Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8U63	41942	2024-09-24	2023-09-13	3.01	2.25	2.99	2.0	0.003	0.56	0.0	0.04	17.94	0.00	2.151	8.88	0.48	2.8	97.2	0.0	-0.74	0.77	0.79	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7758	984	4	0	2	0	0	logfile
✘	8ZAN	39881	2024-09-23	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3938	492	4	0	2	0	0	logfile
✘	7Y5A	33614	2024-09-30	2022-06-16	3.5	4.25	3.40	3.6	0.003	0.60	0.0	0.04	15.01	0.00	1.986	6.54	0.04	2.7	97.3	0.0	0.45	0.90	0.85	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23975	3164	12	0	10	0	0	logfile
✘	8GEA	29962	2024-09-24	2023-03-06	3.5	3.84	3.59	3.8	0.003	0.48	0.0	0.04	12.73	0.00	2.269	6.68	0.00	2.1	97.9	0.0	1.14	0.69	0.81	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6551	902	5	0	1	0	0	logfile
✘	8ZAQ	39884	2024-09-24	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6449	776	9	0	27	36	0	logfile
✘	8oRS	17131	2024-09-25	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10124	1298	4	0	2	0	0	logfile
✘	8HFL	34722	2024-09-23	2022-11-11	3.0	3.38	3.09	3.3	0.003	0.55	1.0	0.04	15.47	0.00	1.981	5.43	1.72	2.7	97.1	0.2	1.46	0.60	0.82	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4441	553	2	0	2	3	0	logfile
✘	8XQ9	38570	2024-09-25	2024-01-04	3.77	2.79	3.79	2.7	0.003	0.71	0.0	0.04	14.17	0.01	2.293	4.12	4.48	2.1	97.9	0.0	-1.10	0.68	0.71	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10672	1366	2	0	0	0	0	logfile
✘	9FFF	50355	2024-09-27	2024-05-23	3.68	4.27	3.58	2.7	0.003	0.65	0.0	0.04	20.68	0.00	2.128	11.90	0.67	4.4	95.5	0.1	0.95	0.83	0.72	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15045	2069	4	65	0	0	0	logfile
✘	8GE9	29961	2024-09-24	2023-03-06	3.5	3.79	3.53	3.8	0.003	0.56	0.0	0.04	13.04	0.00	2.215	7.69	0.00	1.7	98.3	0.0	1.38	0.70	0.82	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6519	900	5	0	1	1	0	logfile
✘	7TC0	25803	2024-09-26	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13809	1781	4	0	11	0	0	logfile
✘	8ZAP	39883	2024-09-24	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6442	776	9	0	27	36	0	logfile
✘	8WNS	37671	2024-09-24	2023-10-06	3.42	3.80	3.55	3.7	0.003	0.65	0.0	0.04	16.66	0.00	2.207	10.68	0.39	4.0	96.0	0.0	1.29	0.64	0.77	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7226	924	3	0	4	0	0	logfile
✘	8VKE	43315	2024-09-24	2024-01-09	3.1	3.35	3.10	3.3	0.003	0.59	0.0	0.04	14.19	0.00	2.103	5.82	0.14	2.6	97.4	0.0	-0.05	0.77	0.85	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6652	854	8	0	2	0	0	logfile
✘	8HQ7	34946	2024-09-25	2022-12-13	2.7	2.88	2.96	2.8	0.003	0.72	0.0	0.05	12.54	0.01	2.131	5.95	0.00	4.8	95.2	0.0	0.23	0.77	0.85	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8292	1082	6	0	2	0	0	logfile
✘	8J89	36064	2024-09-26	2023-05-01	2.31	3.12	2.39	2.9	0.003	0.46	0.0	0.04	10.98	0.00	2.215	5.85	0.15	3.6	96.4	0.0	0.51	0.82	0.89	4.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12222	1502	2	0	0	0	0	logfile
✘	8HQS	34953	2024-09-29	2022-12-14	3.2	3.55	3.31	3.4	0.003	0.57	0.0	0.04	11.43	0.00	2.203	11.20	0.60	5.2	94.8	0.0	0.73	0.63	0.59	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19224	2387	7	0	0	0	0	logfile
✘	9ASo	43821	2024-09-25	2024-02-26	2.9	3.56	2.94	3.1	0.003	0.60	0.0	0.05	17.62	0.00	2.281	3.38	1.04	1.6	98.4	0.0	1.28	0.80	0.66	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9426	966	6	71	4	2	0	logfile
✘	7C8D	30305	2024-09-25	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.03	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6359	792	3	0	1	0	0	logfile
✘	8C21	16387	2024-09-26	2022-12-21	3.6	4.19	3.27	3.8	0.003	0.58	0.0	0.04	14.61	0.00	2.223	10.61	0.07	5.2	94.4	0.4	0.00	0.65	0.67	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11954	1441	6	0	2	0	0	logfile

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