Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8UNS	42415	2025-02-11	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✘	8XZG	38795	2025-02-12	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7172	919	5	0	0	0	0	logfile
✘	9C4o	45192	2025-02-14	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✘	8FQ3	29376	2025-02-12	2023-01-05	3.17	2.87	3.07	3.0	0.015	0.70	0.0	0.06	17.77	0.00	2.185	8.98	0.00	2.7	97.3	0.0	-0.25	0.56	0.74	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8386	1064	16	0	4	4	0	logfile
✘	8H3S	32829	2025-02-12	2022-10-09	4.9	4.75	—	7.3	0.002	0.44	0.0	0.04	9.51	0.00	2.202	10.15	2.76	7.4	92.6	0.0	-4.26	0.85	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6901	888	3	0	0	0	0	logfile
✘	8GFV	29985	2025-02-11	2023-03-08	3.1	3.40	3.19	3.4	0.004	0.58	0.0	0.04	14.48	0.00	2.278	2.46	0.00	1.7	98.3	0.0	1.20	0.67	0.89	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6702	892	8	0	2	3	0	logfile
✘	8iQ4	35657	2025-02-12	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	954	6	0	1	0	0	logfile
✘	8W8Q	37356	2025-02-12	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8168	1044	5	0	0	0	0	logfile
✘	8Uo1	42424	2025-02-12	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6915	1006	6	0	3	0	0	logfile
✘	8XJW	38408	2025-02-15	2023-12-22	2.84	3.04	2.80	3.0	0.003	0.58	0.0	0.04	16.62	0.00	2.132	9.85	0.00	5.6	94.3	0.1	-0.92	0.66	0.71	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6248	690	5	31	1	6	0	logfile
✘	8H7Z	34526	2025-02-11	2022-10-21	3.07	3.23	3.02	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4885	631	3	0	0	0	0	logfile
✘	8KFY	37208	2025-02-13	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.54	0.0	0.04	15.79	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8992	1139	6	0	1	0	0	logfile
✘	8GFX	29987	2025-02-11	2023-03-08	3.0	3.31	3.10	3.3	0.004	0.53	0.0	0.04	13.47	0.00	2.248	3.22	0.00	2.2	97.8	0.0	0.67	0.64	0.88	4.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6725	896	6	0	2	1	0	logfile
✘	8QRo	18621	2025-02-13	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9273	1245	6	0	9	0	0	logfile
✘	9FEE	50339	2025-02-13	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9112	1236	4	0	0	0	0	logfile
✘	8XoG	38528	2025-02-13	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8708	1115	6	0	0	2	0	logfile
✘	8JDA	36076	2025-02-11	2023-05-13	3.67	3.84	3.41	3.8	0.004	0.78	0.0	0.04	14.02	0.00	2.176	14.34	0.14	5.7	94.2	0.1	-1.44	0.58	0.70	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6526	848	2	0	0	0	0	logfile
✘	8PoC	17788	2025-02-11	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4924	616	4	0	0	0	0	logfile
✘	8F6R	28889	2025-02-14	2022-11-17	4.0	4.17	3.97	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1314	6	0	0	0	0	logfile
✘	8UBW	42107	2025-02-12	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile

• Page 1 of 13
• next →