Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KU5	23034	2022-11-29	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✘	7WP1	32666	2022-11-29	2022-01-22	3.77	3.91	—	3.9	0.006	1.16	0.0	0.07	14.50	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3305	423	4	0	2	0	0	logfile
✔	6WQK	21871	2022-11-29	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.47	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	5M6S	3451	2022-11-29	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.59	0.0	0.03	18.68	0.00	2.007	8.17	0.00	5.2	94.8	0.0	2.82	2.46	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✘	6XPE	22286	2022-11-29	2020-07-08	4.1	4.23	—	4.2	0.006	0.82	0.0	0.04	14.30	0.00	1.492	20.11	2.08	10.6	88.1	1.3	-5.36	0.60	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4292	554	4	0	8	0	0	logfile
✘	6oSM	20186	2022-11-29	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4100	600	10	0	0	0	0	logfile
✔	5LY6	4118	2022-11-29	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6X12	21986	2022-11-29	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.65	0.0	0.04	15.91	0.00	2.249	7.77	0.63	2.5	97.5	0.0	0.23	1.19	0.67	0.84	1.33	3059	407	1	0	1	0	0	logfile
✔	7VU8	32126	2022-11-29	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	11.96	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.003	0.67	0.0	0.04	16.30	0.00	2.421	5.65	5.30	4.8	95.2	0.0	-1.41	1.18	0.39	0.76	2.98	1433	170	1	0	1	0	0	logfile
✔	6N3A	9349	2022-11-29	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.50	0.78	2.70	4310	600	20	0	0	0	0	logfile
✔	7PY2	13708	2022-11-29	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	6N3B	9350	2022-11-29	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	6R4R	4727	2022-11-29	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile
✘	7WXG	32878	2022-11-29	2022-02-14	4.2	4.21	3.56	4.2	0.005	0.72	0.0	0.04	13.93	0.00	1.181	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3295	430	1	0	1	0	0	logfile
✔	6YJ5	10816	2022-11-29	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.74	0.0	0.05	15.34	0.01	2.238	10.30	0.00	12.2	87.8	0.0	-2.13	0.81	0.51	0.73	3.37	2061	306	1	0	0	0	0	logfile
✔	7E0F	30931	2022-11-29	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.40	0.81	3.91	2022	294	6	0	0	0	0	logfile
✔	6HUD	0274	2022-11-29	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	6.89	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.006	0.86	0.0	0.05	13.22	0.00	2.169	25.57	0.61	11.8	88.2	0.0	-5.00	1.50	0.60	0.80	—	2905	385	5	0	0	0	0	logfile
✔	6XYP	10651	2022-11-29	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4955	725	10	0	0	0	0	logfile
✔	6N3C	0334	2022-11-29	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.70	0.00	2.372	12.69	1.58	8.2	91.8	0.0	-3.77	2.40	0.51	0.82	3.93	4260	640	20	0	0	0	0	logfile
✔	6Y1A	10669	2022-11-29	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile

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