Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✘	5X1G	6701	2025-02-10	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	5M5H	4155	2025-02-10	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✘	8K18	36788	2025-02-11	2023-07-10	3.68	5.01	5.15	3.7	0.014	1.85	0.0	0.09	13.98	0.03	1.995	12.12	0.85	7.1	92.9	0.0	-1.91	0.53	0.34	1.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	414	3	0	0	0	0	logfile
✘	6Y9A	10734	2025-02-11	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5948	776	4	0	0	0	0	logfile
✘	7PiJ	13438	2025-02-12	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	8XBX	38232	2025-02-11	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✘	8JTT	36652	2025-02-10	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	454	2	0	1	0	0	logfile
✘	6M5V	30094	2025-02-14	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10549	1359	5	0	5	0	0	logfile
✘	8F7E	28904	2025-02-11	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6642	814	2	0	0	0	0	logfile
✘	6ZD0	11172	2025-02-12	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7962	1611	6	0	0	0	0	logfile
✘	8AZT	15771	2025-02-11	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	8WJQ	37589	2025-02-11	2023-09-26	3.8	4.16	3.84	4.3	0.010	1.47	1.0	0.07	15.62	0.02	2.216	9.81	0.48	3.6	96.4	0.0	0.80	0.41	0.60	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3999	530	2	0	1	0	0	logfile
✘	7F62	31470	2025-02-11	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6K42	9912	2025-02-13	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.24	0.01	2.288	4.50	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8816	1116	6	0	1	0	0	logfile
✘	7UWL	26835	2025-02-14	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10100	1236	16	0	22	0	0	logfile
✘	8H3S	32829	2025-02-12	2022-10-09	4.9	4.75	—	7.3	0.002	0.44	0.0	0.04	9.51	0.00	2.202	10.15	2.76	7.4	92.6	0.0	-4.26	0.85	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6901	888	3	0	0	0	0	logfile
✘	8Y91	39066	2025-02-13	2024-02-06	3.13	3.47	3.24	3.4	0.004	0.55	0.0	0.04	11.48	0.00	1.938	9.24	5.04	4.4	95.6	0.0	-1.65	0.48	0.65	1.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9072	1130	4	0	6	0	0	logfile
✘	7B6E	12053	2025-02-10	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2205	269	1	0	0	0	0	logfile

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