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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PWE | 20506 | 2024-03-15 | 2019-07-22 | 3.95 | 4.04 | — | 4.0 | 0.010 | 0.93 | 0.0 | 0.05 | 27.12 | 0.01 | 2.264 | 5.38 | 0.00 | 7.4 | 92.3 | 0.3 | -6.65 | 0.70 | 0.80 | 2.98 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 28.08 | 0.00 | 2.063 | 12.36 | 3.40 | 4.9 | 94.9 | 0.1 | -1.46 | 1.42 | 0.70 | 0.81 | 1.51 | 11923 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6QM5 | 4588 | 2024-03-15 | 2019-02-01 | 3.6 | 3.74 | 3.61 | 3.7 | 0.007 | 0.83 | 0.0 | 0.05 | 15.76 | 0.01 | 2.311 | 4.02 | 0.00 | 4.1 | 95.9 | 0.0 | -6.65 | 0.70 | 0.85 | 2.84 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 17.00 | 0.00 | 2.171 | 6.83 | 1.64 | 3.1 | 96.9 | 0.0 | -0.73 | 0.50 | 0.70 | 0.84 | 1.93 | 10874 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2024-03-18 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.38 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.62 | 0.00 | 1.858 | 56.90 | 3.87 | 24.3 | 75.7 | 0.0 | -5.32 | 2.68 | 0.78 | 0.87 | 2.95 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✘ | 6S8N | 10125 | 2024-03-11 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.96 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 8GA3 | 29885 | 2024-03-11 | 2023-02-22 | 3.1 | 3.32 | 3.21 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 14.76 | 0.01 | 2.294 | 4.25 | 0.00 | 7.0 | 93.0 | 0.0 | -6.60 | 0.65 | 0.81 | 2.52 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 15.75 | 0.00 | 2.193 | 7.97 | 1.06 | 6.8 | 93.2 | 0.0 | -0.68 | 0.41 | 0.59 | 0.81 | 1.97 | 6590 | 886 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7DV5 | 30870 | 2024-03-14 | 2021-01-12 | 3.7 | 3.37 | — | 3.7 | 0.011 | 1.46 | 6.0 | 0.08 | 14.00 | 0.01 | 1.936 | 9.61 | 2.23 | 11.7 | 88.2 | 0.1 | -6.60 | 0.63 | 0.79 | 2.16 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.35 | 0.00 | 2.136 | 8.92 | 3.95 | 6.9 | 93.1 | 0.0 | -3.38 | 1.59 | 0.63 | 0.79 | 1.08 | 9319 | 1189 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7YKS | 33896 | 2024-03-17 | 2022-07-23 | 3.0 | 3.20 | 3.06 | 4.7 | 0.008 | 1.00 | 0.0 | 0.06 | 10.27 | 0.01 | 2.291 | 4.01 | 0.00 | 6.7 | 93.1 | 0.2 | -6.58 | 0.17 | 0.11 | -0.18 | 3.2 | 0.004 | 0.93 | 2.0 | 0.04 | 16.76 | 0.01 | 2.171 | 10.38 | 1.00 | 4.8 | 95.2 | 0.0 | -0.98 | 2.24 | 0.59 | 0.80 | 1.81 | 18984 | 2364 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2024-03-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YKP | 10829 | 2024-03-15 | 2020-04-06 | 2.98 | 3.28 | 3.05 | 3.3 | 0.014 | 1.23 | 0.0 | 0.07 | 10.75 | 0.01 | 2.350 | 2.77 | 0.09 | 3.0 | 97.0 | 0.1 | -6.56 | 0.59 | 0.85 | 4.85 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 15.31 | 0.00 | 2.265 | 7.04 | 1.76 | 2.4 | 97.5 | 0.1 | 0.71 | 1.07 | 0.60 | 0.86 | 3.15 | 10190 | 1326 | 9 | 0 | 0 | 7 | 0 | logfile |
