Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DA4	30622	2022-04-04	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	3J2P	5499	2022-04-05	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.36	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.77	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	5A9Z	6396	2022-04-13	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.39	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.007	1.03	0.0	0.05	19.42	0.01	0.000	40.39	0.19	21.0	76.7	2.4	-4.44	2.93	0.87	0.82	—	150547	6671	58	4527	131	0	0	logfile
✔	7DWV	30887	2022-04-04	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	18.36	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7oHF	12901	2022-04-08	2021-05-10	3.0	3.29	3.12	3.4	0.008	0.89	0.0	0.05	9.77	0.01	2.144	2.67	0.00	0.6	99.4	0.0	-7.39	0.64	0.80	4.20	3.4	0.002	0.60	0.0	0.04	15.45	0.00	2.127	8.32	0.12	0.0	100.0	0.0	-0.18	1.61	0.63	0.82	2.79	33576	4056	24	0	0	0	0	logfile
✔	7CYE	30498	2022-04-04	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.004	0.93	0.0	0.04	15.06	0.01	2.103	6.64	0.52	10.1	89.9	0.0	-2.70	0.86	0.59	0.81	2.03	7263	978	3	0	0	0	0	logfile
✔	7BSP	30163	2022-04-05	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	14.29	0.01	1.928	53.84	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.75	0.0	0.04	16.45	0.00	2.163	13.15	0.42	7.5	92.5	0.0	-2.51	0.63	0.68	0.86	—	11010	1352	5	0	5	0	0	logfile
✔	3J06	5185	2022-04-05	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.24	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.005	0.92	0.0	0.04	20.49	0.01	2.171	17.24	1.07	8.0	90.2	1.8	-2.96	1.27	0.55	0.79	2.24	62916	7595	98	147	0	0	0	logfile
✔	6N1H	8902	2022-04-05	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	31.06	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.71	0.0	0.04	17.49	0.01	2.165	9.68	2.87	6.3	93.7	0.0	1.26	2.37	0.62	0.83	1.74	10991	1328	16	0	0	0	0	logfile
✘	7D61	30587	2022-04-07	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.27	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	6o9J	0661	2022-04-09	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.29	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.09	10.0	0.05	17.02	0.01	1.293	32.70	0.58	23.4	73.7	3.0	-4.89	1.14	0.79	0.75	0.36	142682	5731	53	4564	0	0	0	logfile
✔	6RJU	4906	2022-04-04	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6HQE	0252	2022-04-04	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.74	0.0	0.04	12.12	0.01	2.264	19.28	0.00	2.6	97.4	0.0	1.06	1.03	0.65	0.84	—	9360	1196	52	0	0	0	0	logfile
✔	6TUP	10593	2022-04-06	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.55	0.60	-0.09	22400	2300	100	300	0	0	0	logfile
✘	7D65	30589	2022-04-07	2020-09-29	2.94	3.09	—	3.2	0.008	0.94	0.0	0.05	16.49	0.01	2.328	1.94	0.14	4.3	95.7	0.0	-7.00	0.66	0.81	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	7D60	30586	2022-04-07	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.44	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.59	0.0	0.03	17.57	0.00	2.200	4.01	1.79	2.5	97.5	0.0	1.45	0.54	0.69	0.83	2.00	26664	3168	22	0	55	0	0	logfile
✔	6PW5	20499	2022-04-07	2019-07-22	3.45	3.53	—	3.5	0.013	1.39	0.0	0.07	14.34	0.01	2.327	4.38	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.003	0.70	0.0	0.04	15.91	0.00	2.142	8.38	0.31	8.2	91.5	0.3	-0.48	0.71	0.75	0.85	1.69	24740	3032	8	0	12	0	0	logfile
✔	6RoW	4975	2022-04-09	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	49.47	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.003	0.67	0.0	0.04	13.72	0.00	1.972	11.87	0.00	13.1	86.7	0.1	-2.58	1.49	0.81	0.73	—	43049	3129	7	0	0	0	20156	logfile
✔	6PW4	20498	2022-04-06	2019-07-22	3.53	3.64	—	3.6	0.008	1.14	0.0	0.05	16.95	0.01	2.302	5.63	0.38	10.7	89.3	0.1	-6.92	0.71	0.80	1.68	3.6	0.010	1.06	1.0	0.04	17.58	0.01	1.703	15.42	0.17	9.9	90.0	0.1	-2.16	0.53	0.70	0.79	1.19	22348	2742	8	0	10	0	0	logfile
✔	6GGS	4399	2022-04-04	2018-05-03	3.94	3.85	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.8	0.005	1.14	0.0	0.05	17.31	0.00	2.083	29.21	0.63	3.8	96.2	0.0	-2.89	3.54	0.51	0.77	2.06	6880	860	10	0	0	0	0	logfile

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