Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7LLL	23425	2025-02-13	2021-02-04	3.7	3.48	3.62	3.7	0.006	0.90	0.0	0.06	13.68	0.01	2.124	8.45	0.11	7.1	92.9	0.0	-4.22	0.68	0.82	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8940	1153	6	0	0	0	0	logfile
✘	7WRi	32727	2025-02-12	2022-01-26	3.03	3.18	—	3.2	0.003	0.58	1.0	0.04	15.54	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6431	790	4	0	2	0	0	logfile
✘	6HRE	0259	2025-02-11	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3522	462	6	0	0	0	0	logfile
✘	7WSC	32753	2025-02-11	2022-01-28	3.78	4.01	—	4.0	0.013	1.67	5.0	0.10	15.34	0.01	1.600	41.09	4.99	14.7	81.6	3.6	-4.09	0.65	0.78	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3369	422	4	0	2	0	0	logfile
✘	8oDV	16819	2025-02-12	2023-03-09	4.7	4.86	4.41	4.7	0.007	1.10	0.0	0.05	14.06	0.01	2.192	25.76	0.00	4.6	95.4	0.0	-4.04	0.71	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8233	1022	5	0	1	0	0	logfile
✘	7W2Z	32268	2025-02-13	2021-11-24	2.8	3.01	—	3.0	0.009	1.13	1.0	0.06	14.81	0.01	2.078	8.01	0.82	3.6	96.3	0.1	-4.01	0.60	0.80	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9080	1154	8	0	3	0	0	logfile
✘	6TAR	10425	2025-02-11	2019-10-30	2.8	2.81	—	3.7	0.005	0.91	0.0	0.06	14.53	0.01	2.319	5.38	0.69	8.5	91.5	0.0	-3.91	0.62	0.81	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6715	820	5	0	0	0	0	logfile
✘	7WL8	32577	2025-02-14	2022-01-12	3.4	3.22	—	3.4	0.002	0.49	0.0	0.04	9.00	0.00	2.251	6.35	1.87	4.6	95.3	0.1	-3.89	0.83	0.80	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10198	1330	2	0	0	0	0	logfile
✘	7B6E	12053	2025-02-10	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2205	269	1	0	0	0	0	logfile
✘	6R3Q	4719	2025-02-14	2019-03-20	3.4	3.77	—	3.5	0.011	1.24	0.0	0.07	12.61	0.01	2.080	5.88	0.58	6.7	93.3	0.0	-3.70	0.79	0.81	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9529	1182	3	0	2	0	0	logfile
✘	7FJQ	31627	2025-02-12	2021-08-04	3.6	3.86	—	3.8	0.019	2.03	44.0	0.17	13.67	0.01	1.980	10.56	6.77	10.2	88.1	1.7	-3.67	0.64	0.75	1.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7086	973	2	0	1	0	0	logfile
✘	8CE7	16600	2025-02-14	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8CAQ	16532	2025-02-10	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2870	375	5	0	0	0	0	logfile
✘	7KMB	22922	2025-02-11	2020-11-02	3.39	3.84	3.64	3.7	0.004	0.74	0.0	0.05	14.63	0.00	2.298	3.86	0.00	4.8	95.2	0.0	-3.57	0.77	0.80	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6509	788	5	0	9	0	0	logfile
✘	6DDE	7868	2025-02-13	2018-05-10	3.5	4.11	—	4.1	0.006	1.03	0.0	0.06	10.87	0.01	2.242	6.97	0.46	6.9	93.0	0.1	-3.56	0.72	0.74	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8489	1122	8	0	2	0	0	logfile
✘	8F7E	28904	2025-02-11	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6642	814	2	0	0	0	0	logfile
✘	7PiJ	13438	2025-02-12	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	7L1U	23118	2025-02-13	2020-12-15	3.2	3.71	—	3.7	0.011	1.00	0.0	0.06	13.51	0.01	2.202	3.03	0.78	3.6	96.4	0.0	-3.21	0.67	0.85	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8723	1148	7	0	1	0	0	logfile
✘	7DTD	30851	2025-02-14	2021-01-04	3.3	3.36	—	3.4	0.004	0.85	0.0	0.05	15.19	0.00	2.107	13.84	2.23	7.8	91.4	0.9	-3.18	0.52	0.71	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10190	1249	3	0	5	0	0	logfile
✘	7T2H	25613	2025-02-13	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.53	0.0	0.04	14.19	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8677	1119	6	0	1	0	0	logfile

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