Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6JCW	9799	2023-11-20	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30888	3912	36	0	24	100	0	logfile
✔	7L1K	23110	2023-11-14	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.35	5.0	0.27	15.30	0.01	2.317	5.62	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.003	0.67	0.0	0.04	16.34	0.00	2.205	7.64	0.25	7.6	92.4	0.0	-1.95	0.94	0.76	0.90	2.83	7217	883	6	0	2	0	0	logfile
✔	6o6R	0636	2023-11-19	2019-03-07	3.2	3.33	—	3.3	0.010	1.01	0.0	0.06	15.85	0.01	2.114	7.37	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.003	0.66	0.0	0.04	16.63	0.00	2.224	11.11	0.13	8.0	92.0	0.0	-0.90	0.55	0.61	0.81	2.15	27744	3332	8	0	28	0	0	logfile
✔	7V4C	31707	2023-11-13	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile
✔	6TQF	10550	2023-11-15	2019-12-16	3.5	3.81	—	3.7	0.007	0.99	0.0	0.05	15.75	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.59	0.0	0.04	15.83	0.00	1.970	2.62	0.00	3.6	96.4	0.0	-3.38	0.38	0.74	0.90	2.77	10426	1268	4	0	14	0	0	logfile
✔	6GCT	4386	2023-11-14	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.006	1.07	0.0	0.05	15.31	0.00	2.130	16.47	0.98	5.8	94.2	0.0	-2.26	0.72	0.65	0.84	1.77	9672	1299	6	0	0	0	0	logfile
✔	7BSU	30167	2023-11-14	2020-03-31	3.2	3.35	—	3.3	0.006	0.60	0.0	0.04	17.87	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.68	0.0	0.04	16.94	0.00	2.009	8.46	0.39	4.4	95.6	0.0	-1.79	0.95	0.64	0.89	3.52	9325	1138	4	0	7	0	0	logfile
✔	8GoF	34177	2023-11-13	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	12.71	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.004	0.58	0.0	0.04	14.49	0.00	2.219	8.85	1.14	2.5	97.5	0.0	1.11	1.48	0.44	0.82	2.90	3299	407	1	0	1	0	0	logfile
✔	7U15	26278	2023-11-14	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.79	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.88	0.00	1.951	10.55	3.97	17.8	82.2	0.0	-5.33	1.84	0.27	0.71	2.91	6684	405	6	0	12	0	3255	logfile
✔	6Z7Q	11112	2023-11-16	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	6S8H	10122	2023-11-14	2019-07-10	3.7	3.89	—	3.8	0.011	1.65	0.0	0.16	17.32	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.005	0.81	0.0	0.05	18.35	0.00	2.059	11.18	0.50	8.8	91.1	0.1	-2.00	0.64	0.68	0.84	0.88	7818	959	6	0	7	0	0	logfile
✔	5o3T	3743	2023-11-15	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.66	0.0	0.05	13.08	0.00	2.112	11.27	0.00	12.0	88.0	0.0	-4.99	1.54	0.52	0.73	3.04	11360	730	10	0	0	0	5790	logfile
✔	6NCV	0438	2023-11-16	2018-12-12	3.7	3.98	—	3.9	0.008	0.94	0.0	0.05	17.27	0.01	2.398	4.87	2.74	9.1	90.9	0.0	-6.46	0.73	0.84	0.57	3.9	0.004	0.72	0.0	0.04	18.64	0.00	2.088	7.36	0.85	7.7	92.3	0.0	-0.38	1.32	0.75	0.86	1.18	15456	1911	21	0	0	0	0	logfile
✘	6X2L	22011	2023-11-14	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9396	1233	3	0	0	0	0	logfile
✔	7C1D	30269	2023-11-13	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	6LZ3	30022	2023-11-16	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	16.42	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.003	0.64	0.0	0.04	16.09	0.00	2.134	9.41	0.30	7.2	92.8	0.0	-1.94	0.68	0.80	0.83	2.69	15968	1944	8	0	4	0	0	logfile
✔	5iRX	8117	2023-11-16	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	6Kio	9996	2023-11-16	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.10	0.00	1.991	10.48	0.24	7.1	92.5	0.4	-0.92	1.67	0.65	0.77	1.26	15091	968	3	0	0	0	7442	logfile
✔	7E1A	30938	2023-11-14	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✔	8SiA	40504	2023-11-19	2023-04-14	2.91	3.13	3.00	3.1	0.013	1.24	0.0	0.09	18.88	0.01	1.993	5.03	0.72	14.5	85.0	0.5	-6.42	0.61	0.69	3.40	3.1	0.004	0.72	2.0	0.10	17.86	0.00	1.961	19.58	1.56	11.9	88.0	0.1	-2.53	1.22	0.63	0.77	2.83	74681	4420	8	0	65	0	36144	logfile

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