Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✘	8JTT	36652	2025-02-10	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	454	2	0	1	0	0	logfile
✘	8WJQ	37589	2025-02-11	2023-09-26	3.8	4.16	3.84	4.3	0.010	1.47	1.0	0.07	15.62	0.02	2.216	9.81	0.48	3.6	96.4	0.0	0.80	0.41	0.60	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3999	530	2	0	1	0	0	logfile
✘	7F62	31470	2025-02-11	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✘	8JDA	36076	2025-02-11	2023-05-13	3.67	3.84	3.41	3.8	0.004	0.78	0.0	0.04	14.02	0.00	2.176	14.34	0.14	5.7	94.2	0.1	-1.44	0.58	0.70	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6526	848	2	0	0	0	0	logfile
✘	8Q85	18247	2025-02-14	2023-08-17	3.97	4.11	3.83	3.9	0.004	0.92	0.0	0.05	17.20	0.01	2.146	18.47	0.53	2.9	97.1	0.0	1.93	0.61	0.75	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10299	1436	12	0	0	0	0	logfile
✘	8U54	41912	2025-02-14	2023-09-12	2.65	3.71	2.66	3.5	0.006	0.79	0.0	0.05	12.07	0.01	2.221	3.48	0.17	3.6	96.4	0.0	-1.34	0.61	0.67	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10745	1359	4	0	2	0	0	logfile
✘	6W62	21551	2025-02-12	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	16.09	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7387	910	2	24	0	0	0	logfile
✘	8XH7	38343	2025-02-12	2023-12-17	3.52	3.84	3.46	3.9	0.005	0.91	0.0	0.06	14.93	0.00	2.376	7.40	2.17	4.5	95.5	0.0	2.45	0.57	0.77	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7902	966	6	0	0	0	0	logfile
✘	7V6Z	31754	2025-02-12	2021-08-20	3.64	3.89	—	3.9	0.012	1.67	6.0	0.11	14.34	0.01	2.282	9.81	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7082	1008	3	0	6	0	0	logfile
✘	8K18	36788	2025-02-11	2023-07-10	3.68	5.01	5.15	3.7	0.014	1.85	0.0	0.09	13.98	0.03	1.995	12.12	0.85	7.1	92.9	0.0	-1.91	0.53	0.34	1.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	414	3	0	0	0	0	logfile
✘	8VUQ	43536	2025-02-13	2024-01-29	3.85	4.17	3.94	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1161	4	0	0	0	0	logfile
✘	9B3o	44147	2025-02-10	2024-03-19	3.18	3.36	3.13	3.3	0.003	0.60	0.0	0.04	16.77	0.00	2.295	10.17	0.00	2.5	97.5	0.0	2.11	0.61	0.85	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2630	363	1	0	0	0	0	logfile
✘	8Y91	39066	2025-02-13	2024-02-06	3.13	3.47	3.24	3.4	0.004	0.55	0.0	0.04	11.48	0.00	1.938	9.24	5.04	4.4	95.6	0.0	-1.65	0.48	0.65	1.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9072	1130	4	0	6	0	0	logfile
✘	8iKG	35511	2025-02-12	2023-02-28	3.4	3.67	3.39	3.7	0.005	0.71	1.0	0.04	13.86	0.00	2.225	11.28	0.34	4.7	95.3	0.0	-0.19	0.63	0.76	1.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8456	1098	6	0	1	0	0	logfile
✘	7SWP	25478	2025-02-11	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile
✘	7UWL	26835	2025-02-14	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10100	1236	16	0	22	0	0	logfile
✘	8Z7Y	39832	2025-02-10	2024-04-21	3.02	3.16	2.95	3.2	0.013	0.80	0.0	0.04	16.15	0.00	2.215	10.80	0.00	2.6	97.4	0.0	1.07	0.48	0.67	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3083	382	2	0	1	0	0	logfile
✘	8WFS	37498	2025-02-13	2023-09-20	3.36	2.57	3.39	2.2	0.005	0.87	0.0	0.05	19.14	0.01	2.261	13.55	0.94	5.8	94.2	0.0	-1.77	0.73	0.75	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6274	808	13	0	14	0	0	logfile
✘	8EM2	28232	2025-02-12	2022-09-26	3.02	3.25	3.03	3.2	0.004	0.82	0.0	0.05	17.86	0.01	2.233	6.51	0.48	4.2	95.8	0.0	-1.92	0.64	0.66	1.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8022	1002	4	0	2	0	0	logfile

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