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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JCW | 9799 | 2023-11-20 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 7L1K | 23110 | 2023-11-14 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.35 | 5.0 | 0.27 | 15.30 | 0.01 | 2.317 | 5.62 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.34 | 0.00 | 2.205 | 7.64 | 0.25 | 7.6 | 92.4 | 0.0 | -1.95 | 0.94 | 0.76 | 0.90 | 2.83 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o6R | 0636 | 2023-11-19 | 2019-03-07 | 3.2 | 3.33 | — | 3.3 | 0.010 | 1.01 | 0.0 | 0.06 | 15.85 | 0.01 | 2.114 | 7.37 | 0.00 | 7.6 | 92.4 | 0.0 | -6.54 | 0.61 | 0.79 | 2.48 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.63 | 0.00 | 2.224 | 11.11 | 0.13 | 8.0 | 92.0 | 0.0 | -0.90 | 0.55 | 0.61 | 0.81 | 2.15 | 27744 | 3332 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2023-11-13 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.002 | 0.61 | 0.0 | 0.05 | 17.20 | 0.00 | 2.152 | 4.55 | 1.52 | 6.1 | 93.9 | 0.0 | -4.30 | 2.19 | 0.40 | 0.82 | 3.23 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQF | 10550 | 2023-11-15 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.007 | 0.99 | 0.0 | 0.05 | 15.75 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.83 | 0.00 | 1.970 | 2.62 | 0.00 | 3.6 | 96.4 | 0.0 | -3.38 | 0.38 | 0.74 | 0.90 | 2.77 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 6GCT | 4386 | 2023-11-14 | 2018-04-19 | 3.85 | 3.94 | 3.80 | 3.9 | 0.012 | 1.40 | 0.0 | 0.07 | 14.50 | 0.01 | 2.330 | 6.80 | 5.57 | 5.8 | 93.9 | 0.2 | -6.53 | 0.67 | 0.83 | 1.60 | 3.9 | 0.006 | 1.07 | 0.0 | 0.05 | 15.31 | 0.00 | 2.130 | 16.47 | 0.98 | 5.8 | 94.2 | 0.0 | -2.26 | 0.72 | 0.65 | 0.84 | 1.77 | 9672 | 1299 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BSU | 30167 | 2023-11-14 | 2020-03-31 | 3.2 | 3.35 | — | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 17.87 | 0.01 | 1.626 | 31.07 | 7.59 | 7.6 | 92.4 | 0.0 | -6.52 | 0.59 | 0.85 | 3.64 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.94 | 0.00 | 2.009 | 8.46 | 0.39 | 4.4 | 95.6 | 0.0 | -1.79 | 0.95 | 0.64 | 0.89 | 3.52 | 9325 | 1138 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 8GoF | 34177 | 2023-11-13 | 2022-08-24 | 3.0 | 2.97 | 3.06 | 3.1 | 0.006 | 0.80 | 0.0 | 0.05 | 12.71 | 0.01 | 2.269 | 7.05 | 0.00 | 2.5 | 97.5 | 0.0 | -6.52 | 0.44 | 0.81 | 3.59 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 14.49 | 0.00 | 2.219 | 8.85 | 1.14 | 2.5 | 97.5 | 0.0 | 1.11 | 1.48 | 0.44 | 0.82 | 2.90 | 3299 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7U15 | 26278 | 2023-11-14 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.22 | 0.0 | 0.12 | 17.79 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.74 | 0.0 | 0.11 | 17.88 | 0.00 | 1.951 | 10.55 | 3.97 | 17.8 | 82.2 | 0.0 | -5.33 | 1.84 | 0.27 | 0.71 | 2.91 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6Z7Q | 11112 | 2023-11-16 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2023-11-14 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.65 | 0.0 | 0.16 | 17.32 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.005 | 0.81 | 0.0 | 0.05 | 18.35 | 0.00 | 2.059 | 11.18 | 0.50 | 8.8 | 91.1 | 0.1 | -2.00 | 0.64 | 0.68 | 0.84 | 0.88 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 5o3T | 3743 | 2023-11-15 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 14.44 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 13.08 | 0.00 | 2.112 | 11.27 | 0.00 | 12.0 | 88.0 | 0.0 | -4.99 | 1.54 | 0.52 | 0.73 | 3.04 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6NCV | 0438 | 2023-11-16 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.64 | 0.00 | 2.088 | 7.36 | 0.85 | 7.7 | 92.3 | 0.0 | -0.38 | 1.32 | 0.75 | 0.86 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-11-14 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2023-11-13 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.63 | 0.0 | 0.05 | 14.86 | 0.00 | 2.265 | 16.18 | 2.08 | 14.6 | 85.4 | 0.0 | -4.73 | 2.82 | 0.39 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LZ3 | 30022 | 2023-11-16 | 2020-02-18 | 3.2 | 3.37 | 3.26 | 3.3 | 0.007 | 1.20 | 0.0 | 0.06 | 16.42 | 0.01 | 2.201 | 4.66 | 3.86 | 8.7 | 90.9 | 0.4 | -6.45 | 0.80 | 0.81 | 2.16 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.09 | 0.00 | 2.134 | 9.41 | 0.30 | 7.2 | 92.8 | 0.0 | -1.94 | 0.68 | 0.80 | 0.83 | 2.69 | 15968 | 1944 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2023-11-16 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.65 | 0.00 | 2.241 | 8.73 | 1.73 | 8.2 | 91.8 | 0.0 | -0.58 | 0.68 | 0.62 | 0.82 | 1.93 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2023-11-16 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.10 | 0.00 | 1.991 | 10.48 | 0.24 | 7.1 | 92.5 | 0.4 | -0.92 | 1.67 | 0.65 | 0.77 | 1.26 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 7E1A | 30938 | 2023-11-14 | 2021-02-01 | 3.66 | 4.00 | — | 3.9 | 0.012 | 1.39 | 0.0 | 0.07 | 13.29 | 0.01 | 2.233 | 7.56 | 0.81 | 11.6 | 88.3 | 0.1 | -6.43 | 0.63 | 0.78 | 1.89 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.83 | 0.00 | 2.156 | 10.94 | 0.81 | 6.8 | 93.2 | 0.0 | -3.36 | 1.35 | 0.63 | 0.78 | 1.26 | 9284 | 1189 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8SiA | 40504 | 2023-11-19 | 2023-04-14 | 2.91 | 3.13 | 3.00 | 3.1 | 0.013 | 1.24 | 0.0 | 0.09 | 18.88 | 0.01 | 1.993 | 5.03 | 0.72 | 14.5 | 85.0 | 0.5 | -6.42 | 0.61 | 0.69 | 3.40 | 3.1 | 0.004 | 0.72 | 2.0 | 0.10 | 17.86 | 0.00 | 1.961 | 19.58 | 1.56 | 11.9 | 88.0 | 0.1 | -2.53 | 1.22 | 0.63 | 0.77 | 2.83 | 74681 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |