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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SHN | 25131 | 2022-05-13 | 2021-10-09 | 3.1 | 3.32 | — | 3.3 | 0.017 | 1.34 | 6.0 | 0.08 | 16.25 | 0.01 | 2.330 | 8.46 | 0.20 | 3.5 | 96.5 | 0.0 | -6.40 | 0.65 | 0.84 | 2.48 | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 16.74 | 0.01 | 2.236 | 9.91 | 0.41 | 3.5 | 96.5 | 0.0 | 0.03 | 0.63 | 0.63 | 0.85 | 1.59 | 9677 | 1171 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6RBG | 4798 | 2022-05-14 | 2019-04-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.89 | 0.0 | 0.05 | 14.50 | 0.00 | 2.407 | 3.44 | 0.38 | 2.0 | 98.0 | 0.0 | -6.39 | 0.67 | 0.80 | 3.37 | 3.4 | 0.002 | 0.63 | 0.0 | 0.04 | 17.29 | 0.00 | 2.160 | 4.94 | 1.24 | 1.3 | 98.7 | 0.0 | 0.69 | 0.57 | 0.70 | 0.83 | 2.57 | 19336 | 2464 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N88 | 24233 | 2022-05-13 | 2021-06-14 | 3.7 | 3.90 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.40 | 0.01 | 1.680 | 28.96 | 0.81 | 21.4 | 78.3 | 0.2 | -6.39 | 0.74 | 0.73 | 1.71 | 3.9 | 0.005 | 0.87 | 1.0 | 0.04 | 16.65 | 0.01 | 1.934 | 16.43 | 0.41 | 13.2 | 86.8 | 0.1 | -3.51 | 0.56 | 0.72 | 0.70 | 1.39 | 9402 | 1220 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LTN | 0975 | 2022-05-13 | 2020-01-23 | 3.1 | 3.48 | 3.04 | 3.5 | 0.006 | 0.95 | 0.0 | 0.05 | 16.29 | 0.01 | 2.254 | 2.68 | 1.38 | 4.7 | 95.3 | 0.0 | -6.39 | 0.65 | 0.79 | 2.98 | 3.4 | 0.005 | 0.80 | 0.0 | 0.04 | 17.20 | 0.01 | 2.206 | 9.06 | 0.52 | 3.8 | 96.2 | 0.0 | -0.05 | 1.99 | 0.66 | 0.81 | 3.05 | 13615 | 1708 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A91 | 6996 | 2022-05-13 | 2018-07-11 | 3.2 | 3.32 | — | 3.3 | 0.009 | 1.14 | 0.0 | 0.06 | 12.44 | 0.01 | 2.238 | 6.00 | 1.22 | 7.8 | 91.6 | 0.6 | -6.38 | 0.60 | 0.82 | 4.21 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.51 | 0.00 | 2.181 | 5.23 | 0.61 | 7.1 | 92.7 | 0.1 | -1.10 | 0.72 | 0.65 | 0.86 | 2.53 | 11182 | 1380 | 4 | 0 | 10 | 3 | 0 | logfile |
✔ | 6K1H | 9906 | 2022-05-13 | 2019-05-10 | 3.52 | 3.52 | — | 3.6 | 0.007 | 1.14 | 0.0 | 0.06 | 9.94 | 0.01 | 2.051 | 6.10 | 0.75 | 10.6 | 89.4 | 0.0 | -6.37 | 0.60 | 0.77 | 2.05 | 3.5 | 0.005 | 0.83 | 0.0 | 0.04 | 15.20 | 0.00 | 2.057 | 14.03 | 0.83 | 9.5 | 90.5 | 0.0 | -2.57 | 1.68 | 0.62 | 0.80 | 1.73 | 11556 | 1533 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 5TJ5 | 8409 | 2022-05-13 | 