Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WiY	37572	2024-09-27	2023-09-25	2.31	2.56	2.31	2.6	0.014	1.72	0.0	0.10	19.56	0.02	0.000	10.57	11.25	2.5	97.5	0.0	-1.41	0.56	0.70	4.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15486	1722	36	0	24	1248	0	logfile
✘	8QU9	18658	2024-09-28	2023-10-15	2.88	2.61	2.88	2.8	0.003	0.56	0.0	0.03	17.55	0.00	0.000	10.00	0.00	0.0	100.0	0.0	-2.00	0.74	0.87	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72756	8836	141	0	94	47	0	logfile
✘	8WiZ	37573	2024-09-27	2023-09-25	2.2	2.38	2.23	2.4	0.015	1.78	6.0	0.10	20.31	0.03	0.000	13.55	10.83	2.8	97.2	0.0	-1.91	0.59	0.73	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15306	1722	36	0	18	1068	0	logfile
✘	8BQV	16188	2024-09-24	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8WJ2	37576	2024-09-27	2023-09-25	2.35	2.51	2.35	2.6	0.015	1.95	12.0	0.10	18.14	0.03	0.000	8.58	11.26	2.1	97.5	0.4	-2.08	0.58	0.73	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14844	1722	36	0	12	1176	0	logfile
✘	8WiX	37571	2024-09-27	2023-09-25	2.29	2.42	2.29	2.4	0.015	1.75	0.0	0.10	18.64	0.02	0.000	8.78	9.17	2.8	96.8	0.4	-1.63	0.58	0.74	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14940	1722	36	0	24	702	0	logfile
✘	8WJ1	37575	2024-09-26	2023-09-25	2.27	2.40	2.29	2.5	0.015	1.77	12.0	0.10	18.98	0.03	0.000	10.88	14.10	1.1	98.6	0.4	-1.89	0.56	0.71	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14196	1698	36	0	24	738	0	logfile
✘	8AZT	15771	2024-09-23	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	6PUT	20481	2024-09-25	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10976	1170	28	68	8	308	0	logfile
✘	8WJ0	37574	2024-09-26	2023-09-25	2.24	2.40	2.24	2.5	0.015	1.72	18.0	0.10	18.81	0.03	0.000	12.28	13.66	1.1	98.9	0.0	-1.94	0.57	0.71	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14370	1698	36	0	24	888	0	logfile
✘	8CE7	16600	2024-09-25	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8JF1	36206	2024-09-27	2023-05-16	2.85	2.80	2.83	3.0	0.015	1.88	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile
✘	8BQW	16189	2024-09-27	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	9CX6	45979	2024-09-23	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✘	3J9S	6272	2024-09-25	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✘	5UCY	8539	2024-09-30	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25005	2610	12	3	6	0	4467	logfile
✘	8RK5	19260	2024-09-26	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.400	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14424	1866	6	0	0	0	0	logfile
✘	8iUY	35733	2024-09-27	2023-03-25	2.9	3.19	2.93	3.2	0.010	1.42	0.0	0.07	13.23	0.01	0.727	8.86	1.15	11.6	88.4	0.0	-3.89	0.60	0.58	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16755	2127	12	0	9	0	0	logfile
✘	7UGN	26490	2024-09-30	2022-03-25	3.4	3.60	3.35	3.4	0.004	0.65	0.0	0.19	15.93	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25698	3150	49	0	87	0	0	logfile
✘	6E11	8952	2024-09-26	2018-07-08	4.23	4.35	—	4.2	0.007	1.11	6.0	0.06	10.08	0.01	1.079	10.29	0.49	7.9	91.8	0.3	-4.77	0.79	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57401	6820	34	0	373	0	0	logfile

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