Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8DP0	27627	2024-09-24	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8894	1104	2	0	0	0	0	logfile
✘	8JMM	36423	2024-09-28	2023-06-05	3.75	8.01	3.82	3.2	0.002	0.50	0.0	0.04	8.68	0.00	2.196	6.60	3.80	3.7	96.3	0.0	-3.47	0.68	0.41	0.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70631	9100	18	0	0	0	0	logfile
✘	8GFZ	29989	2024-09-24	2023-03-08	3.0	3.28	3.08	3.3	0.003	0.50	0.0	0.04	13.53	0.00	2.201	2.21	0.00	1.7	98.3	0.0	0.72	0.65	0.88	4.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6744	891	6	0	2	5	0	logfile
✘	8RAS	19023	2024-09-25	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57315	6830	45	81	4	254	0	logfile
✘	7C8K	30306	2024-09-24	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.49	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4853	596	3	0	6	0	0	logfile
✘	8F7C	28902	2024-09-27	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15925	2009	7	0	0	0	0	logfile
✘	7C8D	30305	2024-09-25	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.03	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6359	792	3	0	1	0	0	logfile
✘	8HC5	34652	2024-09-26	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11400	1493	6	0	1	0	0	logfile
✘	7ZWC	14996	2024-09-26	2022-05-19	3.2	3.57	3.12	3.3	0.003	0.53	0.0	0.04	18.42	0.00	2.067	7.82	0.00	3.7	96.3	0.0	1.08	0.74	0.80	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13944	1500	11	83	2	0	0	logfile
✘	6RKV	4912	2024-09-27	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	13.18	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	8DAN	27271	2024-09-28	2022-06-13	4.74	5.06	4.76	5.0	0.003	0.53	0.0	0.04	13.83	0.00	1.929	10.23	0.00	4.5	95.5	0.0	-0.75	0.65	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68968	4472	24	0	12	0	33968	logfile
✘	8D85	27247	2024-09-24	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.53	0.0	0.04	19.55	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7093	865	10	0	11	0	0	logfile
✘	7XNo	33321	2024-09-27	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.53	0.0	0.04	12.89	0.00	2.215	5.72	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15888	2085	15	0	3	0	0	logfile
✘	8oZE	17306	2024-09-26	2023-05-09	2.91	3.20	3.05	3.2	0.003	0.55	0.0	0.04	17.98	0.00	2.128	9.17	0.00	6.7	93.0	0.3	-0.72	0.72	0.77	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13434	1448	8	74	0	0	0	logfile
✘	8A3B	15110	2024-09-26	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14448	1792	7	0	0	0	0	logfile
✘	8DXN	27770	2024-09-27	2022-08-02	3.4	3.71	3.47	3.7	0.003	0.55	0.0	0.04	15.09	0.00	2.166	5.09	0.00	7.1	92.9	0.0	0.69	0.70	0.78	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17499	2101	7	0	0	0	0	logfile
✘	8oRS	17131	2024-09-25	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10124	1298	4	0	2	0	0	logfile
✘	8HFL	34722	2024-09-23	2022-11-11	3.0	3.38	3.09	3.3	0.003	0.55	1.0	0.04	15.47	0.00	1.981	5.43	1.72	2.7	97.1	0.2	1.46	0.60	0.82	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4441	553	2	0	2	3	0	logfile
✘	6V6B	21067	2024-09-25	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9115	1111	2	0	0	0	0	logfile
✘	7ZHJ	14733	2024-09-29	2022-04-06	3.53	3.10	3.39	3.3	0.003	0.55	0.0	0.04	13.02	0.00	2.151	8.47	0.04	3.6	96.4	0.0	-1.71	0.73	0.78	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74346	9528	33	0	0	0	0	logfile

• ← previous
• Page 2 of 34
• next →