Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7UGV	26497	2025-02-11	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3107	418	2	0	3	0	0	logfile
✘	7PiJ	13438	2025-02-12	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	6UFR	20759	2025-02-11	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4420	630	20	0	0	90	0	logfile
✘	7SWP	25478	2025-02-11	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile
✘	8WJG	37579	2025-02-11	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3952	533	1	0	0	0	0	logfile
✘	8JTT	36652	2025-02-10	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	454	2	0	1	0	0	logfile
✘	8A03	15046	2025-02-11	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✘	7DTD	30851	2025-02-14	2021-01-04	3.3	3.36	—	3.4	0.004	0.85	0.0	0.05	15.19	0.00	2.107	13.84	2.23	7.8	91.4	0.9	-3.18	0.52	0.71	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10190	1249	3	0	5	0	0	logfile
✘	8K18	36788	2025-02-11	2023-07-10	3.68	5.01	5.15	3.7	0.014	1.85	0.0	0.09	13.98	0.03	1.995	12.12	0.85	7.1	92.9	0.0	-1.91	0.53	0.34	1.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	414	3	0	0	0	0	logfile
✘	6VCC	21148	2025-02-12	2019-12-20	3.6	3.10	3.54	3.5	0.004	0.66	0.0	0.05	12.50	0.01	2.253	4.58	0.00	3.6	96.4	0.0	-4.54	0.53	0.68	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7572	936	12	0	0	0	0	logfile
✘	6Y9A	10734	2025-02-11	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5948	776	4	0	0	0	0	logfile
✘	8iU0	35713	2025-02-12	2023-03-23	2.66	2.91	2.65	2.9	0.014	1.60	0.0	0.08	18.62	0.02	2.258	6.64	0.90	3.6	96.4	0.0	-1.94	0.54	0.80	5.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7062	765	6	0	45	78	0	logfile
✘	8XSM	38622	2025-02-10	2024-01-09	3.01	3.31	3.04	3.3	0.008	0.93	0.0	0.05	13.81	0.01	2.161	5.27	1.40	3.8	96.2	0.0	-1.76	0.54	0.81	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2788	375	2	0	2	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	7XoS	33358	2025-02-11	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3855	524	1	0	0	0	0	logfile
✘	8F7E	28904	2025-02-11	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6642	814	2	0	0	0	0	logfile
✘	8QRV	18627	2025-02-10	2023-10-09	2.9	3.28	2.88	3.3	0.004	0.57	0.0	0.04	14.31	0.00	2.373	6.73	0.61	1.2	98.8	0.0	2.08	0.55	0.83	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3111	419	2	0	1	0	0	logfile
✘	9JUB	61826	2025-02-11	2024-10-07	3.1	3.29	3.10	3.4	0.007	0.79	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6479	829	5	0	5	0	0	logfile
✘	9B1K	44082	2025-02-11	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3911	512	2	0	1	0	0	logfile
✘	6C14	7328	2025-02-14	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6746	860	4	0	0	0	0	logfile

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