Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6UXB	20932	2025-02-14	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6UJA	20794	2025-02-12	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	11.59	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8224	1128	10	0	23	0	0	logfile
✘	8Q8L	18254	2025-02-11	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3405	447	6	0	0	0	0	logfile
✘	7K45	22660	2025-02-10	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.35	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3038	419	4	0	2	0	0	logfile
✘	8AZ0	15728	2025-02-10	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2180	280	20	0	10	0	0	logfile
✘	7SoA	25264	2025-02-11	2021-10-29	3.1	3.33	3.14	3.3	0.011	1.27	0.0	0.08	10.15	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3850	477	5	0	6	0	0	logfile
✘	8DXQ	27773	2025-02-14	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10435	2101	7	0	0	0	0	logfile
✘	8V6U	42999	2025-02-12	2023-12-03	3.0	2.35	—	3.0	0.011	1.67	3.0	0.09	14.06	0.01	1.999	1.24	1.31	4.1	95.8	0.1	0.40	0.83	0.79	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8211	1090	6	0	1	0	0	logfile
✘	9B1K	44082	2025-02-11	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3911	512	2	0	1	0	0	logfile
✘	8CAQ	16532	2025-02-10	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2870	375	5	0	0	0	0	logfile
✘	9C0i	45085	2025-02-12	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7676	425	5	197	2	0	0	logfile
✘	6NT9	0506	2025-02-14	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9906	1228	4	0	0	0	0	logfile
✘	7Fii	31598	2025-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	8YZD	39690	2025-02-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6436	792	2	0	0	0	0	logfile
✘	6NUR	0520	2025-02-13	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.28	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1087	5	0	2	0	0	logfile
✘	8GFV	29985	2025-02-11	2023-03-08	3.1	3.40	3.19	3.4	0.004	0.58	0.0	0.04	14.48	0.00	2.278	2.46	0.00	1.7	98.3	0.0	1.20	0.67	0.89	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6702	892	8	0	2	3	0	logfile
✘	7TRP	26100	2025-02-13	2022-01-30	2.4	3.12	2.45	2.9	0.006	0.82	0.0	0.06	11.23	0.01	2.287	2.62	0.21	2.0	98.0	0.0	-0.43	0.75	0.88	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8681	1122	6	0	2	0	0	logfile
✘	7L1U	23118	2025-02-13	2020-12-15	3.2	3.71	—	3.7	0.011	1.00	0.0	0.06	13.51	0.01	2.202	3.03	0.78	3.6	96.4	0.0	-3.21	0.67	0.85	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8723	1148	7	0	1	0	0	logfile
✘	6VTK	21380	2025-02-14	2020-02-12	2.82	3.35	—	3.3	0.005	0.82	0.0	0.05	9.13	0.01	2.016	3.10	0.00	3.2	96.8	0.0	-4.44	0.71	0.81	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10686	1338	6	0	6	0	0	logfile

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