Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6A70	6991	2023-04-23	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.8	0.005	0.86	0.0	0.05	14.75	0.00	2.095	13.74	0.53	8.3	91.7	0.0	-1.40	1.21	0.58	0.73	0.81	15142	2086	4	0	0	0	0	logfile
✔	7SHN	25131	2023-04-21	2021-10-09	3.1	3.32	—	3.3	0.017	1.35	6.0	0.08	16.18	0.01	2.330	8.40	0.20	3.5	96.5	0.0	-6.40	0.65	0.84	2.48	3.3	0.003	0.67	0.0	0.04	16.57	0.00	2.146	10.22	0.30	3.5	96.5	0.0	0.15	0.64	0.63	0.84	1.45	9677	1171	4	0	44	0	0	logfile
✔	6LTN	0975	2023-04-22	2020-01-23	3.1	3.48	3.04	3.5	0.006	0.95	0.0	0.05	16.29	0.01	2.254	2.43	1.38	4.7	95.3	0.0	-6.39	0.65	0.79	2.98	3.4	0.003	0.71	0.0	0.04	17.09	0.01	2.224	7.90	0.07	3.8	96.2	0.0	0.14	1.65	0.65	0.80	3.05	13615	1708	7	0	0	0	0	logfile
✔	6RBG	4798	2023-04-25	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.66	0.86	1.5	98.5	0.0	0.85	0.56	0.71	0.84	2.57	19336	2464	8	0	0	0	0	logfile
✔	7N88	24233	2023-04-21	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.004	0.84	0.0	0.05	16.61	0.01	1.920	18.60	0.81	13.5	86.5	0.0	-3.78	1.20	0.73	0.71	1.51	9402	1220	2	0	4	0	0	logfile
✔	6A91	6996	2023-04-22	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	12.46	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.66	0.0	0.04	15.44	0.00	2.182	5.64	0.44	7.2	92.6	0.1	-1.04	0.73	0.65	0.86	2.56	11182	1380	6	0	10	3	0	logfile
✔	5TJ5	8409	2023-04-23	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.1	0.004	0.89	0.0	0.04	12.82	0.00	2.018	15.16	1.10	6.4	93.3	0.2	0.39	1.76	0.63	0.74	1.06	14976	2102	14	0	365	0	0	logfile
✔	5LiJ	4054	2023-04-19	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6MUP	9251	2023-04-23	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.004	0.69	0.0	0.04	26.80	0.00	2.109	12.88	0.49	8.9	91.1	0.0	-2.12	0.77	0.75	0.79	1.74	15803	1224	14	294	0	0	0	logfile
✔	6M23	30061	2023-04-23	2020-02-26	3.2	3.49	—	3.3	0.010	1.12	0.0	0.07	14.88	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.003	0.77	0.0	0.04	15.78	0.00	2.138	7.67	0.13	10.3	89.2	0.4	-1.39	0.76	0.67	0.83	2.18	14744	1872	12	0	18	2	0	logfile
✔	6YKR	10830	2023-04-21	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.66	0.0	0.04	16.02	0.00	2.274	7.67	1.02	2.4	97.6	0.0	1.06	1.15	0.67	0.88	3.55	10189	1326	9	0	0	6	0	logfile
✔	6WUN	21917	2023-04-21	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	6LR0	31583	2023-04-21	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	7CAL	30334	2023-04-23	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.52	0.01	2.265	2.29	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.003	0.73	0.0	0.04	15.59	0.00	2.257	6.17	0.93	10.6	89.1	0.2	-1.85	1.50	0.70	0.82	2.65	14064	1776	8	0	4	0	0	logfile
✔	6oVH	20212	2023-04-21	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	7DHR	30682	2023-04-20	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.61	0.0	0.04	15.36	0.00	2.231	7.99	0.77	5.7	94.3	0.0	-3.21	0.46	0.69	0.76	1.86	7057	977	5	0	1	0	0	logfile
✔	6o6A	0631	2023-04-28	2019-03-05	3.6	3.69	—	3.6	0.008	0.99	0.0	0.06	15.67	0.01	1.986	6.42	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.004	0.78	0.0	0.04	17.50	0.00	2.099	13.95	0.91	7.8	92.2	0.0	-1.00	2.51	0.62	0.78	1.17	27220	3312	8	0	8	0	0	logfile
✔	7SHM	25130	2023-04-21	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.65	0.0	0.04	16.61	0.00	2.183	8.94	0.31	4.1	95.9	0.0	0.17	0.59	0.62	0.84	2.66	9186	1142	4	0	2	0	0	logfile
✔	6TD6	10464	2023-04-23	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	15.73	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.68	0.0	0.04	14.08	0.00	1.930	17.12	0.00	9.3	90.7	0.0	-1.32	1.43	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	6F2D	4173	2023-04-22	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	13.03	0.01	2.125	12.83	0.00	7.7	91.7	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile

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