Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DA4	30622	2021-08-07	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	77.78	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	7.1	0.004	1.01	0.0	0.04	12.09	0.00	2.235	22.22	0.00	30.0	70.0	0.0	-6.55	3.69	0.42	0.65	—	507	66	3	0	0	0	0	logfile
✔	3J2P	5499	2021-08-07	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.005	0.95	0.0	0.05	18.13	0.01	1.915	70.82	1.89	22.6	74.2	3.3	-4.29	0.96	0.39	0.73	0.90	9890	1134	6	0	6	0	1086	logfile
✘	5A9Z	6396	2021-08-16	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	196.22	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150547	6671	58	4527	131	0	0	logfile
✔	7CYE	30498	2021-08-07	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.004	0.93	0.0	0.04	14.99	0.01	2.146	7.31	0.39	10.4	89.6	0.0	-2.69	1.55	0.59	0.80	2.00	7263	978	3	0	0	0	0	logfile
✔	7BSP	30163	2021-08-08	2020-03-31	4.0	4.12	—	4.0	0.005	0.64	0.0	0.04	14.24	0.01	1.928	52.61	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.74	0.0	0.04	16.29	0.00	2.165	12.47	0.17	6.8	93.2	0.0	-2.24	0.67	0.68	0.86	—	11010	1352	5	0	5	0	0	logfile
✔	3J06	5185	2021-08-09	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	78.71	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.005	0.99	0.0	0.04	20.13	0.01	2.190	17.77	1.20	6.7	91.6	1.7	-2.99	1.30	0.56	0.79	2.30	62916	7595	98	147	0	0	0	logfile
✔	6N1H	8902	2021-08-08	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	30.92	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.69	0.0	0.04	17.79	0.01	2.180	9.31	3.04	6.6	93.4	0.0	1.00	4.70	0.63	0.84	1.76	10991	1328	16	0	0	0	0	logfile
✘	7D61	30587	2021-08-09	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.27	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	6RJU	4906	2021-08-07	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	6o9J	0661	2021-08-13	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.05	8.0	0.04	16.97	0.01	1.337	28.96	0.58	22.8	74.6	2.6	-4.48	2.10	0.79	0.76	0.23	142682	5731	53	4564	0	0	0	logfile
✔	6HQE	0252	2021-08-07	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.79	0.0	0.04	12.18	0.01	2.238	16.62	0.00	2.9	97.1	0.0	1.12	1.08	0.63	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	6TUP	10593	2021-08-09	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.032	2.22	0.0	0.21	26.94	0.01	1.011	99.23	1.25	2.0	98.0	0.0	-1.97	9.62	0.56	0.59	-0.04	22400	2300	100	300	0	0	0	logfile
✘	7D65	30589	2021-08-09	2020-09-29	2.94	3.09	—	3.2	0.008	0.94	0.0	0.05	16.49	0.01	2.328	1.94	0.14	4.3	95.7	0.0	-7.00	0.66	0.81	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	7D60	30586	2021-08-09	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.44	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.003	0.60	0.0	0.04	17.60	0.00	2.321	3.54	2.36	2.1	97.9	0.0	0.90	0.52	0.69	0.83	1.99	26664	3168	22	0	55	0	0	logfile
✔	6RoW	4975	2021-08-11	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	45.07	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.005	0.70	0.0	0.04	13.59	0.00	1.943	13.71	0.05	15.3	84.5	0.1	-2.35	1.51	0.81	0.74	—	43049	3129	7	0	0	0	20156	logfile
✔	6PW5	20499	2021-08-09	2019-07-22	3.45	3.53	—	3.5	0.013	1.54	0.0	0.07	14.31	0.01	2.327	4.38	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.005	0.95	0.0	0.04	16.27	0.00	2.141	8.86	0.42	9.2	90.5	0.3	-1.19	1.18	0.76	0.86	2.12	24740	3032	8	0	12	0	0	logfile
✔	6PW4	20498	2021-08-09	2019-07-22	3.53	3.64	—	3.6	0.007	1.24	0.0	0.05	16.86	0.01	2.302	5.63	0.38	10.7	89.3	0.1	-6.92	0.71	0.80	1.68	3.6	0.012	1.30	3.0	0.04	17.54	0.01	1.829	14.84	0.29	9.6	90.3	0.1	-1.86	0.58	0.71	0.79	0.90	22348	2742	8	0	10	0	0	logfile
✔	6GGS	4399	2021-08-07	2018-05-03	3.94	3.84	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.9	0.005	1.10	0.0	0.05	17.46	0.00	2.103	28.49	0.76	2.9	97.1	0.0	-3.08	3.55	0.50	0.76	1.67	6880	860	10	0	0	0	0	logfile
✔	6PVN	20494	2021-08-09	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	4.1	0.004	0.82	0.0	0.04	13.72	0.00	2.187	9.93	0.00	13.6	86.3	0.2	-1.64	1.04	0.70	0.81	—	20874	2576	6	0	2	0	0	logfile
✔	6X3F	22021	2021-08-07	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.75	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.002	0.60	0.0	0.04	15.89	0.00	2.290	6.00	0.39	3.4	96.6	0.0	-0.19	1.27	0.59	0.86	2.07	9366	1227	6	0	3	0	0	logfile

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