Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7UGV	26497	2025-02-11	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3107	418	2	0	3	0	0	logfile
✘	8XBX	38232	2025-02-11	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✘	7Fii	31598	2025-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	8QHP	18415	2025-02-11	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6788	820	4	0	2	0	0	logfile
✘	8QRV	18627	2025-02-10	2023-10-09	2.9	3.28	2.88	3.3	0.004	0.57	0.0	0.04	14.31	0.00	2.373	6.73	0.61	1.2	98.8	0.0	2.08	0.55	0.83	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3111	419	2	0	1	0	0	logfile
✘	8XoA	38524	2025-02-10	2023-12-31	3.03	3.24	3.01	3.3	0.007	1.00	1.0	0.06	11.52	0.01	2.346	6.05	0.00	1.3	98.7	0.0	0.90	0.57	0.77	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2713	376	2	0	1	0	0	logfile
✘	3J9S	6272	2025-02-14	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✘	8UBW	42107	2025-02-12	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	9C0i	45085	2025-02-12	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7676	425	5	197	2	0	0	logfile
✘	8F6R	28889	2025-02-14	2022-11-17	4.0	4.17	3.97	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1314	6	0	0	0	0	logfile
✘	6NUR	0520	2025-02-13	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.28	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1087	5	0	2	0	0	logfile
✘	8QRo	18621	2025-02-13	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9273	1245	6	0	9	0	0	logfile
✘	7XoS	33358	2025-02-11	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3855	524	1	0	0	0	0	logfile
✘	8W8Q	37356	2025-02-12	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8168	1044	5	0	0	0	0	logfile
✘	8KFY	37208	2025-02-13	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.54	0.0	0.04	15.79	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8992	1139	6	0	1	0	0	logfile
✘	7NKD	12438	2025-02-14	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9555	643	8	0	0	0	4768	logfile
✘	8GFV	29985	2025-02-11	2023-03-08	3.1	3.40	3.19	3.4	0.004	0.58	0.0	0.04	14.48	0.00	2.278	2.46	0.00	1.7	98.3	0.0	1.20	0.67	0.89	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6702	892	8	0	2	3	0	logfile
✘	9C4o	45192	2025-02-14	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✘	8DPF	27633	2025-02-12	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.74	0.0	0.06	11.29	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8160	1093	6	0	2	0	0	logfile
✘	8HG0	34730	2025-02-11	2022-11-13	3.51	4.44	3.51	3.7	0.003	0.61	0.0	0.04	17.58	0.00	2.098	7.93	1.15	1.8	98.1	0.1	0.06	0.85	0.80	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6470	790	4	0	4	0	0	logfile

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