Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7WRi	32727	2025-02-12	2022-01-26	3.03	3.18	—	3.2	0.003	0.58	1.0	0.04	15.54	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6431	790	4	0	2	0	0	logfile
✘	7F62	31470	2025-02-11	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✘	7UGV	26497	2025-02-11	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3107	418	2	0	3	0	0	logfile
✘	8H7Z	34526	2025-02-11	2022-10-21	3.07	3.23	3.02	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4885	631	3	0	0	0	0	logfile
✘	7XBD	33103	2025-02-13	2022-03-21	3.11	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.05	0.00	2.201	6.38	0.00	4.8	95.2	0.0	-1.80	0.61	0.73	2.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8981	1153	6	0	0	0	0	logfile
✘	8EMR	28262	2025-02-12	2022-09-28	2.92	3.25	2.98	3.2	0.003	0.62	0.0	0.05	14.91	0.00	2.263	5.06	0.12	4.4	95.6	0.0	-0.58	0.74	0.79	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7685	952	4	0	6	0	0	logfile
✘	8PoC	17788	2025-02-11	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4924	616	4	0	0	0	0	logfile
✘	7NKD	12438	2025-02-14	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9555	643	8	0	0	0	4768	logfile
✘	8VUQ	43536	2025-02-13	2024-01-29	3.85	4.17	3.94	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1161	4	0	0	0	0	logfile
✘	8XoG	38528	2025-02-13	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8708	1115	6	0	0	2	0	logfile
✘	8XJW	38408	2025-02-15	2023-12-22	2.84	3.04	2.80	3.0	0.003	0.58	0.0	0.04	16.62	0.00	2.132	9.85	0.00	5.6	94.3	0.1	-0.92	0.66	0.71	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6248	690	5	31	1	6	0	logfile
✘	7XoS	33358	2025-02-11	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3855	524	1	0	0	0	0	logfile
✘	6W62	21551	2025-02-12	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	16.09	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7387	910	2	24	0	0	0	logfile
✘	8WBG	37424	2025-02-15	2023-09-09	3.2	3.51	3.33	3.6	0.003	0.58	0.0	0.04	13.02	0.00	2.197	6.61	0.17	5.0	94.9	0.1	-1.10	0.64	0.77	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10854	1357	4	0	0	0	0	logfile
✘	8F6J	28885	2025-02-14	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10472	1366	8	0	8	0	0	logfile
✘	8Eii	28157	2025-02-14	2022-09-15	3.12	3.48	3.13	3.4	0.004	0.72	0.0	0.04	15.07	0.01	2.205	9.34	0.10	5.8	94.2	0.0	-2.07	0.70	0.75	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10451	1366	9	0	9	0	0	logfile
✘	9B3K	44143	2025-02-12	2024-03-19	2.56	2.75	2.56	2.9	0.004	0.59	0.0	0.04	17.05	0.00	2.195	8.40	4.35	3.6	96.4	0.0	1.63	0.69	0.85	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6063	797	3	0	0	0	0	logfile
✘	8C07	16356	2025-02-11	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4974	644	5	0	1	0	0	logfile
✘	6VCC	21148	2025-02-12	2019-12-20	3.6	3.10	3.54	3.5	0.004	0.66	0.0	0.05	12.50	0.01	2.253	4.58	0.00	3.6	96.4	0.0	-4.54	0.53	0.68	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7572	936	12	0	0	0	0	logfile
✘	8JDA	36076	2025-02-11	2023-05-13	3.67	3.84	3.41	3.8	0.004	0.78	0.0	0.04	14.02	0.00	2.176	14.34	0.14	5.7	94.2	0.1	-1.44	0.58	0.70	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6526	848	2	0	0	0	0	logfile

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