Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7P14	13155	2024-09-23	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.63	0.0	0.04	19.09	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3796	454	3	0	3	0	0	logfile
✘	6RQJ	4983	2024-09-27	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.35	0.00	2.041	11.05	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14971	1899	6	0	2	0	0	logfile
✘	7X83	33054	2024-09-23	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.027	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3258	405	3	0	0	0	0	logfile
✘	6KS6	0758	2024-09-27	2019-08-23	2.99	3.11	—	3.1	0.002	0.49	0.0	0.04	8.47	0.00	2.071	8.81	0.01	3.4	96.4	0.2	-3.34	0.59	0.68	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65514	8502	46	0	46	14	0	logfile
✘	7KY9	23072	2024-09-25	2020-12-07	4.05	4.67	—	4.5	0.004	1.14	0.0	0.05	14.17	0.00	2.206	15.79	0.00	8.3	91.7	0.0	-1.25	0.67	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10354	1275	7	0	14	0	0	logfile
✘	6SKY	10231	2024-09-29	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.86	0.00	2.077	5.03	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22348	2824	4	0	4	0	0	logfile
✘	8HC5	34652	2024-09-26	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11400	1493	6	0	1	0	0	logfile
✘	7NKQ	12446	2024-09-25	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10621	714	8	0	0	0	5312	logfile
✘	6RKV	4912	2024-09-27	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	13.18	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✘	5GW5	9541	2024-09-26	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	8ooU	17031	2024-09-26	2023-04-06	2.9	3.00	2.93	2.9	0.021	1.03	0.0	0.04	14.49	0.00	2.203	9.12	0.00	2.4	97.6	0.0	0.71	0.80	0.85	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61800	7560	22	140	0	0	0	logfile
✘	7ZHJ	14733	2024-09-29	2022-04-06	3.53	3.10	3.39	3.3	0.003	0.55	0.0	0.04	13.02	0.00	2.151	8.47	0.04	3.6	96.4	0.0	-1.71	0.73	0.78	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74346	9528	33	0	0	0	0	logfile
✘	6WQN	21872	2024-09-30	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	23.04	0.00	1.951	9.03	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✘	7F73	31484	2024-09-23	2021-06-27	4.0	4.29	3.95	4.3	0.007	1.07	0.0	0.06	15.26	0.00	2.247	11.96	4.10	3.1	96.9	0.0	0.17	0.57	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4934	586	2	0	0	0	0	logfile
✘	7UZE	26886	2024-09-27	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	14.97	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.87	6.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15105	988	12	0	4	113	7528	logfile
✘	7VUG	32127	2024-09-25	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.56	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8924	1127	6	0	1	0	0	logfile
✘	6M5R	30090	2024-09-25	2020-03-11	3.5	3.68	—	3.6	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.54	5.29	9.2	90.7	0.1	-3.65	0.61	0.80	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11055	1440	4	0	2	0	0	logfile
✘	6LQH	0945	2024-09-27	2020-01-13	2.94	3.06	2.73	3.0	0.008	0.83	0.0	0.05	17.09	0.00	2.268	12.84	9.05	9.3	90.7	0.0	-2.73	0.72	0.85	3.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16623	2160	18	0	0	0	0	logfile
✘	7V7E	31768	2024-09-30	2021-08-21	2.9	3.84	—	3.2	0.004	0.62	0.0	0.05	14.06	0.00	2.106	7.79	0.00	5.0	95.0	0.1	-0.18	0.87	0.84	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25340	3093	40	0	82	0	0	logfile

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