Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8KEF	37154	2024-09-27	2023-08-11	3.44	3.70	3.36	3.5	0.015	1.90	30.0	0.11	14.96	0.01	1.989	8.10	1.44	6.0	94.0	0.0	-0.51	0.45	0.73	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17802	2226	12	0	0	0	0	logfile
✘	8T3Q	41008	2024-09-25	2023-06-07	3.14	3.59	3.25	3.6	0.008	1.15	2.0	0.07	14.66	0.01	2.144	11.89	1.75	4.3	95.6	0.1	-1.14	0.45	0.67	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9035	1159	6	0	1	0	0	logfile
✘	8H86	34530	2024-09-24	2022-10-21	2.56	2.71	2.58	2.7	0.014	1.56	0.0	0.08	18.47	0.03	2.296	6.79	0.45	4.0	96.0	0.0	-0.67	0.46	0.73	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	765	6	0	48	63	0	logfile
✘	7CKY	30394	2024-09-26	2020-07-20	3.2	3.28	—	3.3	0.003	0.48	0.0	0.04	14.49	0.00	2.154	17.29	1.51	4.3	95.7	0.0	-2.84	0.46	0.50	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8128	1038	6	0	2	0	0	logfile
✘	8BQW	16189	2024-09-27	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8K1D	36792	2024-09-23	2023-07-10	3.53	3.93	3.62	4.0	0.003	0.71	0.0	0.04	16.89	0.00	2.230	11.65	0.57	1.4	98.6	0.0	1.26	0.46	0.68	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4902	610	2	0	0	0	0	logfile
✘	7FFL	31568	2024-09-30	2021-07-23	3.1	3.25	—	3.2	0.007	0.96	4.0	0.07	9.55	0.01	2.092	5.13	0.35	6.7	93.2	0.2	-3.39	0.46	0.81	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25767	3336	18	0	3	0	0	logfile
✘	7QL3	14062	2024-09-23	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	426	6	0	0	0	0	logfile
✘	9CX6	45979	2024-09-23	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✘	8oTD	17175	2024-09-23	2023-04-20	2.6	2.53	2.39	2.8	0.008	1.48	4.0	0.10	16.82	0.01	2.073	4.15	4.76	8.3	91.7	0.0	-3.89	0.48	0.88	6.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4340	540	4	0	0	0	0	logfile
✘	8SEK	40419	2024-09-23	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2380	320	10	0	0	0	0	logfile
✘	8oRS	17131	2024-09-25	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10124	1298	4	0	2	0	0	logfile
✘	7PiJ	13438	2024-09-24	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	6MN7	9166	2024-09-29	2018-10-01	4.8	5.01	—	5.0	0.016	2.23	12.0	0.12	17.86	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✘	8CED	16606	2024-09-24	2023-02-01	4.15	3.12	4.20	3.1	0.009	1.59	17.0	0.11	23.64	0.02	1.605	10.40	3.91	6.4	92.9	0.7	-3.32	0.50	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51964	2928	22	1340	0	0	0	logfile
✘	5UCY	8539	2024-09-30	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25005	2610	12	3	6	0	4467	logfile
✘	7YKJ	33892	2024-09-23	2022-07-22	3.5	3.71	3.62	3.7	0.013	1.78	1.0	0.09	15.54	0.04	1.761	8.58	2.98	6.6	92.2	1.1	-2.51	0.51	0.72	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4811	626	4	0	0	0	0	logfile
✘	6PZA	20530	2024-09-25	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	11.13	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9659	1441	3	0	2	0	0	logfile
✘	7MKM	23899	2024-09-23	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.04	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3192	406	4	0	1	0	0	logfile
✘	7A6B	11669	2024-09-29	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41494	4152	72	0	32	3854	0	logfile

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