Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7T2G	25612	2025-02-12	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6922	898	5	0	3	8	0	logfile
✘	7UWL	26835	2025-02-14	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10100	1236	16	0	22	0	0	logfile
✘	8YZD	39690	2025-02-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6436	792	2	0	0	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	7SCJ	25036	2025-02-14	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	14.79	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✘	8DPF	27633	2025-02-12	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.74	0.0	0.06	11.29	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8160	1093	6	0	2	0	0	logfile
✘	8KFY	37208	2025-02-13	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.54	0.0	0.04	15.79	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8992	1139	6	0	1	0	0	logfile
✘	9C4o	45192	2025-02-14	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✘	8C07	16356	2025-02-11	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4974	644	5	0	1	0	0	logfile
✘	8WFS	37498	2025-02-13	2023-09-20	3.36	2.57	3.39	2.2	0.005	0.87	0.0	0.05	19.14	0.01	2.261	13.55	0.94	5.8	94.2	0.0	-1.77	0.73	0.75	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6274	808	13	0	14	0	0	logfile
✘	8KEP	37163	2025-02-11	2023-08-13	2.93	2.48	3.13	2.2	0.002	0.64	0.0	0.04	8.96	0.00	2.328	4.63	2.78	8.9	91.1	0.0	-4.25	0.71	0.73	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4834	622	3	0	0	0	0	logfile
✘	5M5H	4155	2025-02-10	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✘	8K69	36919	2025-02-12	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7744	916	6	0	18	126	0	logfile
✘	8CE7	16600	2025-02-14	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8CAQ	16532	2025-02-10	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2870	375	5	0	0	0	0	logfile
✘	8H86	34530	2025-02-12	2022-10-21	2.56	2.71	2.58	2.7	0.014	1.56	0.0	0.08	18.47	0.03	2.296	6.79	0.45	4.0	96.0	0.0	-0.67	0.46	0.73	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	765	6	0	48	63	0	logfile
✘	8H87	34531	2025-02-12	2022-10-21	2.53	2.73	2.50	2.7	0.011	1.55	0.0	0.08	18.83	0.02	2.300	4.49	0.91	2.3	97.7	0.0	-1.32	0.58	0.79	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7083	777	6	0	48	147	0	logfile
✘	6UFR	20759	2025-02-11	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4420	630	20	0	0	90	0	logfile
✘	7YiY	33866	2025-02-13	2022-07-18	2.7	2.84	2.66	2.8	0.008	0.98	0.0	0.06	16.23	0.01	2.205	6.16	4.77	5.2	94.2	0.6	-1.48	0.71	0.87	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9257	1164	7	0	2	0	0	logfile
✘	9C0i	45085	2025-02-12	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7676	425	5	197	2	0	0	logfile

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