Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8EKE	28200	2025-02-11	2022-09-20	3.36	3.79	3.34	3.7	0.002	0.45	0.0	0.04	10.50	0.00	2.313	5.20	2.71	2.5	97.2	0.3	-0.29	0.78	0.72	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4681	610	2	0	0	0	0	logfile
✘	8H3S	32829	2025-02-12	2022-10-09	4.9	4.75	—	7.3	0.002	0.44	0.0	0.04	9.51	0.00	2.202	10.15	2.76	7.4	92.6	0.0	-4.26	0.85	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6901	888	3	0	0	0	0	logfile
✘	8YZD	39690	2025-02-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6436	792	2	0	0	0	0	logfile
✘	7Fii	31598	2025-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	7WL8	32577	2025-02-14	2022-01-12	3.4	3.22	—	3.4	0.002	0.49	0.0	0.04	9.00	0.00	2.251	6.35	1.87	4.6	95.3	0.1	-3.89	0.83	0.80	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10198	1330	2	0	0	0	0	logfile
✘	8QRo	18621	2025-02-13	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9273	1245	6	0	9	0	0	logfile
✘	8UBW	42107	2025-02-12	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	8KEP	37163	2025-02-11	2023-08-13	2.93	2.48	3.13	2.2	0.002	0.64	0.0	0.04	8.96	0.00	2.328	4.63	2.78	8.9	91.1	0.0	-4.25	0.71	0.73	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4834	622	3	0	0	0	0	logfile
✘	8A03	15046	2025-02-11	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✘	8QHP	18415	2025-02-11	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6788	820	4	0	2	0	0	logfile
✘	8DXQ	27773	2025-02-14	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10435	2101	7	0	0	0	0	logfile
✘	7Xo9	33341	2025-02-11	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.06	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6483	793	3	0	5	0	0	logfile
✘	8FU6	29453	2025-02-13	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8834	1112	6	0	0	0	0	logfile
✘	7F62	31470	2025-02-11	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✘	7XoS	33358	2025-02-11	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3855	524	1	0	0	0	0	logfile
✘	8XoG	38528	2025-02-13	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8708	1115	6	0	0	2	0	logfile
✘	8B7Q	15899	2025-02-11	2022-09-30	4.02	4.26	3.86	4.2	0.003	0.60	0.0	0.04	9.87	0.00	2.234	4.41	2.94	3.9	95.6	0.5	0.29	0.66	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3511	441	4	0	1	0	0	logfile
✘	8PoC	17788	2025-02-11	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4924	616	4	0	0	0	0	logfile
✘	8iQ4	35657	2025-02-12	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	954	6	0	1	0	0	logfile
✘	8H7Z	34526	2025-02-11	2022-10-21	3.07	3.23	3.02	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4885	631	3	0	0	0	0	logfile

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