Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8GJE	40088	2024-09-29	2023-03-15	3.4	3.94	3.46	3.8	0.007	1.06	0.0	0.07	14.03	0.01	1.626	1.63	0.29	2.4	97.6	0.0	1.00	0.79	0.83	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20613	2379	48	0	129	0	0	logfile
✘	8JXP	36708	2024-09-23	2023-07-01	2.7	3.07	2.80	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.644	18.04	24.41	6.9	91.2	1.9	-2.49	0.65	0.81	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6294	786	9	0	21	9	0	logfile
✘	8JXo	36707	2024-09-23	2023-07-01	2.7	3.04	2.81	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.645	18.53	24.41	6.9	91.2	1.9	-2.50	0.65	0.84	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6294	786	9	0	21	9	0	logfile
✘	8F7C	28902	2024-09-27	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15925	2009	7	0	0	0	0	logfile
✘	6oER	20035	2024-09-28	2019-03-27	3.29	3.60	—	3.4	0.007	0.78	0.0	0.05	20.06	0.01	1.709	13.72	0.30	9.5	90.3	0.2	-4.65	0.85	0.84	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19482	1952	11	206	6	0	0	logfile
✘	8J85	36060	2024-09-30	2023-04-30	2.7	2.97	2.82	3.1	0.006	0.75	0.0	0.05	17.83	0.00	1.711	4.55	1.32	2.0	98.0	0.0	-0.55	0.71	0.85	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24376	3192	16	0	24	0	0	logfile
✘	8TVS	41650	2024-09-25	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56913	3697	22	104	443	0	24971	logfile
✘	7PM7	13523	2024-09-25	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	1.0	0.05	15.67	0.01	1.732	5.26	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10149	1260	7	0	5	0	0	logfile
✘	7VX1	32167	2024-09-30	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25362	3237	3	0	0	0	0	logfile
✘	7N3N	24141	2024-09-26	2021-06-01	3.33	3.58	3.42	3.5	0.005	0.83	1.0	0.05	13.63	0.01	1.756	10.48	0.22	5.3	94.7	0.0	-0.92	0.63	0.73	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13026	1663	4	0	2	0	0	logfile
✘	7YKJ	33892	2024-09-23	2022-07-22	3.5	3.71	3.62	3.7	0.013	1.78	1.0	0.09	15.54	0.04	1.761	8.58	2.98	6.6	92.2	1.1	-2.51	0.51	0.72	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4811	626	4	0	0	0	0	logfile
✘	6DBU	7850	2024-09-27	2018-05-03	3.9	4.03	—	3.9	0.007	1.20	8.0	0.05	22.11	0.01	1.769	23.39	0.13	8.8	90.9	0.2	-4.17	0.80	0.81	1.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17010	1788	10	136	6	0	0	logfile
✘	5oYB	3860	2024-09-26	2017-09-08	3.75	3.87	3.90	3.8	0.007	1.18	8.0	0.10	12.85	0.01	1.771	8.87	3.12	7.6	92.4	0.0	-3.98	0.65	0.84	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11770	1436	4	0	4	0	0	logfile
✘	7YJN	33875	2024-09-24	2022-07-20	3.4	3.63	3.43	3.6	0.019	1.74	21.0	0.13	15.89	0.01	1.776	26.04	8.37	11.1	87.0	1.9	-2.39	0.70	0.83	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8528	1095	6	0	1	0	0	logfile
✘	6TD6	10464	2024-09-27	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	17.68	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15680	982	4	0	3	0	7766	logfile
✘	6RD8	4809	2024-09-27	2019-04-12	3.08	3.22	3.08	3.2	0.008	0.90	0.0	0.05	14.78	0.01	1.790	6.40	0.45	2.3	97.5	0.1	-2.59	0.58	0.86	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17312	2309	26	0	1	18	0	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✘	6UJA	20794	2024-09-24	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	11.59	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8224	1128	10	0	23	0	0	logfile
✘	8So3	40646	2024-09-27	2023-04-28	3.61	3.84	3.58	3.8	0.005	0.85	1.0	0.05	13.96	0.01	1.803	10.38	0.68	6.5	93.4	0.2	-1.49	0.73	0.72	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16718	1205	8	0	4	0	7947	logfile
✘	7TC0	25803	2024-09-26	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13809	1781	4	0	11	0	0	logfile

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