2016-10-03 | 3.9 | 4.19 | — | 4.1 | 0.010 | 1.29 | 0.0 | 0.05 | 9.13 | 0.01 | 1.040 | 27.77 | 0.12 | 14.4 | 85.2 | 0.4 | -6.37 | 0.62 | 0.69 | 1.87 | 4.2 | 0.011 | 1.19 | 1.0 | 0.04 | 12.98 | 0.01 | 1.606 | 20.46 | 0.73 | 7.0 | 92.7 | 0.2 | 0.14 | 1.73 | 0.63 | 0.74 | 1.50 | 14976 | 2102 | 14 | 0 | 365 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2022-05-12 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.61 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.004 | 1.12 | 0.0 | 0.04 | 9.66 | 0.00 | 2.166 | 11.82 | 0.00 | 32.0 | 68.0 | 0.0 | -5.62 | 1.49 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MUP | 9251 | 2022-05-14 | 2018-10-23 | 3.5 | 3.90 | — | 3.8 | 0.013 | 1.19 | 1.0 | 0.06 | 25.79 | 0.01 | 1.379 | 7.59 | 1.08 | 10.3 | 89.2 | 0.5 | -6.36 | 0.61 | 0.61 | 2.67 | 3.8 | 0.003 | 0.68 | 0.0 | 0.03 | 26.66 | 0.00 | 2.120 | 11.57 | 0.20 | 7.9 | 92.1 | 0.0 | -1.78 | 0.79 | 0.73 | 0.78 | 1.02 | 15803 | 1224 | 14 | 294 | 0 | 0 | 0 | logfile |
✔ | 6M23 | 30061 | 2022-05-13 | 2020-02-26 | 3.2 | 3.49 | — | 3.3 | 0.010 | 1.11 | 0.0 | 0.07 | 14.80 | 0.01 | 2.216 | 8.07 | 2.32 | 10.7 | 87.8 | 1.5 | -6.36 | 0.68 | 0.79 | 2.75 | 3.4 | 0.004 | 0.77 | 0.0 | 0.04 | 15.74 | 0.00 | 2.106 | 8.38 | 0.26 | 10.6 | 88.8 | 0.5 | -1.61 | 0.76 | 0.67 | 0.83 | 2.24 | 14744 | 1872 | 12 | 0 | 18 | 2 | 0 | logfile |
✔ | 6YKR | 10830 | 2022-05-13 | 2020-04-06 | 3.0 | 3.10 | 2.86 | 3.1 | 0.004 | 0.84 | 0.0 | 0.05 | 9.41 | 0.01 | 2.314 | 2.33 | 0.00 | 2.6 | 97.4 | 0.0 | -6.35 | 0.66 | 0.85 | 5.11 | 3.1 | 0.003 | 0.67 | 0.0 | 0.04 | 16.26 | 0.00 | 2.265 | 7.76 | 0.93 | 2.4 | 97.6 | 0.0 | 1.12 | 0.80 | 0.69 | 0.88 | 3.46 | 10189 | 1326 | 9 | 0 | 0 | 6 | 0 | logfile |
✔ | 6LR0 | 31583 | 2022-05-13 | 2020-01-15 | 3.5 | 3.87 | — | 3.8 | 0.011 | 1.38 | 0.0 | 0.07 | 13.07 | 0.01 | 2.291 | 5.77 | 0.88 | 11.0 | 88.9 | 0.1 | -6.35 | 0.66 | 0.78 | 1.71 | 3.8 | 0.010 | 1.31 | 0.0 | 0.04 | 15.66 | 0.01 | 2.009 | 12.59 | 0.39 | 7.0 | 92.9 | 0.1 | -3.96 | 0.82 | 0.63 | 0.75 | 1.26 | 9576 | 1230 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WUN | 21917 | 2022-05-13 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 14.96 | 0.00 | 2.101 | 13.22 | 0.09 | 17.2 | 82.6 | 0.2 | -4.00 | 0.56 | 0.68 | 0.80 | 1.50 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oVH | 20212 | 2022-05-13 | 2019-05-07 | 2.6 | 2.81 | 2.71 | 2.8 | 0.014 | 1.10 | 0.0 | 0.04 | 17.48 | 0.01 | 1.203 | 1.15 | 4.55 | 1.0 | 99.0 | 0.0 | -6.34 | 0.75 | 0.87 | 4.63 | 2.8 | 0.002 | 0.72 | 0.0 | 0.04 | 18.70 | 0.00 | 2.068 | 2.87 | 0.19 | 0.2 | 99.8 | 0.0 | 3.27 | 0.99 | 0.77 | 0.88 | 3.42 | 10895 | 1272 | 36 | 0 | 68 | 171 | 0 | logfile |
