Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8A3B	15110	2024-09-26	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14448	1792	7	0	0	0	0	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✘	8QU9	18658	2024-09-28	2023-10-15	2.88	2.61	2.88	2.8	0.003	0.56	0.0	0.03	17.55	0.00	0.000	10.00	0.00	0.0	100.0	0.0	-2.00	0.74	0.87	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72756	8836	141	0	94	47	0	logfile
✘	6WQN	21872	2024-09-30	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	23.04	0.00	1.951	9.03	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✘	8QSN	18637	2024-09-23	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✘	8UBW	42107	2024-09-24	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	8ZAM	39880	2024-09-23	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4000	492	4	0	2	0	0	logfile
✘	8QC1	18325	2024-09-25	2023-08-25	2.5	2.43	2.49	2.5	0.004	0.57	0.0	0.04	18.50	0.00	1.851	2.92	0.45	2.1	97.9	0.0	0.76	0.71	0.90	5.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9431	1118	6	0	15	115	0	logfile
✘	7Y5A	33614	2024-09-30	2022-06-16	3.5	4.25	3.40	3.6	0.003	0.60	0.0	0.04	15.01	0.00	1.986	6.54	0.04	2.7	97.3	0.0	0.45	0.90	0.85	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23975	3164	12	0	10	0	0	logfile
✘	8K0A	36758	2024-09-27	2023-07-07	3.12	3.92	3.22	3.6	0.003	0.61	0.0	0.04	15.54	0.00	2.189	5.09	0.00	2.3	97.7	0.0	-0.50	0.88	0.82	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14952	1845	6	0	0	0	0	logfile
✘	8XQ9	38570	2024-09-25	2024-01-04	3.77	2.79	3.79	2.7	0.003	0.71	0.0	0.04	14.17	0.01	2.293	4.12	4.48	2.1	97.9	0.0	-1.10	0.68	0.71	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10672	1366	2	0	0	0	0	logfile
✘	8ZAQ	39884	2024-09-24	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6449	776	9	0	27	36	0	logfile
✘	8ZAN	39881	2024-09-23	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3938	492	4	0	2	0	0	logfile
✘	8JGK	36237	2024-09-29	2023-05-21	4.04	4.09	3.96	4.1	0.003	0.56	0.0	0.04	14.40	0.00	1.966	12.26	0.00	3.7	96.3	0.0	0.73	0.54	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21650	1368	4	0	2	0	10850	logfile
✘	8ZAP	39883	2024-09-24	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6442	776	9	0	27	36	0	logfile
✘	9FFF	50355	2024-09-27	2024-05-23	3.68	4.27	3.58	2.7	0.003	0.65	0.0	0.04	20.68	0.00	2.128	11.90	0.67	4.4	95.5	0.1	0.95	0.83	0.72	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15045	2069	4	65	0	0	0	logfile
✘	8U63	41942	2024-09-24	2023-09-13	3.01	2.25	2.99	2.0	0.003	0.56	0.0	0.04	17.94	0.00	2.151	8.88	0.48	2.8	97.2	0.0	-0.74	0.77	0.79	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7758	984	4	0	2	0	0	logfile
✘	8Y2E	38852	2024-09-23	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4214	528	2	0	3	0	0	logfile
✘	8SL8	40575	2024-09-28	2023-04-21	4.2	4.52	4.23	4.2	0.004	0.68	0.0	0.04	10.98	0.00	2.201	10.62	0.00	3.6	96.4	0.0	-0.88	0.65	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19688	3152	4	0	0	0	0	logfile
✘	7C8D	30305	2024-09-25	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.03	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6359	792	3	0	1	0	0	logfile

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