Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M65	23689	2021-12-01	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.88	0.0	0.05	11.88	0.00	2.144	20.38	0.00	14.5	85.5	0.0	-6.10	4.44	0.52	0.72	—	2025	275	10	0	5	0	0	logfile
✔	6oY3	20221	2021-12-01	2019-05-14	4.0	4.14	—	4.1	0.009	1.10	0.0	0.06	15.73	0.01	2.285	9.39	0.40	6.9	92.9	0.2	-6.09	0.68	0.81	—	4.1	0.003	0.68	0.0	0.04	17.05	0.00	2.260	7.12	0.30	3.1	96.8	0.1	-1.67	0.50	0.68	0.81	—	9534	1188	4	0	4	0	0	logfile
✔	6L1U	0803	2021-12-02	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.4	0.007	0.77	0.0	0.05	16.68	0.00	2.152	13.15	1.08	17.3	82.7	0.0	-5.04	1.97	0.48	0.85	2.84	10515	1500	15	0	0	0	0	logfile
✔	6X3E	22020	2021-12-01	2020-05-21	3.42	3.51	—	3.5	0.006	0.90	0.0	0.06	14.42	0.01	2.083	3.23	0.00	2.9	97.1	0.0	-6.06	0.60	0.87	2.34	3.5	0.003	0.70	0.0	0.04	16.15	0.00	2.071	8.25	0.29	2.5	97.5	0.0	1.13	0.73	0.63	0.88	1.53	9469	1242	4	0	3	0	0	logfile
✔	6J5A	0670	2021-12-01	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	13.04	0.00	2.218	11.14	0.00	8.5	91.5	0.0	-1.38	1.80	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6LNi	0931	2021-12-01	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.40	0.00	2.265	11.19	1.23	11.0	89.0	0.0	-3.93	1.18	0.53	0.86	5.22	4920	600	10	0	0	0	0	logfile
✘	5A7U	3079	2021-12-01	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6P48	20246	2021-12-01	2019-05-26	3.2	3.42	2.97	3.5	0.011	1.56	2.0	0.09	16.57	0.01	2.014	22.33	3.53	6.5	92.6	0.9	-6.05	0.59	0.65	1.57	3.5	0.008	1.10	0.0	0.04	17.37	0.01	1.787	20.32	0.28	9.0	90.8	0.2	-2.15	0.76	0.61	0.66	1.58	9936	1208	4	0	2	0	0	logfile
✔	7BZ2	30249	2021-12-01	2020-04-26	3.82	3.99	—	3.9	0.005	0.66	0.0	0.05	14.76	0.00	2.101	12.28	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.016	1.60	2.0	0.05	16.98	0.00	1.601	12.63	0.41	4.9	94.9	0.1	-3.01	1.58	0.72	0.78	1.15	7393	978	5	0	1	0	0	logfile
✔	6M4H	30078	2021-12-01	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.18	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.007	0.81	0.0	0.04	29.96	0.01	2.095	21.36	0.89	3.6	96.4	0.0	0.94	1.75	0.87	0.85	0.92	9420	656	10	206	0	0	0	logfile
✔	7BSV	30168	2021-12-01	2020-03-31	3.0	3.16	—	3.1	0.005	0.66	0.0	0.05	17.62	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.004	0.69	0.0	0.04	18.01	0.00	1.170	9.42	3.44	5.7	94.3	0.0	-1.15	0.99	0.65	0.89	3.56	9339	1139	6	0	8	4	0	logfile
✔	6MP6	9187	2021-12-01	2018-10-05	3.54	4.04	3.81	4.0	0.006	1.10	0.0	0.06	10.29	0.01	2.439	3.39	0.00	7.9	92.1	0.0	-6.02	0.70	0.81	2.60	4.0	0.003	0.89	0.0	0.04	15.94	0.00	2.238	9.72	0.29	6.5	93.5	0.0	0.46	1.49	0.69	0.83	1.24	9939	1338	6	0	3	0	0	logfile
✔	6VXi	21438	2021-12-01	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	16.00	0.00	2.281	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.012	1.27	1.0	0.04	16.90	0.00	2.099	19.35	0.41	7.4	92.3	0.3	-3.51	0.52	0.61	0.80	2.85	8898	1132	4	0	3	0	0	logfile
✔	6PPL	20442	2021-12-01	2019-07-08	3.02	3.14	—	3.1	0.010	0.95	0.0	0.05	14.21	0.01	1.917	3.14	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	3.1	0.004	0.61	0.0	0.04	16.28	0.00	2.119	6.52	0.12	2.7	97.3	0.0	-0.95	1.92	0.75	0.88	3.24	8155	980	6	0	4	0	0	logfile
✔	7CMi	30407	2021-12-01	2020-07-27	2.9	3.36	—	3.3	0.006	1.00	0.0	0.05	15.30	0.01	1.904	7.35	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.003	0.76	0.0	0.05	16.70	0.00	2.184	8.23	3.28	7.0	92.8	0.1	-0.17	1.10	0.69	0.85	1.53	7353	928	7	0	10	6	0	logfile
✔	7CMH	30406	2021-12-01	2020-07-27	3.4	3.57	—	3.6	0.006	1.05	0.0	0.06	15.38	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.80	2.75	3.5	0.006	0.79	0.0	0.04	16.32	0.01	2.138	8.75	0.65	7.8	92.1	0.1	-1.00	0.60	0.65	0.83	1.83	7368	928	7	0	10	0	0	logfile
✔	6Mi7	9125	2021-12-01	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.42	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.77	0.0	0.04	13.88	0.01	2.271	9.58	0.00	6.0	94.0	0.0	-2.20	1.52	0.60	0.80	—	7285	931	6	0	1	0	0	logfile
✔	5XWY	6777	2021-12-02	2017-06-30	3.2	3.25	—	3.2	0.008	1.17	1.0	0.06	12.95	0.00	2.263	3.64	0.87	7.6	92.3	0.1	-5.96	0.69	0.78	3.96	3.2	0.003	0.74	0.0	0.04	16.24	0.00	2.127	11.02	0.10	7.8	92.2	0.0	-0.06	1.41	0.77	0.84	3.09	10493	1117	2	51	0	0	0	logfile
✔	5X0M	6698	2021-12-02	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✔	6E1M	8957	2021-12-01	2018-07-10	3.3	3.50	3.31	3.6	0.018	1.59	0.0	0.08	15.29	0.01	1.976	8.42	0.11	8.4	91.5	0.1	-5.95	0.50	0.74	3.94	3.6	0.004	0.79	0.0	0.04	16.10	0.01	2.165	11.23	0.56	5.3	94.7	0.0	-0.55	0.75	0.57	0.77	2.36	8913	1072	6	0	23	2	0	logfile

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