Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LZ3	30022	2023-08-14	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	16.42	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.003	0.64	0.0	0.04	16.09	0.00	2.134	9.41	0.30	7.2	92.8	0.0	-1.94	0.68	0.80	0.83	2.69	15968	1944	8	0	4	0	0	logfile
✔	7ALW	11820	2023-08-27	2020-10-07	3.7	3.77	3.62	3.7	0.010	0.96	0.0	0.05	15.64	0.00	2.150	15.88	0.98	17.3	82.4	0.3	-6.45	0.81	0.86	2.68	3.7	0.003	0.77	0.0	0.05	17.83	0.00	2.195	13.13	0.27	10.5	89.2	0.3	-2.80	1.01	0.79	0.84	1.53	50148	6192	18	0	0	0	0	logfile
✔	7E1A	30938	2023-08-11	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✔	6VXH	21437	2023-08-10	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	15.59	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.003	0.78	0.0	0.04	16.99	0.00	2.180	9.97	0.21	7.6	92.4	0.0	-2.65	0.61	0.64	0.81	—	8879	1130	4	0	3	0	0	logfile
✔	8SiA	40504	2023-08-19	2023-04-14	2.91	3.13	3.00	3.1	0.013	1.25	0.0	0.09	18.89	0.01	1.993	5.03	0.72	14.5	85.0	0.5	-6.42	0.61	0.69	3.40	3.1	0.004	0.74	2.0	0.10	18.01	0.00	2.007	20.18	1.79	12.1	87.8	0.2	-2.66	1.22	0.63	0.77	2.89	74681	4420	8	0	65	0	36144	logfile
✔	6A70	6991	2023-08-13	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.8	0.005	0.86	0.0	0.05	14.75	0.00	2.095	13.74	0.53	8.3	91.7	0.0	-1.40	1.21	0.58	0.73	0.81	15142	2086	4	0	0	0	0	logfile
✔	7SHN	25131	2023-08-11	2021-10-09	3.1	3.32	—	3.3	0.017	1.35	6.0	0.08	16.18	0.01	2.330	8.40	0.20	3.5	96.5	0.0	-6.40	0.65	0.84	2.48	3.3	0.003	0.67	0.0	0.04	16.57	0.00	2.146	10.22	0.30	3.5	96.5	0.0	0.15	0.64	0.63	0.84	1.45	9677	1171	4	0	44	0	0	logfile
✔	6LTN	0975	2023-08-13	2020-01-23	3.1	3.48	3.04	3.5	0.006	0.95	0.0	0.05	16.29	0.01	2.254	2.43	1.38	4.7	95.3	0.0	-6.39	0.65	0.79	2.98	3.4	0.003	0.71	0.0	0.04	17.09	0.01	2.224	7.90	0.07	3.8	96.2	0.0	0.14	1.65	0.65	0.80	3.05	13615	1708	7	0	0	0	0	logfile
✔	6RBG	4798	2023-08-15	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.66	0.86	1.5	98.5	0.0	0.85	0.56	0.71	0.84	2.57	19336	2464	8	0	0	0	0	logfile
✔	7N88	24233	2023-08-11	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.004	0.84	0.0	0.05	16.61	0.01	1.920	18.60	0.81	13.5	86.5	0.0	-3.78	1.20	0.73	0.71	1.51	9402	1220	2	0	4	0	0	logfile
✔	6A91	6996	2023-08-12	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	12.46	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.66	0.0	0.04	15.44	0.00	2.182	5.64	0.44	7.2	92.6	0.1	-1.04	0.73	0.65	0.86	2.56	11182	1380	6	0	10	3	0	logfile
✔	5TJ5	8409	2023-08-13	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.1	0.004	0.89	0.0	0.04	12.82	0.00	2.018	15.16	1.10	6.4	93.3	0.2	0.39	1.76	0.63	0.74	1.06	14976	2102	14	0	365	0	0	logfile
✔	6M23	30061	2023-08-13	2020-02-26	3.2	3.49	—	3.3	0.010	1.12	0.0	0.07	14.88	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.003	0.77	0.0	0.04	15.78	0.00	2.138	7.67	0.13	10.3	89.2	0.4	-1.39	0.76	0.67	0.83	2.18	14744	1872	12	0	18	2	0	logfile
✔	6MUP	9251	2023-08-14	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.004	0.69	0.0	0.04	26.80	0.00	2.109	12.88	0.49	8.9	91.1	0.0	-2.12	0.77	0.75	0.79	1.74	15803	1224	14	294	0	0	0	logfile
✔	5LiJ	4054	2023-08-09	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6WUN	21917	2023-08-11	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✘	6NEF	9357	2023-08-20	2018-12-17	3.4	3.55	—	3.5	0.021	1.83	0.0	0.07	16.56	0.01	1.696	41.21	0.04	24.1	72.2	3.7	-6.35	0.42	0.36	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29457	3663	9	0	63	0	0	logfile
✔	6YKR	10830	2023-08-11	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.66	0.0	0.04	16.02	0.00	2.274	7.67	1.02	2.4	97.6	0.0	1.06	1.15	0.67	0.88	3.55	10189	1326	9	0	0	6	0	logfile
✔	6LR0	31583	2023-08-11	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	7CAL	30334	2023-08-13	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.52	0.01	2.265	2.29	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.003	0.73	0.0	0.04	15.59	0.00	2.257	6.17	0.93	10.6	89.1	0.2	-1.85	1.50	0.70	0.82	2.65	14064	1776	8	0	4	0	0	logfile

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