✘	5ZJi	6932	2021-01-07	2018-03-20	3.3	3.39	—	3.4	0.012	1.32	0.0	0.11	17.77	0.02	1.204	7.94	0.45	6.5	93.5	0.0	-3.56	0.68	0.84	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44708	4087	40	0	271	0	0	logfile
✘	6GXP	0083	2021-01-12	2018-06-27	4.4	5.60	—	5.1	0.003	0.80	6.0	0.04	14.00	0.01	1.229	5.43	0.27	8.3	91.2	0.5	-4.12	0.84	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147637	6392	56	4555	1	0	0	logfile
✘	6GXM	0080	2021-01-13	2018-06-27	3.8	4.73	—	4.3	0.004	0.81	0.0	0.04	13.85	0.01	1.229	6.05	0.20	8.4	91.2	0.4	-4.08	0.85	0.83	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151394	6643	59	4639	1	0	0	logfile
✘	6J6Q	0692	2021-01-06	2019-01-15	3.7	3.85	—	3.7	0.008	0.99	0.0	0.06	14.74	0.01	1.463	18.04	2.93	4.9	94.2	0.9	-3.65	0.62	0.66	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80535	9167	50	549	15	0	0	logfile
✘	6UiW	20789	2021-01-06	2019-10-01	2.7	3.36	—	3.1	0.010	0.99	0.0	0.05	14.23	0.01	1.838	6.39	1.10	3.1	96.9	0.0	-3.44	0.71	0.81	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23617	3234	22	0	11	0	0	logfile

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