✔ | 6V7B | 21094 | 2022-05-13 | 2019-12-08 | 3.4 | 3.51 | — | 3.4 | 0.008 | 0.84 | 0.0 | 0.05 | 16.15 | 0.01 | 2.234 | 4.03 | 0.11 | 3.1 | 96.9 | 0.0 | -6.34 | 0.58 | 0.88 | 2.82 | 3.4 | 0.006 | 0.70 | 0.0 | 0.04 | 17.39 | 0.00 | 1.990 | 11.54 | 0.84 | 3.9 | 96.1 | 0.0 | 1.40 | 1.54 | 0.58 | 0.89 | 2.15 | 58277 | 5635 | 48 | 646 | 0 | 0 | 0 | logfile |
✔ | 7CAL | 30334 | 2022-05-13 | 2020-06-09 | 3.2 | 3.36 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 14.52 | 0.01 | 2.265 | 2.29 | 0.00 | 14.0 | 85.7 | 0.2 | -6.34 | 0.71 | 0.82 | 3.61 | 3.3 | 0.004 | 0.79 | 0.0 | 0.04 | 15.70 | 0.01 | 2.248 | 6.57 | 0.43 | 10.4 | 89.4 | 0.2 | -1.45 | 1.52 | 0.69 | 0.80 | 2.63 | 14064 | 1776 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SHM | 25130 | 2022-05-13 | 2021-10-09 | 3.14 | 3.35 | — | 3.4 | 0.006 | 1.17 | 3.0 | 0.06 | 15.18 | 0.01 | 2.322 | 5.09 | 0.21 | 3.0 | 97.0 | 0.0 | -6.33 | 0.64 | 0.82 | 2.64 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.62 | 0.00 | 2.170 | 9.16 | 0.21 | 4.0 | 96.0 | 0.0 | 0.26 | 0.62 | 0.62 | 0.83 | 2.42 | 9186 | 1142 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2022-05-14 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 16.37 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.004 | 0.69 | 0.0 | 0.04 | 14.83 | 0.00 | 1.896 | 20.31 | 0.00 | 11.6 | 88.4 | 0.0 | -1.62 | 1.43 | 0.60 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 6o6A | 0631 | 2022-05-15 | 2019-03-05 | 3.6 | 3.69 | — | 3.6 | 0.008 | 0.99 | 0.0 | 0.06 | 15.67 | 0.01 | 1.986 | 6.42 | 0.00 | 7.4 | 92.6 | 0.0 | -6.33 | 0.60 | 0.77 | 2.17 | 3.6 | 0.004 | 0.76 | 1.0 | 0.04 | 17.41 | 0.00 | 2.175 | 14.06 | 0.64 | 6.9 | 93.1 | 0.0 | -1.10 | 2.52 | 0.62 | 0.78 | 1.52 | 27220 | 3312 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7DHR | 30682 | 2022-05-12 | 2020-11-17 | 3.8 | 3.96 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.18 | 0.01 | 2.329 | 4.07 | 0.31 | 9.1 | 90.8 | 0.1 | -6.33 | 0.70 | 0.77 | 3.13 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.40 | 0.00 | 2.217 | 10.65 | 0.62 | 8.0 | 92.0 | 0.0 | -3.58 | 0.42 | 0.70 | 0.77 | 2.17 | 7057 | 977 | 5 | 0 | 1 | 0 | 0 | logfile |