Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	9C4o	45192	2025-02-14	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✘	8K69	36919	2025-02-12	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7744	916	6	0	18	126	0	logfile
✘	7TRP	26100	2025-02-13	2022-01-30	2.4	3.12	2.45	2.9	0.006	0.82	0.0	0.06	11.23	0.01	2.287	2.62	0.21	2.0	98.0	0.0	-0.43	0.75	0.88	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8681	1122	6	0	2	0	0	logfile
✘	8CE7	16600	2025-02-14	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8H87	34531	2025-02-12	2022-10-21	2.53	2.73	2.50	2.7	0.011	1.55	0.0	0.08	18.83	0.02	2.300	4.49	0.91	2.3	97.7	0.0	-1.32	0.58	0.79	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7083	777	6	0	48	147	0	logfile
✘	8QRo	18621	2025-02-13	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9273	1245	6	0	9	0	0	logfile
✘	9B3K	44143	2025-02-12	2024-03-19	2.56	2.75	2.56	2.9	0.004	0.59	0.0	0.04	17.05	0.00	2.195	8.40	4.35	3.6	96.4	0.0	1.63	0.69	0.85	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6063	797	3	0	0	0	0	logfile
✘	8VBE	43122	2025-02-12	2023-12-12	2.6	3.21	2.56	3.1	0.004	0.68	0.0	0.05	19.82	0.00	2.052	4.72	4.46	4.0	95.4	0.5	-0.35	0.79	0.86	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8421	931	4	39	3	0	0	logfile
✘	8H86	34530	2025-02-12	2022-10-21	2.56	2.71	2.58	2.7	0.014	1.56	0.0	0.08	18.47	0.03	2.296	6.79	0.45	4.0	96.0	0.0	-0.67	0.46	0.73	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	765	6	0	48	63	0	logfile
✘	8UBW	42107	2025-02-12	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	8CAQ	16532	2025-02-10	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2870	375	5	0	0	0	0	logfile
✘	8DLS	27514	2025-02-11	2022-07-08	2.66	3.23	2.64	3.1	0.006	0.92	0.0	0.06	12.29	0.01	2.288	4.45	0.00	4.8	95.2	0.0	-0.59	0.70	0.83	4.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4017	495	5	0	7	0	0	logfile
✘	8iU0	35713	2025-02-12	2023-03-23	2.66	2.91	2.65	2.9	0.014	1.60	0.0	0.08	18.62	0.02	2.258	6.64	0.90	3.6	96.4	0.0	-1.94	0.54	0.80	5.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7062	765	6	0	45	78	0	logfile
✘	8U54	41912	2025-02-14	2023-09-12	2.65	3.71	2.66	3.5	0.006	0.79	0.0	0.05	12.07	0.01	2.221	3.48	0.17	3.6	96.4	0.0	-1.34	0.61	0.67	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10745	1359	4	0	2	0	0	logfile
✘	7YiY	33866	2025-02-13	2022-07-18	2.7	2.84	2.66	2.8	0.008	0.98	0.0	0.06	16.23	0.01	2.205	6.16	4.77	5.2	94.2	0.6	-1.48	0.71	0.87	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9257	1164	7	0	2	0	0	logfile
✘	8W8Q	37356	2025-02-12	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8168	1044	5	0	0	0	0	logfile
✘	9BKJ	44642	2025-02-11	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6795	891	6	0	1	0	0	logfile
✘	8ZQo	60386	2025-02-11	2024-06-03	2.8	2.96	2.77	3.0	0.004	0.76	0.0	0.05	17.77	0.01	2.155	4.33	1.20	1.8	98.2	0.0	1.88	0.66	0.88	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4032	515	3	0	7	1	0	logfile

• Page 1 of 13
• next →