Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7XLT	33286	2024-09-23	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	18.80	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4985	431	4	80	0	0	0	logfile
✘	7MKM	23899	2024-09-23	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.04	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3192	406	4	0	1	0	0	logfile
✘	7ZHJ	14733	2024-09-29	2022-04-06	3.53	3.10	3.39	3.3	0.003	0.55	0.0	0.04	13.02	0.00	2.151	8.47	0.04	3.6	96.4	0.0	-1.71	0.73	0.78	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74346	9528	33	0	0	0	0	logfile
✘	7oQH	12701	2024-09-27	2021-06-03	3.32	3.46	3.31	3.4	0.004	0.62	0.0	0.04	14.79	0.01	1.967	11.39	0.00	6.5	93.5	0.0	-0.13	0.72	0.79	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16824	2169	12	0	11	0	0	logfile
✘	7LLL	23425	2024-09-24	2021-02-04	3.7	3.48	3.62	3.7	0.006	0.90	0.0	0.06	13.68	0.01	2.124	8.45	0.11	7.1	92.9	0.0	-4.22	0.68	0.82	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8940	1153	6	0	0	0	0	logfile
✘	8HC5	34652	2024-09-26	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11400	1493	6	0	1	0	0	logfile
✘	6UKN	20807	2024-09-23	2019-10-05	3.65	3.85	—	3.8	0.005	0.83	0.0	0.05	20.63	0.01	2.280	4.10	0.47	7.7	92.3	0.0	-2.59	0.70	0.82	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4109	536	4	0	8	0	0	logfile
✘	8A3B	15110	2024-09-26	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14448	1792	7	0	0	0	0	logfile
✘	7EZM	31389	2024-09-24	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9008	1171	6	0	0	0	0	logfile
✘	8ooU	17031	2024-09-26	2023-04-06	2.9	3.00	2.93	2.9	0.021	1.03	0.0	0.04	14.49	0.00	2.203	9.12	0.00	2.4	97.6	0.0	0.71	0.80	0.85	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61800	7560	22	140	0	0	0	logfile
✘	5WPV	8883	2024-09-27	2017-08-07	3.59	3.68	—	3.7	0.007	0.91	0.0	0.05	11.02	0.01	2.329	2.66	0.18	3.7	96.3	0.0	-4.61	0.62	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14889	1816	9	0	9	0	0	logfile
✘	5X58	6703	2024-09-30	2017-02-15	3.2	3.40	—	3.4	0.007	1.17	0.0	0.07	14.96	0.01	2.011	5.28	0.44	9.2	90.8	0.0	-4.64	0.68	0.79	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25265	3159	6	0	42	0	0	logfile
✘	7UNK	26625	2024-09-26	2022-04-11	3.45	3.69	3.50	3.6	0.003	0.66	0.0	0.04	15.44	0.01	2.169	7.74	0.75	3.0	97.0	0.0	1.09	0.72	0.83	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10992	1401	4	0	0	0	0	logfile
✘	7LX2	23564	2024-09-28	2021-03-03	3.12	3.60	—	3.5	0.021	1.72	3.0	0.10	13.14	0.01	2.211	1.58	0.15	1.2	98.8	0.0	0.73	0.79	0.83	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20196	2322	54	0	144	0	0	logfile
✘	7CKY	30394	2024-09-26	2020-07-20	3.2	3.28	—	3.3	0.003	0.48	0.0	0.04	14.49	0.00	2.154	17.29	1.51	4.3	95.7	0.0	-2.84	0.46	0.50	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8128	1038	6	0	2	0	0	logfile
✘	8BR2	16197	2024-09-27	2022-11-22	2.9	2.85	2.83	2.9	0.008	0.56	0.0	0.04	18.03	0.02	2.117	11.68	0.80	3.0	97.0	0.0	-2.85	0.62	0.85	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15574	1866	21	40	18	120	0	logfile
✘	7KU5	23034	2024-09-23	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	750	88	2	0	4	0	0	logfile
✘	8EP0	28494	2024-09-30	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✘	6WQN	21872	2024-09-30	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	23.04	0.00	1.951	9.03	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✘	7EUo	31323	2024-09-25	2021-05-18	2.9	3.61	2.97	3.5	0.004	0.65	0.0	0.05	13.72	0.00	2.198	6.82	0.00	4.3	95.7	0.0	-0.21	0.63	0.82	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8950	1138	7	0	2	0	0	logfile

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