Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8BXF	16317	2024-09-26	2022-12-08	3.4	3.97	3.47	3.9	0.004	0.95	0.0	0.06	13.47	0.01	1.507	5.27	0.38	4.3	95.7	0.0	-2.13	0.67	0.81	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12692	1630	10	0	5	0	0	logfile
✘	8J6i	36005	2024-09-24	2023-04-26	2.92	2.81	2.83	3.0	0.006	0.63	0.0	0.04	16.60	0.01	2.167	8.17	0.00	3.7	96.2	0.1	1.37	0.53	0.71	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8801	1131	6	0	1	0	0	logfile
✘	9CX6	45979	2024-09-23	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✘	6XXD	10647	2024-09-26	2020-01-27	3.22	2.31	—	3.1	0.007	1.05	0.0	0.06	11.45	0.00	2.033	2.40	0.00	5.7	94.3	0.0	-2.51	0.70	0.68	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14896	2000	16	0	0	0	0	logfile
✘	8JMM	36423	2024-09-28	2023-06-05	3.75	8.01	3.82	3.2	0.002	0.50	0.0	0.04	8.68	0.00	2.196	6.60	3.80	3.7	96.3	0.0	-3.47	0.68	0.41	0.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70631	9100	18	0	0	0	0	logfile
✘	8H4L	34480	2024-09-24	2022-10-10	3.07	2.31	3.09	3.0	0.007	0.90	0.0	0.05	12.79	0.01	2.069	4.07	0.23	4.4	95.6	0.0	-0.34	0.77	0.81	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8171	1059	6	0	1	0	0	logfile
✘	8DUL	27722	2024-09-26	2022-07-27	4.17	4.34	4.24	4.7	0.005	1.04	0.0	0.07	13.09	0.02	2.317	6.11	0.06	5.3	94.7	0.0	-2.03	0.56	0.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14203	1802	15	0	10	0	0	logfile
✘	8AZT	15771	2024-09-23	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	7Y1F	33562	2024-09-24	2022-06-08	3.3	3.13	3.30	3.3	0.007	1.12	0.0	0.06	13.79	0.01	2.215	9.10	0.00	6.7	93.3	0.0	-2.25	0.55	0.71	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8691	1131	6	0	0	0	0	logfile
✘	8VBA	43118	2024-09-25	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✘	8X2L	38016	2024-09-24	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7099	885	6	0	9	1	0	logfile
✘	7YiY	33866	2024-09-25	2022-07-18	2.7	2.84	2.66	2.8	0.008	0.98	0.0	0.06	16.23	0.01	2.205	6.16	4.77	5.2	94.2	0.6	-1.48	0.71	0.87	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9257	1164	7	0	2	0	0	logfile
✘	8ZAo	39882	2024-09-24	2024-04-25	2.6	3.07	2.73	3.0	0.003	0.57	0.0	0.04	15.64	0.01	1.601	7.52	1.64	1.2	98.8	0.0	1.98	0.53	0.85	5.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6432	777	9	0	18	30	0	logfile
✘	8SL0	40570	2024-09-23	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✘	8Gi2	40060	2024-09-28	2023-03-13	3.0	3.25	3.18	3.3	0.008	0.98	0.0	0.05	11.48	0.00	1.504	31.63	3.45	13.0	86.3	0.7	-3.41	0.55	0.82	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20820	2940	20	0	0	0	0	logfile
✘	8JWi	36684	2024-09-25	2023-06-29	2.94	3.38	3.21	3.4	0.005	0.81	0.0	0.04	9.61	0.00	2.035	1.42	0.00	6.7	93.3	0.0	-3.73	0.65	0.78	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9431	1164	2	0	4	0	0	logfile
✘	8DZP	27804	2024-09-24	2022-08-08	2.71	2.09	2.70	1.9	0.004	0.68	0.0	0.05	13.62	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1120	6	0	1	0	0	logfile
✘	8H87	34531	2024-09-24	2022-10-21	2.53	2.73	2.50	2.7	0.011	1.55	0.0	0.08	18.83	0.02	2.300	4.49	0.91	2.3	97.7	0.0	-1.32	0.58	0.79	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7083	777	6	0	48	147	0	logfile
✘	8KA8	37006	2024-09-24	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6481	790	5	0	7	0	0	logfile
✘	6XXE	10648	2024-09-26	2020-01-27	3.49	2.31	—	3.3	0.007	1.09	0.0	0.06	11.82	0.00	2.033	6.11	2.27	11.0	89.0	0.0	-4.99	0.62	0.57	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12816	1776	16	0	0	0	0	logfile

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