Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DA4	30622	2023-02-16	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	3J2P	5499	2023-02-19	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.20	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.90	0.00	1.839	69.59	1.15	18.3	78.2	3.6	-4.35	0.93	0.38	0.72	1.24	9890	1134	8	0	6	0	1086	logfile
✔	7V49	31704	2023-02-16	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✔	7DWV	30887	2023-02-16	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.72	0.0	0.05	17.18	0.00	2.182	17.15	1.19	22.4	77.6	0.0	-6.08	1.50	0.41	0.75	2.54	2064	258	6	0	0	0	0	logfile
✔	7CYE	30498	2023-02-18	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.003	0.89	0.0	0.04	14.85	0.01	2.091	7.04	0.26	10.5	89.5	0.0	-2.91	0.86	0.60	0.81	2.82	7263	978	3	0	0	0	0	logfile
✔	7BSP	30163	2023-02-20	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	14.29	0.01	1.928	53.89	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.74	0.0	0.04	16.19	0.00	2.164	11.88	0.42	7.5	92.5	0.0	-2.46	0.63	0.68	0.86	—	11010	1352	5	0	5	0	0	logfile
✔	3J06	5185	2023-02-23	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.003	0.88	0.0	0.04	20.32	0.01	2.209	17.76	0.98	6.9	91.2	1.8	-3.04	1.28	0.55	0.78	2.20	62916	7595	98	147	0	0	0	logfile
✔	6N1H	8902	2023-02-20	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	31.61	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.74	0.0	0.04	17.47	0.00	2.143	11.92	2.70	7.2	92.8	0.0	1.00	4.76	0.63	0.84	1.82	10991	1328	16	0	0	0	0	logfile
✔	8GQY	34203	2023-02-19	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.65	0.0	0.04	15.11	0.00	2.171	7.06	0.70	1.8	98.2	0.0	-0.57	1.39	0.66	0.86	2.19	9515	1265	5	0	0	0	0	logfile
✘	7D61	30587	2023-02-25	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.22	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	6HQE	0252	2023-02-19	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.77	0.0	0.04	11.97	0.01	2.226	19.13	0.00	2.7	97.3	0.0	1.18	1.68	0.64	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	7D65	30589	2023-02-25	2020-09-29	2.94	3.09	—	3.2	0.008	0.94	0.0	0.05	16.53	0.01	2.328	1.94	0.14	4.3	95.7	0.0	-7.00	0.66	0.81	2.37	3.2	0.003	0.65	0.0	0.04	17.17	0.00	2.195	4.80	1.93	1.9	98.1	0.0	-0.47	1.22	0.67	0.82	1.57	26664	3168	22	0	55	0	0	logfile
✔	7D60	30586	2023-02-25	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.40	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.59	0.0	0.03	17.69	0.00	2.194	3.75	1.83	2.6	97.4	0.0	0.99	0.52	0.69	0.84	2.11	26664	3168	22	0	55	0	0	logfile
✔	6PW5	20499	2023-02-25	2019-07-22	3.45	3.53	—	3.5	0.013	1.39	0.0	0.07	14.18	0.01	2.327	4.38	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.005	0.77	0.0	0.04	16.46	0.00	2.174	9.61	0.80	9.5	90.2	0.4	-1.21	1.17	0.76	0.87	2.20	24740	3032	8	0	12	0	0	logfile
✔	6PW4	20498	2023-02-24	2019-07-22	3.53	3.64	—	3.6	0.008	1.14	0.0	0.05	17.20	0.01	2.302	5.63	0.38	10.7	89.3	0.1	-6.92	0.71	0.80	1.68	3.6	0.003	0.72	0.0	0.04	17.49	0.00	2.127	11.19	0.42	9.9	90.1	0.0	-1.43	0.56	0.70	0.78	1.07	22348	2742	8	0	10	0	0	logfile
✔	6GGS	4399	2023-02-18	2018-05-03	3.94	3.85	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.8	0.004	1.08	0.0	0.04	17.49	0.00	2.106	25.13	1.01	3.0	97.0	0.0	-3.01	3.52	0.51	0.76	1.92	6880	860	10	0	0	0	0	logfile
✘	6PVN	20494	2023-02-23	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20874	2576	6	0	2	0	0	logfile
✔	6X3F	22021	2023-02-19	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.61	0.0	0.04	15.78	0.00	2.282	6.67	0.10	3.6	96.4	0.0	-0.25	0.95	0.53	0.84	2.06	9366	1227	6	0	3	0	0	logfile
✔	6KiQ	9997	2023-02-21	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.004	0.79	0.0	0.04	17.23	0.01	2.014	12.73	0.24	12.6	86.8	0.6	-2.74	1.16	0.62	0.75	1.20	15093	968	3	0	0	0	7444	logfile

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