Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SHN	25131	2022-05-13	2021-10-09	3.1	3.32	—	3.3	0.017	1.34	6.0	0.08	16.25	0.01	2.330	8.46	0.20	3.5	96.5	0.0	-6.40	0.65	0.84	2.48	3.3	0.005	0.74	0.0	0.04	16.74	0.01	2.236	9.91	0.41	3.5	96.5	0.0	0.03	0.63	0.63	0.85	1.59	9677	1171	4	0	44	0	0	logfile
✔	6RBG	4798	2022-05-14	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.94	1.24	1.3	98.7	0.0	0.69	0.57	0.70	0.83	2.57	19336	2464	8	0	0	0	0	logfile
✔	7N88	24233	2022-05-13	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.96	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.005	0.87	1.0	0.04	16.65	0.01	1.934	16.43	0.41	13.2	86.8	0.1	-3.51	0.56	0.72	0.70	1.39	9402	1220	2	0	4	0	0	logfile
✔	6LTN	0975	2022-05-13	2020-01-23	3.1	3.48	3.04	3.5	0.006	0.95	0.0	0.05	16.29	0.01	2.254	2.68	1.38	4.7	95.3	0.0	-6.39	0.65	0.79	2.98	3.4	0.005	0.80	0.0	0.04	17.20	0.01	2.206	9.06	0.52	3.8	96.2	0.0	-0.05	1.99	0.66	0.81	3.05	13615	1708	7	0	0	0	0	logfile
✔	6A91	6996	2022-05-13	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	12.44	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.64	0.0	0.04	15.51	0.00	2.181	5.23	0.61	7.1	92.7	0.1	-1.10	0.72	0.65	0.86	2.53	11182	1380	4	0	10	3	0	logfile
✔	6K1H	9906	2022-05-13	2019-05-10	3.52	3.52	—	3.6	0.007	1.14	0.0	0.06	9.94	0.01	2.051	6.10	0.75	10.6	89.4	0.0	-6.37	0.60	0.77	2.05	3.5	0.005	0.83	0.0	0.04	15.20	0.00	2.057	14.03	0.83	9.5	90.5	0.0	-2.57	1.68	0.62	0.80	1.73	11556	1533	9	0	3	0	0	logfile
✔	5TJ5	8409	2022-05-13	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.2	0.011	1.19	1.0	0.04	12.98	0.01	1.606	20.46	0.73	7.0	92.7	0.2	0.14	1.73	0.63	0.74	1.50	14976	2102	14	0	365	0	0	logfile
✔	5LiJ	4054	2022-05-12	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.61	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.82	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6MUP	9251	2022-05-14	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.003	0.68	0.0	0.03	26.66	0.00	2.120	11.57	0.20	7.9	92.1	0.0	-1.78	0.79	0.73	0.78	1.02	15803	1224	14	294	0	0	0	logfile
✔	6M23	30061	2022-05-13	2020-02-26	3.2	3.49	—	3.3	0.010	1.11	0.0	0.07	14.80	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.004	0.77	0.0	0.04	15.74	0.00	2.106	8.38	0.26	10.6	88.8	0.5	-1.61	0.76	0.67	0.83	2.24	14744	1872	12	0	18	2	0	logfile
✔	6YKR	10830	2022-05-13	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.67	0.0	0.04	16.26	0.00	2.265	7.76	0.93	2.4	97.6	0.0	1.12	0.80	0.69	0.88	3.46	10189	1326	9	0	0	6	0	logfile
✔	6LR0	31583	2022-05-13	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.010	1.31	0.0	0.04	15.66	0.01	2.009	12.59	0.39	7.0	92.9	0.1	-3.96	0.82	0.63	0.75	1.26	9576	1230	1	0	0	0	0	logfile
✔	6WUN	21917	2022-05-13	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.83	0.0	0.04	14.96	0.00	2.101	13.22	0.09	17.2	82.6	0.2	-4.00	0.56	0.68	0.80	1.50	10082	1326	4	0	0	0	0	logfile
✔	6oVH	20212	2022-05-13	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.002	0.72	0.0	0.04	18.70	0.00	2.068	2.87	0.19	0.2	99.8	0.0	3.27	0.99	0.77	0.88	3.42	10895	1272	36	0	68	171	0	logfile
✔	6V7B	21094	2022-05-13	2019-12-08	3.4	3.51	—	3.4	0.008	0.84	0.0	0.05	16.15	0.01	2.234	4.03	0.11	3.1	96.9	0.0	-6.34	0.58	0.88	2.82	3.4	0.006	0.70	0.0	0.04	17.39	0.00	1.990	11.54	0.84	3.9	96.1	0.0	1.40	1.54	0.58	0.89	2.15	58277	5635	48	646	0	0	0	logfile
✔	7CAL	30334	2022-05-13	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.52	0.01	2.265	2.29	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.004	0.79	0.0	0.04	15.70	0.01	2.248	6.57	0.43	10.4	89.4	0.2	-1.45	1.52	0.69	0.80	2.63	14064	1776	8	0	4	0	0	logfile
✔	7SHM	25130	2022-05-13	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.64	0.0	0.04	16.62	0.00	2.170	9.16	0.21	4.0	96.0	0.0	0.26	0.62	0.62	0.83	2.42	9186	1142	4	0	2	0	0	logfile
✔	6TD6	10464	2022-05-14	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.004	0.69	0.0	0.04	14.83	0.00	1.896	20.31	0.00	11.6	88.4	0.0	-1.62	1.43	0.60	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	6o6A	0631	2022-05-15	2019-03-05	3.6	3.69	—	3.6	0.008	0.99	0.0	0.06	15.67	0.01	1.986	6.42	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.004	0.76	1.0	0.04	17.41	0.00	2.175	14.06	0.64	6.9	93.1	0.0	-1.10	2.52	0.62	0.78	1.52	27220	3312	8	0	8	0	0	logfile
✔	7DHR	30682	2022-05-12	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	4.07	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.003	0.63	0.0	0.04	15.40	0.00	2.217	10.65	0.62	8.0	92.0	0.0	-3.58	0.42	0.70	0.77	2.17	7057	977	5	0	1	0	0	logfile

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