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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JAP | 3048 | 2021-01-06 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.250 | 9.40 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✘ | 5UYN | 8618 | 2021-01-14 | 2017-02-24 | 4.0 | 4.51 | 4.59 | 3.6 | 0.007 | 1.02 | 0.0 | 0.09 | 13.78 | 0.01 | 1.221 | 13.11 | 1.31 | 13.9 | 83.2 | 2.9 | -5.06 | 0.86 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153717 | 6474 | 60 | 4809 | 1 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2021-01-07 | 2019-06-22 | 3.73 | 3.95 | — | 3.7 | 0.012 | 1.33 | 0.0 | 0.06 | 18.07 | 0.02 | 1.212 | 7.86 | 0.62 | 10.0 | 90.0 | 0.1 | -3.68 | 0.78 | 0.73 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2021-01-06 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.012 | 1.34 | 0.0 | 0.07 | 15.85 | 0.02 | 1.207 | 10.13 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 5UYL | 8616 | 2021-01-14 | 2017-02-24 | 3.6 | 4.26 | 7.95 | 3.6 | 0.010 | 1.05 | 0.0 | 0.09 | 13.71 | 0.01 | 1.246 | 12.53 | 1.12 | 12.2 | 85.6 | 2.2 | -4.96 | 0.89 | 0.82 | 1.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153753 | 6476 | 63 | 4810 | 1 | 0 | 0 | logfile |
✘ | 5UYQ | 8620 | 2021-01-14 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.04 | 0.0 | 0.09 | 14.22 | 0.01 | 1.222 | 14.20 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |
✘ | 6GWT | 0076 | 2021-01-13 | 2018-06-25 | 3.8 | 4.53 | — | 4.2 | 0.004 | 0.84 | 5.0 | 0.04 | 13.81 | 0.01 | 1.229 | 5.98 | 0.19 | 8.2 | 91.3 | 0.5 | -4.05 | 0.85 | 0.83 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151484 | 6670 | 59 | 4639 | 1 | 0 | 0 | logfile |
✘ | 6ADQ | 9610 | 2021-01-07 | 2018-08-01 | 3.5 | 3.66 | 3.51 | 3.6 | 0.015 | 1.62 | 0.0 | 0.27 | 14.40 | 0.02 | 1.170 | 9.67 | 0.51 | 9.8 | 90.1 | 0.1 | -4.62 | 0.67 | 0.81 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48946 | 6026 | 44 | 0 | 74 | 0 | 0 | logfile |
✘ | 5XNM | 6742 | 2021-01-06 | 2017-05-23 | 3.2 | 3.28 | — | 3.3 | 0.010 | 1.40 | 0.0 | 0.07 | 15.91 | 0.02 | 1.205 | 9.85 | 0.03 | 2.3 | 97.7 | 0.0 | -2.60 | 0.71 | 0.82 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✘ | 6FYY | 4328 | 2021-01-07 | 2018-03-12 | 3.02 | 3.15 | 3.09 | 3.1 | 0.007 | 1.33 | 57.0 | 0.10 | 20.55 | 0.01 | 0.817 | 7.34 | 10.74 | 8.2 | 89.1 | 2.7 | -1.95 | 0.63 | 0.83 | 1.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104316 | 8066 | 54 | 1885 | 201 | 0 | 0 | logfile |
✘ | 6YLF | 10837 | 2021-01-06 | 2020-04-07 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 5UYM | 8617 | 2021-01-14 | 2017-02-24 | 3.2 | 4.16 | 3.27 | 3.2 | 0.007 | 1.00 | 0.0 | 0.08 | 13.54 | 0.01 | 1.236 | 12.37 | 1.17 | 11.5 | 86.5 | 2.0 | -5.21 | 0.91 | 0.82 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154139 | 6476 | 72 | 4810 | 386 | 0 | 0 | logfile |
✘ | 5UYK | 8615 | 2021-01-14 | 2017-02-24 | 3.9 | 4.36 | 4.13 | 3.8 | 0.008 | 1.02 | 0.0 | 0.09 | 13.52 | 0.01 | 1.222 | 11.48 | 0.88 | 11.8 | 86.4 | 1.7 | -4.85 | 0.89 | 0.83 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154412 | 6563 | 60 | 4812 | 1 | 0 | 0 | logfile |
✘ | 5UYP | 8619 | 2021-01-14 | 2017-02-24 | 3.9 | 4.42 | 4.29 | 3.6 | 0.007 | 1.06 | 0.0 | 0.09 | 13.91 | 0.01 | 1.220 | 12.94 | 1.57 | 14.3 | 82.6 | 3.1 | -5.15 | 0.87 | 0.79 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153780 | 6476 | 63 | 4811 | 1 | 0 | 0 | logfile |
✘ | 5ZGB | 6929 | 2021-01-07 | 2018-03-08 | 3.63 | 3.79 | — | 3.7 | 0.011 | 1.40 | 0.0 | 0.07 | 18.32 | 0.01 | 1.175 | 15.03 | 0.43 | 12.9 | 86.8 | 0.3 | -5.22 | 0.73 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✘ | 5ZJi | 6932 | 2021-01-07 | 2018-03-20 | 3.3 | 3.39 | — | 3.4 | 0.012 | 1.32 | 0.0 | 0.11 | 17.77 | 0.02 | 1.204 | 7.94 | 0.45 | 6.5 | 93.5 | 0.0 | -3.56 | 0.68 | 0.84 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44708 | 4087 | 40 | 0 | 271 | 0 | 0 | logfile |
✘ | 6GXP | 0083 | 2021-01-12 | 2018-06-27 | 4.4 | 5.60 | — | 5.1 | 0.003 | 0.80 | 6.0 | 0.04 | 14.00 | 0.01 | 1.229 | 5.43 | 0.27 | 8.3 | 91.2 | 0.5 | -4.12 | 0.84 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147637 | 6392 | 56 | 4555 | 1 | 0 | 0 | logfile |
✘ | 6GXM | 0080 | 2021-01-13 | 2018-06-27 | 3.8 | 4.73 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 13.85 | 0.01 | 1.229 | 6.05 | 0.20 | 8.4 | 91.2 | 0.4 | -4.08 | 0.85 | 0.83 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151394 | 6643 | 59 | 4639 | 1 | 0 | 0 | logfile |
✘ | 6J6Q | 0692 | 2021-01-06 | 2019-01-15 | 3.7 | 3.85 | — | 3.7 | 0.008 | 0.99 | 0.0 | 0.06 | 14.74 | 0.01 | 1.463 | 18.04 | 2.93 | 4.9 | 94.2 | 0.9 | -3.65 | 0.62 | 0.66 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80535 | 9167 | 50 | 549 | 15 | 0 | 0 | logfile |
✘ | 6UiW | 20789 | 2021-01-06 | 2019-10-01 | 2.7 | 3.36 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.05 | 14.23 | 0.01 | 1.838 | 6.39 | 1.10 | 3.1 | 96.9 | 0.0 | -3.44 | 0.71 | 0.81 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23617 | 3234 | 22 | 0 | 11 | 0 | 0 | logfile |