Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5X0M	6698	2021-12-02	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✔	7LQE	23483	2021-12-01	2021-02-13	3.4	3.06	—	3.4	0.008	0.86	0.0	0.05	20.97	0.00	1.410	23.12	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.54	281.0	0.38	25.48	0.02	1.592	131.83	6.94	59.7	38.5	1.7	-8.82	1.67	0.66	0.89	2.30	6120	576	72	0	0	0	0	logfile
✔	5M5H	4155	2021-12-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.13	—	1086	132	1	0	0	0	0	logfile
✔	7ARi	11883	2021-12-01	2020-10-25	3.4	3.64	—	3.6	0.003	0.78	0.0	0.05	13.73	0.00	2.339	3.87	0.68	4.4	95.6	0.0	-5.94	0.64	0.67	0.67	3.6	0.003	0.74	0.0	0.04	16.20	0.00	2.181	9.65	0.00	4.9	95.1	0.0	-1.76	0.88	0.70	0.77	0.55	9538	1246	4	0	0	0	0	logfile
✔	6QM4	4587	2021-12-02	2019-02-01	3.8	3.88	3.83	3.8	0.007	0.99	0.0	0.05	15.63	0.01	2.242	3.99	0.00	4.8	95.2	0.0	-5.94	0.61	0.79	1.31	3.9	0.007	0.80	0.0	0.04	17.33	0.01	2.122	9.65	0.44	4.0	96.0	0.0	0.63	0.71	0.63	0.79	1.37	10580	1308	2	0	0	0	0	logfile
✔	6F36	4176	2021-12-01	2017-11-28	3.7	2.63	—	3.9	0.010	1.13	0.0	0.07	11.06	0.01	2.304	7.63	0.27	5.1	94.9	0.0	-5.92	0.82	0.70	1.42	3.8	0.003	0.73	0.0	0.04	14.88	0.00	2.170	13.11	0.80	2.4	97.6	0.0	0.25	0.89	0.83	0.72	0.93	7453	1039	12	0	0	0	0	logfile
✔	6N37	9339	2021-12-01	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	7C99	30309	2021-12-01	2020-06-05	3.36	3.44	—	3.5	0.006	0.89	0.0	0.05	16.02	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.5	0.003	0.58	0.0	0.04	18.13	0.00	2.174	6.18	0.13	5.9	94.1	0.0	-2.32	2.17	0.52	0.87	2.47	7656	927	8	18	6	0	0	logfile
✔	6MPB	9188	2021-12-01	2018-10-05	3.84	4.03	4.02	4.0	0.005	1.08	0.0	0.06	10.50	0.01	2.338	3.67	0.00	8.9	91.1	0.0	-5.90	0.71	0.78	2.00	4.0	0.003	0.88	0.0	0.04	15.39	0.00	2.105	10.72	0.86	6.5	93.5	0.0	-0.36	1.01	0.72	0.82	1.61	9969	1341	6	0	3	0	0	logfile
✔	7KXY	23067	2021-12-01	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.23	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.67	0.01	2.083	26.15	0.00	18.8	81.1	0.1	-4.97	0.60	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	6XBY	22122	2021-12-01	2020-06-07	3.79	3.90	—	3.8	0.007	1.08	21.0	0.06	15.32	0.01	1.614	7.16	0.41	5.5	94.4	0.2	-5.89	0.73	0.83	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57516	7765	37	0	15	0	0	logfile
✔	6WKW	21811	2021-12-01	2020-04-17	3.6	3.75	—	3.6	0.095	1.94	0.0	0.06	16.38	0.00	1.408	12.72	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	3.7	0.004	0.71	0.0	0.05	15.96	0.00	2.150	10.05	0.52	7.0	92.8	0.2	-2.37	0.49	0.87	0.90	3.08	10037	1319	8	0	4	0	0	logfile
✔	6oUA	20200	2021-12-01	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	4.3	0.003	0.84	0.0	0.05	14.52	0.00	2.107	10.83	0.00	13.2	86.8	0.0	-1.96	1.15	0.72	0.77	—	5208	637	3	0	0	0	0	logfile
✔	6SHS	10204	2021-12-01	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.003	0.65	0.0	0.05	12.94	0.00	2.245	6.84	0.00	16.4	83.6	0.0	-5.45	1.71	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✘	6RAJ	4777	2021-12-02	2019-04-06	3.5	3.75	3.67	3.6	0.008	1.13	0.0	0.06	14.39	0.01	1.300	4.99	0.19	3.4	96.6	0.0	-5.87	0.82	0.85	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10198	1282	5	0	4	0	0	logfile
✔	5TTP	8467	2021-12-01	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.70	—	5616	1138	2	0	0	0	0	logfile
✔	6E1o	8959	2021-12-01	2018-07-10	3.59	3.70	—	3.7	0.008	1.20	0.0	0.06	11.66	0.01	2.219	4.62	0.78	6.9	93.1	0.0	-5.85	0.66	0.82	2.30	3.6	0.004	0.69	0.0	0.04	14.83	0.00	2.190	6.96	0.39	5.4	94.6	0.0	-0.49	1.38	0.67	0.84	1.10	9784	1182	4	0	18	0	0	logfile
✔	6NY3	8980	2021-12-02	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.008	1.04	0.0	0.04	20.12	0.01	2.138	11.16	0.00	16.8	83.0	0.3	-2.41	0.40	0.67	0.81	0.87	10214	794	4	164	121	0	0	logfile
✔	6JBH	9790	2021-12-01	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	5.98	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	1.02	0.0	0.05	16.10	0.00	2.215	13.39	0.43	15.1	84.9	0.0	-2.27	1.66	0.68	0.81	1.96	8592	1062	4	0	0	0	0	logfile
✔	6Z3T	11064	2021-12-01	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.12	0.0	0.04	19.79	0.00	2.256	13.72	2.14	7.7	92.3	0.0	-1.72	0.92	0.21	0.66	1.55	3608	441	4	0	21	0	0	logfile

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