✔ | 6JCW | 9799 | 2024-03-21 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.006 | 0.70 | 0.0 | 0.05 | 16.35 | 0.00 | 2.194 | 4.92 | 0.50 | 3.6 | 96.4 | 0.0 | -0.24 | 1.30 | 0.86 | 0.90 | 3.90 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 7L1K | 23110 | 2024-03-11 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.35 | 5.0 | 0.27 | 16.53 | 0.01 | 2.317 | 5.62 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.002 | 0.65 | 0.0 | 0.04 | 16.14 | 0.00 | 2.220 | 7.84 | 1.62 | 7.5 | 92.5 | 0.0 | -1.89 | 0.94 | 0.75 | 0.89 | 2.66 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2024-03-10 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.004 | 0.63 | 0.0 | 0.05 | 17.37 | 0.00 | 2.160 | 5.30 | 11.36 | 11.1 | 88.9 | 0.0 | -4.89 | 1.13 | 0.39 | 0.82 | 3.35 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o6R | 0636 | 2024-03-20 | 2019-03-07 | 3.2 | 3.33 | — | 3.3 | 0.010 | 1.01 | 0.0 | 0.06 | 16.65 | 0.01 | 2.114 | 7.37 | 0.00 | 7.6 | 92.4 | 0.0 | -6.54 | 0.61 | 0.79 | 2.48 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 17.09 | 0.00 | 2.199 | 11.17 | 2.02 | 7.7 | 92.3 | 0.0 | -0.86 | 0.54 | 0.60 | 0.80 | 2.21 | 27744 | 3332 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6GCT | 4386 | 2024-03-14 | 2018-04-19 | 3.85 | 3.94 | 3.80 | 3.9 | 0.012 | 1.40 | 0.0 | 0.07 | 14.50 | 0.01 | 2.330 | 6.80 | 5.57 | 5.8 | 93.9 | 0.2 | -6.53 | 0.67 | 0.83 | 1.60 | 3.9 | 0.004 | 0.98 | 0.0 | 0.05 | 15.50 | 0.00 | 2.141 | 14.30 | 5.77 | 5.2 | 94.8 | 0.0 | -2.09 | 1.27 | 0.65 | 0.82 | 1.87 | 9672 | 1299 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQF | 10550 | 2024-03-15 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.007 | 0.99 | 0.0 | 0.05 | 22.16 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 15.40 | 0.00 | 2.012 | 2.48 | 0.85 | 3.2 | 96.8 | 0.0 | -3.36 | 0.38 | 0.74 | 0.90 | 2.61 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 8GoF | 34177 | 2024-03-10 | 2022-08-24 | 3.0 | 2.97 | 3.06 | 3.1 | 0.006 | 0.80 | 0.0 | 0.05 | 13.26 | 0.01 | 2.269 | 7.05 | 0.00 | 2.5 | 97.5 | 0.0 | -6.52 | 0.44 | 0.81 | 3.59 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 14.47 | 0.00 | 2.227 | 8.10 | 0.85 | 2.2 | 97.8 | 0.0 | 1.15 | 1.48 | 0.44 | 0.82 | 2.89 | 3299 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7BSU | 30167 | 2024-03-14 | 2020-03-31 | 3.2 | 3.35 | — | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 19.32 | 0.01 | 1.626 | 31.07 | 7.59 | 7.6 | 92.4 | 0.0 | -6.52 | 0.59 | 0.85 | 3.64 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 17.12 | 0.00 | 1.978 | 9.00 | 5.71 | 4.4 | 95.6 | 0.0 | -1.55 | 0.93 | 0.64 | 0.89 | 3.39 | 9325 | 1138 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 6TQH | 10551 | 2024-03-24 | 2019-12-16 | 3.4 | 3.87 | 3.27 | 3.6 | 0.013 | 0.92 | 0.0 | 0.06 | 14.92 | 0.00 | 1.729 | 12.64 | 1.45 | 12.5 | 87.5 | 0.0 | -6.51 | 0.82 | 0.80 | 2.62 | 3.6 | 0.002 | 0.62 | 0.0 | 0.05 | 14.68 | 0.00 | 1.953 | 8.60 | 0.72 | 4.3 | 95.7 | 0.0 | -0.71 | 1.51 | 0.81 | 0.83 | 2.54 | 39677 | 2576 | 6 | 0 | 6 | 0 | 19793 | logfile |
✔ | 7U15 | 26278 | 2024-03-11 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.22 | 0.0 | 0.12 | 17.23 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.75 | 0.0 | 0.11 | 15.95 | 0.00 | 1.960 | 11.72 | 4.50 | 18.0 | 82.0 | 0.0 | -5.23 | 1.45 | 0.27 | 0.70 | 3.20 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 8GAH | 29899 | 2024-03-11 | 2023-02-22 | 2.9 | 3.08 | 2.95 | 3.1 | 0.005 | 0.88 | 0.0 | 0.05 | 13.56 | 0.01 | 2.280 | 4.27 | 0.00 | 5.9 | 94.1 | 0.0 | -6.49 | 0.65 | 0.83 | 3.19 | 3.1 | 0.004 | 0.70 | 0.0 | 0.04 | 15.43 | 0.00 | 2.187 | 9.69 | 2.34 | 4.8 | 95.2 | 0.0 | -0.06 | 0.47 | 0.63 | 0.84 | 2.90 | 6424 | 864 | 4 | 0 | 4 | 0 | 0 | logfile |