Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PWF	20507	2023-08-13	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.91	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.003	0.65	0.0	0.04	27.03	0.00	2.125	11.76	0.11	5.0	95.0	0.0	-2.42	1.16	0.64	0.75	—	15197	1208	11	292	0	0	0	logfile
✔	6SJ6	10212	2023-08-19	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	17.17	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.78	0.0	0.04	17.22	0.01	1.839	8.44	0.51	12.8	87.2	0.0	-3.73	2.00	0.80	0.80	2.36	78296	2611	27	2697	59	0	0	logfile
✔	6oFG	20045	2023-08-12	2019-03-29	2.9	3.01	—	3.0	0.008	0.75	0.0	0.04	10.04	0.01	2.263	5.31	0.00	3.9	96.1	0.0	-6.09	0.65	0.85	4.64	3.0	0.005	0.61	0.0	0.04	14.35	0.00	2.115	7.61	3.33	2.6	97.4	0.0	4.38	0.53	0.66	0.87	3.64	10980	1404	18	0	0	0	0	logfile
✔	7M65	23689	2023-08-09	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.003	0.78	0.0	0.04	11.75	0.00	2.164	15.54	0.00	9.8	90.2	0.0	-5.71	4.56	0.51	0.70	—	2025	275	10	0	5	0	0	logfile
✔	6oY3	20221	2023-08-11	2019-05-14	4.0	4.14	—	4.1	0.009	1.10	0.0	0.06	15.73	0.01	2.285	9.49	0.40	6.9	92.9	0.2	-6.09	0.68	0.81	—	4.1	0.003	0.69	0.0	0.04	16.85	0.00	2.257	8.23	0.20	3.6	96.4	0.1	-1.51	0.51	0.68	0.80	—	9534	1188	4	0	4	0	0	logfile
✔	7RAS	24385	2023-08-16	2021-07-02	3.64	4.18	—	4.1	0.010	1.33	0.0	0.05	11.68	0.01	2.283	4.29	1.11	6.3	93.2	0.5	-6.09	0.67	0.82	2.35	4.1	0.002	0.74	0.0	0.04	15.22	0.00	2.193	11.40	0.19	4.7	95.1	0.2	-0.52	0.82	0.67	0.82	1.75	20000	2440	8	0	8	0	0	logfile
✔	7K4B	22663	2023-08-16	2020-09-15	3.1	3.39	—	3.4	0.013	1.53	0.0	0.07	16.51	0.01	2.287	4.75	0.95	8.9	91.0	0.1	-6.09	0.56	0.82	3.72	3.4	0.002	0.63	0.0	0.04	16.24	0.00	2.250	8.90	0.38	6.3	93.7	0.0	-0.56	0.61	0.61	0.86	2.25	21118	2428	8	0	62	0	0	logfile
✔	7VQQ	32092	2023-08-09	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.006	0.80	0.0	0.04	12.91	0.00	2.234	2.21	0.91	5.6	94.4	0.0	-4.97	0.28	0.48	0.87	4.95	1968	273	3	0	0	0	0	logfile
✔	6QM9	4592	2023-08-12	2019-02-01	3.6	3.72	3.65	3.7	0.005	0.89	0.0	0.05	15.52	0.01	2.275	3.74	0.00	3.2	96.8	0.0	-6.09	0.74	0.84	2.64	3.7	0.003	0.66	0.0	0.04	16.73	0.00	2.167	8.54	0.52	3.5	96.5	0.0	0.54	0.56	0.75	0.84	1.82	10878	1346	4	0	4	0	0	logfile
✔	6QQ5	4618	2023-08-12	2019-02-17	3.9	3.85	—	3.8	0.007	1.07	0.0	0.06	14.96	0.01	1.792	4.98	0.00	8.7	91.3	0.0	-6.09	0.71	0.84	3.00	3.8	0.003	0.67	0.0	0.04	16.21	0.00	2.181	7.66	0.35	6.1	93.9	0.0	-1.65	0.47	0.73	0.82	1.96	11829	1476	4	0	8	0	0	logfile
✔	7WiH	32530	2023-08-11	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	13.60	0.01	2.318	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.70	0.0	0.04	14.38	0.00	2.213	7.51	0.24	8.8	91.1	0.1	-3.33	0.51	0.77	0.78	1.76	10002	1482	4	0	4	0	0	logfile
✔	7FDV	31547	2023-08-10	2021-07-18	3.26	3.55	—	3.6	0.007	1.12	2.0	0.06	14.66	0.00	2.001	12.40	0.66	9.2	90.8	0.0	-6.08	0.70	0.82	2.52	3.6	0.003	0.74	0.0	0.04	15.56	0.00	2.121	7.19	0.44	6.2	93.8	0.0	-2.67	0.49	0.69	0.83	1.68	8508	1058	4	0	6	0	0	logfile
✔	6N24	9322	2023-08-12	2018-11-12	3.0	3.88	—	3.7	0.007	0.78	0.0	0.05	9.04	0.01	2.332	3.60	0.29	3.6	96.4	0.0	-6.07	0.73	0.84	3.71	3.8	0.004	0.65	0.0	0.04	14.25	0.00	2.098	7.33	1.80	2.1	97.9	0.0	0.21	2.31	0.63	0.72	3.01	12643	1530	5	0	0	0	0	logfile
✔	6L1U	0803	2023-08-11	2019-09-30	3.37	3.54	—	3.5	0.011	0.90	0.0	0.06	15.32	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.007	0.76	0.0	0.05	16.50	0.00	2.159	13.05	1.18	17.0	83.0	0.0	-4.98	1.98	0.48	0.85	2.64	10515	1500	15	0	0	0	0	logfile
✔	6X3E	22020	2023-08-11	2020-05-21	3.42	3.51	—	3.5	0.006	0.90	0.0	0.06	14.42	0.01	2.083	3.23	0.00	2.9	97.1	0.0	-6.06	0.60	0.87	2.34	3.5	0.003	0.69	0.0	0.04	16.09	0.00	2.039	8.61	0.29	2.6	97.4	0.0	1.10	1.11	0.63	0.89	1.47	9469	1242	4	0	3	0	0	logfile
✔	7V5C	31722	2023-08-11	2021-08-17	3.2	3.83	—	3.7	0.009	0.63	0.0	0.04	13.83	0.00	1.766	28.98	0.00	6.7	93.3	0.0	-6.06	0.66	0.86	2.72	3.7	0.003	0.67	0.0	0.04	15.91	0.00	1.919	5.74	0.21	3.3	96.7	0.0	-0.56	0.54	0.66	0.86	2.51	8916	1144	4	0	6	0	0	logfile
✔	7ASK	11895	2023-08-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	6LNi	0931	2023-08-09	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	6J5A	0670	2023-08-10	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	12.84	0.00	2.192	10.27	0.00	8.6	91.4	0.0	-1.31	1.18	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✘	6JSi	9882	2023-08-12	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile

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