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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7XLT | 33286 | 2024-09-23 | 2022-04-22 | 4.4 | 4.55 | 4.45 | 4.3 | 0.004 | 0.89 | 0.0 | 0.05 | 18.80 | 0.01 | 2.288 | 8.02 | 0.79 | 6.8 | 93.2 | 0.0 | -2.19 | 0.68 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4985 | 431 | 4 | 80 | 0 | 0 | 0 | logfile |
✘ | 6R94 | 4768 | 2024-09-29 | 2019-04-02 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22443 | 803 | 10 | 290 | 0 | 0 | 10071 | logfile |
✘ | 5GW5 | 9541 | 2024-09-26 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PVK | 20491 | 2024-09-26 | 2019-07-20 | 3.4 | 3.47 | — | 3.4 | 0.010 | 1.03 | 5.0 | 0.05 | 25.56 | 0.01 | 1.370 | 14.08 | 6.50 | 10.3 | 88.7 | 1.0 | -4.94 | 0.69 | 0.69 | 1.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60554 | 1791 | 18 | 2169 | 0 | 2 | 0 | logfile |
✘ | 6QCM | 4508 | 2024-09-24 | 2018-12-28 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -6.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52697 | 6998 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8YGJ | 39253 | 2024-09-29 | 2024-02-26 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19466 | 1777 | 6 | 241 | 0 | 0 | 0 | logfile |
✘ | 6R93 | 4767 | 2024-09-29 | 2019-04-02 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23009 | 775 | 10 | 290 | 0 | 0 | 10171 | logfile |
✘ | 7ZHJ | 14733 | 2024-09-29 | 2022-04-06 | 3.53 | 3.10 | 3.39 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 13.02 | 0.00 | 2.151 | 8.47 | 0.04 | 3.6 | 96.4 | 0.0 | -1.71 | 0.73 | 0.78 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74346 | 9528 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Y7C | 10713 | 2024-09-30 | 2020-02-28 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✘ | 7EZM | 31389 | 2024-09-24 | 2021-06-01 | 2.9 | 2.20 | — | 2.0 | 0.011 | 1.07 | 1.0 | 0.07 | 13.16 | 0.01 | 2.228 | 4.78 | 0.94 | 3.8 | 96.2 | 0.0 | -0.87 | 0.76 | 0.76 | 3.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9008 | 1171 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NKQ | 12446 | 2024-09-25 | 2021-02-18 | 2.98 | 3.25 | — | 3.1 | 0.004 | 0.49 | 0.0 | 0.04 | 13.52 | 0.00 | 2.018 | 7.16 | 0.00 | 2.7 | 97.3 | 0.0 | 1.39 | 0.81 | 0.81 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10621 | 714 | 8 | 0 | 0 | 0 | 5312 | logfile |
✘ | 6RKV | 4912 | 2024-09-27 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 7QDS | 13925 | 2024-09-26 | 2021-11-30 | 3.8 | 3.53 | 3.57 | 3.7 | 0.005 | 0.86 | 1.0 | 0.05 | 14.59 | 0.01 | 2.067 | 14.28 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.80 | 0.82 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13798 | 1771 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A8E | 15230 | 2024-09-25 | 2022-06-22 | 2.9 | 2.76 | 2.92 | 2.7 | 0.005 | 0.79 | 0.0 | 0.05 | 15.95 | 0.01 | 2.353 | 4.32 | 2.81 | 7.0 | 93.0 | 0.0 | -2.84 | 0.78 | 0.83 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56568 | 7248 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2024-09-28 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 8ooU | 17031 | 2024-09-26 | 2023-04-06 | 2.9 | 3.00 | 2.93 | 2.9 | 0.021 | 1.03 | 0.0 | 0.04 | 14.49 | 0.00 | 2.203 | 9.12 | 0.00 | 2.4 | 97.6 | 0.0 | 0.71 | 0.80 | 0.85 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61800 | 7560 | 22 | 140 | 0 | 0 | 0 | logfile |
✘ | 8RK5 | 19260 | 2024-09-26 | 2023-12-23 | 4.54 | 3.79 | 4.58 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 12.15 | 0.01 | 0.400 | 21.86 | 0.00 | 4.5 | 95.5 | 0.0 | -1.01 | 0.67 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14424 | 1866 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MR3 | 23955 | 2024-09-29 | 2021-05-07 | 3.6 | 4.01 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 16.47 | 0.01 | 2.250 | 5.33 | 0.00 | 6.5 | 93.5 | 0.0 | -1.62 | 0.83 | 0.82 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23615 | 2854 | 5 | 40 | 0 | 0 | 0 | logfile |
✘ | 6LX3 | 30004 | 2024-09-25 | 2020-02-10 | 3.15 | 3.29 | 3.08 | 3.2 | 0.016 | 1.20 | 0.0 | 0.07 | 15.57 | 0.01 | 2.266 | 5.25 | 1.40 | 10.5 | 89.5 | 0.0 | -3.73 | 0.72 | 0.85 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11503 | 1490 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VC4 | 31888 | 2024-09-27 | 2021-09-01 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16311 | 1046 | 10 | 0 | 0 | 0 | 8079 | logfile |